mRNA_H-paniculata_contig4123.10615.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4123.10615.1
Unique NamemRNA_H-paniculata_contig4123.10615.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A6H5KJ10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ10_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 7.710e-95
Identity = 176/255 (69.02%), Postives = 193/255 (75.69%), Query Frame = 1 
Query:    1 GSGG-GGDVVSKPAGRVPRKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKR---PRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFFRVS 753
            GSGG G    +   GRVPRKHQEQRRGLPIFA+KA I+RAVK HQTVVVVGETGSGKSTQIPQFLYEAGI  GG GW            G  + +   +  GSGKKR   P       G +  G +K G +GG +IACTQPRRVAAVTV++RVAAE G        Y+VRFDD TS STR+KYMTDGVLLREAMSDPLLSAYSA+VLDEAHERSLDTDILFGL+RRLQPKRPDLKVVVMSATLDVDLF+RFFR S
Sbjct:  307 GSGGVGAATAALGRGRVPRKHQEQRRGLPIFAHKADIIRAVKYHQTVVVVGETGSGKSTQIPQFLYEAGITRGGAGWI----------PGWESGEATTAARGSGKKRGRAPSQEDVVKGSSSGGGDKRGFQGG-LIACTQPRRVAAVTVAKRVAAEVGCXXXXXXXYTVRFDDRTSKSTRIKYMTDGVLLREAMSDPLLSAYSAIVLDEAHERSLDTDILFGLVRRLQPKRPDLKVVVMSATLDVDLFRRFFRDS 550
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: D7FZX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX9_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 2.350e-82
Identity = 169/259 (65.25%), Postives = 182/259 (70.27%), Query Frame = 1 
Query:    1 GSGG-GGDVVSKPAGRVPRKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKR---PRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLK-------------VVVMSATLDVD 726
            GSGG G    +   GRVPRKHQEQRRGLPIFA+KA I+RAVKDHQTVVVVGETGSGKSTQIPQFLYEAGI  GG GW    E        T AR       GSGKKR   P       G +  G +K G +GG +IACTQPRRVAAVTV++RVAAE G        Y+VRFDD TS STR+KYMTDGVLLREAMSDPLLSAYSA+VLDEAHERSLDTDILFGL+RRLQPKRPDLK             V VM AT D D
Sbjct:  307 GSGGVGAATAALGRGRVPRKHQEQRRGLPIFAHKADIIRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGITRGGAGWIPGGE---SGEATTAAR-------GSGKKRGRAPSQEDVFKGSSSSGPDKRGFQGG-LIACTQPRRVAAVTVAKRVAAEVGCXXXXXXXYTVRFDDRTSKSTRIKYMTDGVLLREAMSDPLLSAYSAIVLDEAHERSLDTDILFGLVRRLQPKRPDLKDSVSLHVPGRTHPVDVMYATEDQD 554
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A835ZD99_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD99_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.830e-64
Identity = 120/220 (54.55%), Postives = 150/220 (68.18%), Query Frame = 1 
Query:   28 SKPAGRVPRKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPD 687
            ++P+ R+PR+HQE RR LP+F ++  IV AVK H+TVV+VGETGSGKSTQIPQ+LY+AG+          ++H+G    GT++              PR                       I CTQPRRVAA+TV++RVA E GSELGH  GYSVRFDD TS STRVKY+TDGVLLREAM+DP+L +YS ++LDEAHERSL TDILFGL+R+LQ KRP+
Sbjct:   23 ARPSPRLPRQHQEVRRQLPVFQHRDNIVTAVKTHRTVVLVGETGSGKSTQIPQYLYDAGLA---------SKHKGSSGNGTLS--------------PR----------------------TICCTQPRRVAAITVAKRVAEEMGSELGHTCGYSVRFDDQTSPSTRVKYVTDGVLLREAMADPMLKSYSVLILDEAHERSLQTDILFGLVRKLQDKRPN 197
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: K8YVU8_NANGC (Deah (Asp-glu-ala-his) box polypeptide 35 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVU8_NANGC)

HSP 1 Score: 216 bits (550), Expect = 8.140e-62
Identity = 123/234 (52.56%), Postives = 147/234 (62.82%), Query Frame = 1 
Query:   52 RKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFFRVS 753
            R+HQ  R+ LPI+  K  +V  V+ H +VV+VGETGSGKSTQ+PQFL +AG C G V      E QG       AR                                     +IACTQPRRVAA+TV+ RVA E G  LG  VGY+VRFDD T   T +KYMTDGVLLREAM+DPLL+ Y+ ++LDEAHERSL TDILFGLIRR Q +R DL+VVVMSATLDV++F+RFF   
Sbjct:   23 RQHQNARQQLPIWRQKTYVVETVRRHASVVLVGETGSGKSTQVPQFLLDAGFCAGIV------EAQGSTPSPIRARK------------------------------------LIACTQPRRVAAITVAGRVAEEMGCALGQAVGYAVRFDDKTGPRTVIKYMTDGVLLREAMTDPLLTRYAVIILDEAHERSLQTDILFGLIRRAQREREDLRVVVMSATLDVEVFRRFFETG 214
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A7J7C7L0_TRIWF (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C7L0_TRIWF)

HSP 1 Score: 201 bits (510), Expect = 9.720e-58
Identity = 108/230 (46.96%), Postives = 143/230 (62.17%), Query Frame = 1 
Query:   55 KHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFF 744
            KHQE+R+ LPI+AY+  +++AV DHQ +V+VGETGSGK+TQIPQ+L+EAG                  +RG VA                                         CTQPRRVAA++V+ RV+ E G +LGH VGYS+RF+DCTSD T +KYMTDG+LLRE +  P L++YS V++DEAHERSL TDILFGL++ +   RPDLK+++ SATLD + F  +F
Sbjct:   69 KHQEERKTLPIYAYRDELLQAVNDHQVIVIVGETGSGKTTQIPQYLHEAGYT----------------KRGKVA-----------------------------------------CTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLCQPDLASYSVVMVDEAHERSLSTDILFGLVKDVARSRPDLKLLISSATLDAEKFSAYF 241
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A7R9T4T2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T4T2_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 1.990e-56
Identity = 102/230 (44.35%), Postives = 143/230 (62.17%), Query Frame = 1 
Query:   55 KHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFF 744
            K +  R+ LPIF Y+ ++++AV+DHQ VV+VGETGSGK+TQIPQ+++EAG  G                                                   KT       I CTQPRRVAA++V+ RVA EAG +LGH VGY++RF+DCT+D TRVKYMTDG+LLRE + +P LS+Y+ +++DEAHER+L TD+LFGL++ +   RP++K+++ SATLD + F  +F
Sbjct:   20 KIEADRKSLPIFPYRESLIKAVEDHQVVVIVGETGSGKTTQIPQYMWEAGFGG---------------------------------------------------KTQK-----IGCTQPRRVAAMSVASRVAEEAGVKLGHEVGYTIRFEDCTNDKTRVKYMTDGMLLREFLGEPDLSSYAVMMVDEAHERTLHTDVLFGLVKDIARFRPEIKLLISSATLDAEKFSEYF 193
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A1Y5ICM3_OSTTA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5ICM3_OSTTA)

HSP 1 Score: 194 bits (492), Expect = 3.750e-55
Identity = 102/230 (44.35%), Postives = 142/230 (61.74%), Query Frame = 1 
Query:   55 KHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFF 744
            K +  R+ LPIF Y+  +++AV+DHQ VV+VGETGSGK+TQIPQ+++EAG  G                                                   KT       I CTQPRRVAA++V+ RVA EAG +LGH VGYS+RF+DCT+D TR+KYMTDG+LLRE + +P LS+Y+ +++DEAHER+L TD+LFGL++ +   RP++K+++ SATLD + F  +F
Sbjct:  254 KIEADRKSLPIFPYRDGLIKAVEDHQVVVIVGETGSGKTTQIPQYMWEAGFAG---------------------------------------------------KTQK-----IGCTQPRRVAAMSVAARVAEEAGVKLGHEVGYSIRFEDCTNDKTRLKYMTDGMLLREFLGEPDLSSYAVMMVDEAHERTLHTDVLFGLVKDIARFRPEIKLLISSATLDAEKFSEYF 427
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A7E4ZXY9_PANRE (Uncharacterized protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4ZXY9_PANRE)

HSP 1 Score: 199 bits (507), Expect = 6.270e-55
Identity = 103/227 (45.37%), Postives = 142/227 (62.56%), Query Frame = 1 
Query:   64 EQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFF 744
            E R+ LP+FA++   ++AVKDHQ +++ GETGSGK+TQ+PQ+LYEAG C               K+R                                           I CTQPRRVAA++V+ RVA E G++LG +VGYS+RF+DCTS+ T +KYMTDG+LLRE M++P L++YS +++DEAHER+L TDILFGL++ +   RPDLK+++ SATLD D F +FF
Sbjct:  392 ETRKSLPVFAFREEFIQAVKDHQVLIIEGETGSGKTTQLPQYLYEAGFCA-------------DKKR-------------------------------------------IGCTQPRRVAAMSVASRVAEEVGTKLGAVVGYSIRFEDCTSERTAIKYMTDGMLLREFMNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATLDADKFSKFF 562
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A7N1A962_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N1A962_KALFE)

HSP 1 Score: 194 bits (494), Expect = 7.900e-55
Identity = 108/243 (44.44%), Postives = 151/243 (62.14%), Query Frame = 1 
Query:   31 KPAGRVPRKH-----QEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFF 744
            KP  +V +K      QE+RR LP+++YK ++++A++ +Q +V++GETGSGK+TQIPQ+L+EAG          TN                                                 G+IACTQPRRVAA++V+ RV+ E G +LGH VGYSVRF+DCTSD T VKYMTDG+LLRE +S+P LS+YS +++DEAHER++ TD+LFGL++ +   RP+LK++V+SATLD   F  FF
Sbjct:  176 KPPVKVSKKPSWKQLQEERRRLPVYSYKHSLLQAIEKYQIIVIMGETGSGKTTQIPQYLHEAGY---------TNR------------------------------------------------GIIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSVRFEDCTSDKTVVKYMTDGMLLREFLSEPDLSSYSVLMIDEAHERTVSTDLLFGLVKDIARYRPELKLLVLSATLDTAKFSDFF 361
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BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Match: A0A7S2K837_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K837_9STRA)

HSP 1 Score: 186 bits (471), Expect = 8.670e-55
Identity = 104/241 (43.15%), Postives = 142/241 (58.92%), Query Frame = 1 
Query:   25 VSKPAGRVPRKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVGETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPTGSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVAAEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSAVVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFFR 747
             ++P  +   +  EQR  LP++ +K +++  V  HQ  V+ GETGSGK+TQIPQFL EAG       +N +                                                   ++ACTQPRRVAA ++++RVA E   ELG  VGYSVRFD+ +SD+TR+K++TDG+LLREAM+DPL++ YS +VLDEAHER+L TD+L GL++ +  KR DLKVVVMSATLD + FQ +F 
Sbjct:   36 TNEPYSQKYHRILEQRLKLPVYKFKKSLIETVAKHQVTVIEGETGSGKTTQIPQFLVEAGYD-----FNNSK--------------------------------------------------LVACTQPRRVAATSIAQRVAEEMDCELGAEVGYSVRFDEMSSDATRLKFLTDGMLLREAMNDPLMARYSVIVLDEAHERTLATDVLMGLLQEVLLKRKDLKVVVMSATLDAEKFQTYFN 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4123.10615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ10_9PHAE7.710e-9569.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZX9_ECTSI2.350e-8265.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD99_9STRA2.830e-6454.55P-loop containing nucleoside triphosphate hydrolas... [more]
K8YVU8_NANGC8.140e-6252.56Deah (Asp-glu-ala-his) box polypeptide 35 n=3 Tax=... [more]
A0A7J7C7L0_TRIWF9.720e-5846.96Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A7R9T4T2_9CHLO1.990e-5644.35Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A1Y5ICM3_OSTTA3.750e-5544.35P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7E4ZXY9_PANRE6.270e-5545.37Uncharacterized protein n=1 Tax=Panagrellus redivi... [more]
A0A7N1A962_KALFE7.900e-5544.44Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A7S2K837_9STRA8.670e-5543.15Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4123contigH-paniculata_contig4123:285..5578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.3
Seed ortholog evalue1.8e-72
Seed eggNOG ortholog2880.D7FZX9
KEGG koko:K12818,ko:K13117
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons5
Model size756
Cds size756
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4123.10615.1prot_H-paniculata_contig4123.10615.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4123 285..5578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930258.2636933-CDS-H-paniculata_contig4123:284..4251622930258.2636933-CDS-H-paniculata_contig4123:284..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 285..425 -
1691481213.6752245-CDS-H-paniculata_contig4123:284..4251691481213.6752245-CDS-H-paniculata_contig4123:284..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 285..425 -
1622930258.2774632-CDS-H-paniculata_contig4123:1796..18901622930258.2774632-CDS-H-paniculata_contig4123:1796..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 1797..1890 -
1691481213.6897907-CDS-H-paniculata_contig4123:1796..18901691481213.6897907-CDS-H-paniculata_contig4123:1796..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 1797..1890 -
1622930258.291985-CDS-H-paniculata_contig4123:3782..40521622930258.291985-CDS-H-paniculata_contig4123:3782..4052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 3783..4052 -
1691481213.7011552-CDS-H-paniculata_contig4123:3782..40521691481213.7011552-CDS-H-paniculata_contig4123:3782..4052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 3783..4052 -
1622930258.3083944-CDS-H-paniculata_contig4123:4883..50021622930258.3083944-CDS-H-paniculata_contig4123:4883..5002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 4884..5002 -
1691481213.7130558-CDS-H-paniculata_contig4123:4883..50021691481213.7130558-CDS-H-paniculata_contig4123:4883..5002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 4884..5002 -
1622930258.3247159-CDS-H-paniculata_contig4123:5446..55781622930258.3247159-CDS-H-paniculata_contig4123:5446..5578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 5447..5578 -
1691481213.7234445-CDS-H-paniculata_contig4123:5446..55781691481213.7234445-CDS-H-paniculata_contig4123:5446..5578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4123 5447..5578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4123.10615.1

>prot_H-paniculata_contig4123.10615.1 ID=prot_H-paniculata_contig4123.10615.1|Name=mRNA_H-paniculata_contig4123.10615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
GSGGGGDVVSKPAGRVPRKHQEQRRGLPIFAYKAAIVRAVKDHQTVVVVG
ETGSGKSTQIPQFLYEAGICGGGVGWNGTNEHQGQKRRGTVARDGPISPT
GSGKKRPRHSYGGSGDAGIGKNKTGSRGGGVIACTQPRRVAAVTVSRRVA
AEAGSELGHIVGYSVRFDDCTSDSTRVKYMTDGVLLREAMSDPLLSAYSA
VVLDEAHERSLDTDILFGLIRRLQPKRPDLKVVVMSATLDVDLFQRFFRV
S*
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mRNA from alignment at H-paniculata_contig4123:285..5578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4123.10615.1 ID=mRNA_H-paniculata_contig4123.10615.1|Name=mRNA_H-paniculata_contig4123.10615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5294bp|location=Sequence derived from alignment at H-paniculata_contig4123:285..5578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGCGGCGGCGGCGGGGACGTCGTGTCGAAACCAGCTGGACGTGTGCC
GCGGAAGCACCAGGAGCAGCGGAGGGGACTGCCTATCTTCGCATACAAGG
CGGCCATCGTCCGTGCGGTCAAGGACCACCAGGTGTGGAATGGGCTTGCC
GTGGGAGTCGAGTCGTTTACCCTTGGCTTCAATAGCGACCCTACGCTACG
TGAGAGCTCTGGAACAGCTCCTCGCTACTGTATTCTAGATATATTTGAGG
CATACTGCCGCAGTGCCCATGCACCAGCCTACCGCACCGGTGTGTCATCC
GTCGGTGTTTTTTTGTCATATTGTTGATCGTTACAGTAGGCCGTGGATGT
AGTCAACTGTCAAGATCTGTTACAGCCGCGGTGGTGACACAAATGTGTGT
GTGTGTGTGTGTGTGTATGTGTCACTATTTTACTCCGTTCAATTTAACTG
TAGTAGCACACACATAGTCATCCCCCCGTACGCTTTGCAGCAAGCATCCT
AAATAGGCTGTACCTACTGCTCGCTTGTTTTTCTTCTTAATGCAAAACCA
CTGATGCTATATATGTCATAATCCAGACGGTGGTAGTGGTGGGTGAAACC
GGCAGCGGGAAATCAACCCAAATACCGCAGTTCCTGTACGAGGCAGGCAT
ATGCGGTGGAGGCGTCGGCTGGAACGGGACCAACGAACACCAAGGGTAAG
GGGTGTAGGATACCGAATTTTCGCAAGTTTTGTAAGATATACTACCATGG
CAAAGTATTCCACATACCCCCCAACAGAGAGCACAACTAATAACGACAAA
ATATTTTCAATTTCATTGTGCCTGCCGAAATTTTCCACGCGACTAGAGCT
ATGTACACAGCCCGTCGACAATTTTTTAGGTACGACGTCACCCTATATTA
CTGTAGTAGCGTTATTTTTCACGTAAGGAAGGCAATGGACGTGTCCTGAT
GACATTTTATTAGCCCCCCGGCGAGTGAAAGCACGTATAGGTGGCGCGCC
ATTGAGCAACTCAAGTCACAGTAGTACCTGGGTCGGTTGACGTGTGTTAT
CGGAAATCTAGAACCCATAAATGTGTTATGTTCCATGTATGGCAAGACTT
GAGGCGTGAGAGAAGAGTAGAAGTTGGCTAGCCCAACGATAACAACCAAT
TCAAGGCCGCGGTCAGTGGGATTCTTTTCTCTGGCTGGTGAATAATCAAA
ATAATGCGTGTAAGAAATGGTGCTCTGTTGACGTACACTCTGGTTCTTGA
GGGGTTAGTCGGGGATGTAGTGTGGAGCACAGACATATTGTGGTGGAAGC
ATAGTTTGCCGGGAAATGTCTTTTTCTGCGGATCGGAGGCAGCTACAAAG
CTGTCTCGGCATAGGGCAAAAAGGCCGCTGAATATTGTGTACGGGAATGG
TGACGAGGAACGTCAGGAACGTGCTCTTCATGCCCACATGTACATGCTGG
AGAACACCCGACCACCAAAACACGATGTGCGTTTGCCGTTGCGCTTGCTT
TACGAATATCCCACGCGTGACAGTAGCCAAAAACGTCGGGGCACCGTCGC
GCGAGACGGGCCAATTTCTCCAACGGGCAGCGGGAAGAAACGGCCAAGGC
ATTCCTACGGAGGAAGCGGCGATGCTGGTATTGGCAAGAATAAAACGGGC
AGTAGGGGGGGCGGAGTGATCGCGTGCACACAACCGCGAAGGGTCGCTGC
TGTGACAGTGAGCAGGCGTGTGGCGGCCGAAGCTGGAAGCGAGCTGGGGC
ATATAGTGGGTTACAGCGTCCGCTTCGATGACTGCACTTCGGATAGGTAG
GAGGTCGATCGCTTGATCGATTGATTGATTATGTTATGCTCCATTATTTT
ACAAAGAAGATTGCGCACGTCATTTGCTATCCTCCATAATTCGACAATGG
CGATTGGTCATGTCATTTTCCTATTATTGAACTGTAGCAGTTGGTTGTAT
CACCTCCGTTGTTGTACTCTGGTGACTGATCATGTCATCATCCATTGTTT
GTACTGTAGTACATGATGCCTTTCGTTCCTTGCGTTATGCATTCGATTAT
AACACAATGCTCTGTCAAAGGTTGCAGTGGTAAAATAAATATCGTAGCTT
ATGGGGGAAAATATGTTGGCTGGTGTGATGAGCGTTAGGCGGTGAACCAT
AGTAGTGTATCACATAACCTTGGTCATACTCCACCCAGATATTTGTGATA
CGATAATTCACTAGAATTAAGTTTTCGTACATGATCTCGGTCACCATGCC
GATGTGCTTGCGTTAGGATTTTTTTTTTCCATTCCTCATCTCGAGTTATT
GGTAAAAATTCATATTTTTCATGGAATTATTTTGTATTAAACTTTACACA
CCTCTAAATGCGATTTTTTTCCGTTTTTTTCTCGATTATTTCGCTGAATT
TCCTTTTTTCGTCGATGGCCTCAGAACTAAAGTTTCAGCCCTTGCACAGA
CAAGGCCTATGCGAAAAAATTCGCTGCAATTTTCTCTTGGTAGATATCGA
GATTTGACGTCGGATCAAATACTACCTCACTTTGTATTAGATATAGTATT
GGACAAACATCCCGTCACGGAAGTTAGAATTAAAACAGTATTTCTCTTCT
TTTTTTTCCCTTGTAATAGTTTAGCTTTTCACTGGAAATATATATATATT
TGGAGGACATCCCAGAGGAAGGGATGATTTCTTTATTTCAATTTTTTTTT
TTTTTGCTAATCTAGCGGAATGTTTTCTTGATGTGTACGTACGTAACTGA
TGCTGATGAACATAGTATCGGGGAGATCCTTGGAATTTGGTGAACACGGA
GGCGGGGCGTAATTGGTAGTACCGACTCATGGTGGACTCCTAACAGCGTA
CATACCGAACGCACTCTAAAGTATATAGAACATAGTGTCGCGCAATCTCT
AACAAAACTGATGTACGTCATAGTTATACCGCATTTCGTAGACCCGACGC
TATTTTTGTATCAACGGAACGCGCAAAACGCACATAACAGTGCAGGCAAC
AACACGAGACGGTAGGTGGCGATATCGCACAATTCGCTGTCGTTTAAAAA
AGTTTCTATCAATATACATCGCTTTCAATACTATTTCCTATATACTTTAT
GAGGACCCTCAATCATGAGGACCCTCAAAACCCGGTTGTACAGGTACACG
CACAATGAGTAAGTTCGTTTTCTTCCGAGCCATGTTCGTCGCAATAAATT
TTCACGGTTTGCTCAACGTTGGTTTGATCCCACAGTCCATCGTCGTTCGT
TCAAAAACCCATGAGCTAAAATAGTGATATTTTTTCGGAATATTTATATA
TATATTTCGTGAATTTTCCTCACGTGGTTTTTTCAACAATGTCTCTCCGA
ATTTTGCACATCTTTTTTCTGGAAGCATTTTTTTTGTTCGGGTCATTTCG
ATATATACATATATATATATATAAATATATATTTATATAATTCTTGTTCG
CTGCTTATCGAGAGTCCCCGACACTTCAAGTCACTTTCGGACCCCGTAAA
ACCCGTAAAAAAAAAGAGAGAAGTGAACGAACACGGGCGACCTCGGGAAT
GGAGTCAGGAACACGCGTGCAAAAAAAGGCGCATGAGAATTTCATGAAAG
GGTCTTGTACACGTCTCATCTTTTCTGAACCAGCCTGTATATTCAGTTGA
TGACGATGTTGAATCTGTTACGTTTCGCCTCCGTACAGCACACGCGTCAA
GTACATGACGGACGGAGTTCTCCTGCGAGAGGCTATGAGTGACCCGCTTC
TTTCCGCGTACTCTGCCGTAGTGCTGGACGAGGTGAGGACGCCTGACTGT
ACTGCAAGTAGCCCTACCGTGAAGACGGCGGGCGACAACTCAGCACTTTC
GAGATGCAGCCCTCTGAAATCTGCTTTGTGAGACCTGTTTTTGGGACATT
TTTTTCGTAAAATAGAACATGATCGGTTATTATAATATCAGATTTCAGGA
CGCCAGTCATCGTAGATCTGTTCTTCGGCTCCCAGATCTGCTTCCTCTGA
AACGCTAAAAAAAACAAAAAACGCTGATTTTGCAACACGAATCGGATGTA
AATATTGAGCTATGGTTTGAAACGTCCCACGTCCCGAAGGTGTTGAAACG
TTTATATAATTATTTATTTATTTTTGAAAGTATTGAAAAACATTTCATAC
AGGTTGATGTTTTGGCCAAACGTTGTATAACATCTCATGAGAGAGAAGGT
GTTGGAAATCGTTGAACTATAGGTATGGTTGTCGATTCGTTTTTAGTATG
AAGAATTTCGTGATTCCACATACATATACTAGTAGCAGGCCACGGGCTAC
GCCTGTGCGACTCGCTTCGCTCGTCGCTGCTGTTCTACATTGCACTCACG
GACACAGGCTGGCGGCGGCAGGAGATCTTCTTTGTGTTGTCGGGGTGTTC
TTTGGTGGGGTCTTAAGTCTTAGTAATTCTTCTTTTCGTTTGTTGAGGCA
GGTTGAAGGGGTGTCGTATTTTGATGTCACATTGTCACACTGTTCCCTTT
TATGAAAACGAAAAACACAAATGAGAGAGAAGGTGTCCGCTGTATGTGAA
CAAACGACGATGTAGGCTGGGGTGGGATGGCCATGCGTGCCCGTGCTGCG
CACTCAGCACGCGAAGCAGCAGTACGCTTGCCCCTGGGTGCGCTGAGCAC
CCCTTGTTGTTTCGTTGTTTCGTTTTTGACTAAATAGCTGCACTGTACTG
TTTGGATTTTTTTTTTTTGATATGTAGGCACGTGTGCTGGTGGTGCAACC
CCCCACTCACTCTCTTGAATCGCACTATCTTGGACTGTCTGTGCATGTGT
GCTGGTGGTGAAACAGCAGTCAGTGCATGAGCGTACTTGTTTACCAGCAA
GTCAGACAAGTGAACCTCCCCCATGATGTAAACACCCTATCTCGTACAAA
GCACCCTGCTTCTTGTAGACCGCGGGTCTGAGCGGTTGGACTAAAACGTG
TTGAACAAGAGAACATTCAAGCTTTGCTCACCTCTGAAGAAGAAATTGAT
GAATCGATGTGGTGGACACGGAACACAAGTCGAATGATAACGATTGCTCG
TTCCCCAGAACAGCACATATACCTGCAAGAAATACTTTCATCCCTCGATT
GCCCGCATGTGTCTGTTCTTGTTCTTCTTGGTGCCGGGTGTTTTGGGCTA
CAGGCACACGAGCGGAGCCTGGACACGGACATCTTGTTTGGACTGATCCG
CCGACTGCAGCCGAAACGGCCGGATTTGAAGGTGGTGGTGATGTCCGCCA
CGCTCGACGTCGACCTATTTCAACGTTTTTTCAGAGTAAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4123:285..5578-

>mRNA_H-paniculata_contig4123.10615.1 ID=mRNA_H-paniculata_contig4123.10615.1|Name=mRNA_H-paniculata_contig4123.10615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig4123:285..5578- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGCGGCGGCGGCGGGGACGTCGTGTCGAAACCAGCTGGACGTGTGCC
GCGGAAGCACCAGGAGCAGCGGAGGGGACTGCCTATCTTCGCATACAAGG
CGGCCATCGTCCGTGCGGTCAAGGACCACCAGGGCAGCGGCGGCGGCGGG
GACGTCGTGTCGAAACCAGCTGGACGTGTGCCGCGGAAGCACCAGGAGCA
GCGGAGGGGACTGCCTATCTTCGCATACAAGGCGGCCATCGTCCGTGCGG
TCAAGGACCACCAGACGGTGGTAGTGGTGGGTGAAACCGGCAGCGGGAAA
TCAACCCAAATACCGCAGTTCCTGTACGAGGCAGGCATATGCGGTGGAGG
CGTCGGCTGGAACGGGACCAACGAACACCAAGGACGGTGGTAGTGGTGGG
TGAAACCGGCAGCGGGAAATCAACCCAAATACCGCAGTTCCTGTACGAGG
CAGGCATATGCGGTGGAGGCGTCGGCTGGAACGGGACCAACGAACACCAA
GGCCAAAAACGTCGGGGCACCGTCGCGCGAGACGGGCCAATTTCTCCAAC
GGGCAGCGGGAAGAAACGGCCAAGGCATTCCTACGGAGGAAGCGGCGATG
CTGGTATTGGCAAGAATAAAACGGGCAGTAGGGGGGGCGGAGTGATCGCG
TGCACACAACCGCGAAGGGTCGCTGCTGTGACAGTGAGCAGGCGTGTGGC
GGCCGAAGCTGGAAGCGAGCTGGGGCATATAGTGGGTTACAGCGTCCGCT
TCGATGACTGCACTTCGGATAGCCAAAAACGTCGGGGCACCGTCGCGCGA
GACGGGCCAATTTCTCCAACGGGCAGCGGGAAGAAACGGCCAAGGCATTC
CTACGGAGGAAGCGGCGATGCTGGTATTGGCAAGAATAAAACGGGCAGTA
GGGGGGGCGGAGTGATCGCGTGCACACAACCGCGAAGGGTCGCTGCTGTG
ACAGTGAGCAGGCGTGTGGCGGCCGAAGCTGGAAGCGAGCTGGGGCATAT
AGTGGGTTACAGCGTCCGCTTCGATGACTGCACTTCGGATAGCACACGCG
TCAAGTACATGACGGACGGAGTTCTCCTGCGAGAGGCTATGAGTGACCCG
CTTCTTTCCGCGTACTCTGCCGTAGTGCTGGACGAGCACACGCGTCAAGT
ACATGACGGACGGAGTTCTCCTGCGAGAGGCTATGAGTGACCCGCTTCTT
TCCGCGTACTCTGCCGTAGTGCTGGACGAGGCACACGAGCGGAGCCTGGA
CACGGACATCTTGTTTGGACTGATCCGCCGACTGCAGCCGAAACGGCCGG
ATTTGAAGGTGGTGGTGATGTCCGCCACGCTCGACGTCGACCTATTTCAA
CGTTTTTTCAGAGTAAGCTAGGCACACGAGCGGAGCCTGGACACGGACAT
CTTGTTTGGACTGATCCGCCGACTGCAGCCGAAACGGCCGGATTTGAAGG
TGGTGGTGATGTCCGCCACGCTCGACGTCGACCTATTTCAACGTTTTTTC
AGAGTAAGCTAG
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