mRNA_H-paniculata_contig41224.10614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 198 bits (503), Expect = 8.240e-54 Identity = 97/159 (61.01%), Postives = 116/159 (72.96%), Query Frame = 1
Query: 373 VTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
VTF N +GMLVA+AYR+G N+ SVL AL PSNP RV MD N FH IYGHA E +L TAKRLG +L G+MH C+GCSM K RK I H T+N + K GRVFV LGGKK +AS+GG +YPMI+ D+++RR W+YFL K D SAF+ FL VRADG
Sbjct: 352 VTFQNFDGMLVATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADG 510
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.300e-52 Identity = 97/169 (57.40%), Postives = 119/169 (70.41%), Query Frame = 1
Query: 343 FKGNECVCWKVTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
FKG VTF N +GML+ASAYR+GE + +VL AL PSNP TMD N FH IY H+ + LL TAKRLGT+L GEMHECTGCSM+K +K I T +R+ K GRVFV+LGG+K +ASVGG +YPMI+ D+++RR W+YFL K D AF+ FL VRADG
Sbjct: 621 FKGQ------VTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADG 783
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.320e-52 Identity = 97/169 (57.40%), Postives = 119/169 (70.41%), Query Frame = 1
Query: 343 FKGNECVCWKVTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
FKG VTF N +GML+ASAYR+GE + +VL AL PSNP TMD N FH IY H+ + LL TAKRLGT+L GEMHECTGCSM+K +K I T +R+ K GRVFV+LGG+K +ASVGG +YPMI+ D+++RR W+YFL K D AF+ FL VRADG
Sbjct: 328 FKGQ------VTFQNFDGMLIASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADG 490
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.670e-52 Identity = 92/159 (57.86%), Postives = 115/159 (72.33%), Query Frame = 1
Query: 370 KVTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRAD 846
+VTF N +GML+ASAYR+GE + +VL AL P+NP TMD N FH IY H+ E LL TAKRLGT L G+MH C+GCSMSK RK I+ T R+ K GRVFV+LGG+K IASVGG +YPMI+ D+++RRTW+YFL + D AF+ FL VRA+
Sbjct: 212 QVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRAN 370
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 192 bits (487), Expect = 5.970e-52 Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 1
Query: 373 VTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
VTF N +GML++ AYR+ N SVL AL PSNP MD N FH IY H+ E LL TAKRLG +L G+MH CTGCSMSK F+K I H T R+ K GRVFV+LGG+K +ASVGG +YPMI+ D+++RRTW+YFL K D ASAF+ FL VRADG
Sbjct: 531 VTFQNLDGMLISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADG 689
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 191 bits (484), Expect = 1.530e-51 Identity = 94/160 (58.75%), Postives = 116/160 (72.50%), Query Frame = 1
Query: 370 KVTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
+VTF N +GML+ASAYR+GE + +VL AL P+NP TMD N FH IY H+ E LL TAKRLGT L G+MH C+GCSMSK RK I+ T R+ K GRVFV+LGG+K ASVGG +YPMI+ D+++RRTW+YFL K D SAF+ FL VRA+G
Sbjct: 90 QVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANG 249
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 190 bits (482), Expect = 5.220e-51 Identity = 95/160 (59.38%), Postives = 116/160 (72.50%), Query Frame = 1
Query: 370 KVTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
+VTF N +GML+ASAYR+GE + +VL AL P+NP TMD N FH IY H+ E LL TAKRLGT L G+MH C+GCSMSK RK I+ T R+ K GRVFV+LGG+K IASVGG +YPMI+ D+++RRTWI FL K D SAF+ FL VRA+G
Sbjct: 145 QVTFQNFDGMLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANG 304
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 177 bits (450), Expect = 4.310e-50 Identity = 87/151 (57.62%), Postives = 108/151 (71.52%), Query Frame = 1
Query: 397 MLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
ML+ASAYR+GE + +VL AL P+NP TMD N FH IY H+ E LL TAKRLGT L G+MH C+GCSMSK RK I+ T R+ K GRVF +LGG+K IASVGG +YP+I+ D+++R TW+YFL K D SAF+ FL VRA+G
Sbjct: 1 MLIASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANG 151
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 149 bits (375), Expect = 9.930e-37 Identity = 82/159 (51.57%), Postives = 97/159 (61.01%), Query Frame = 1
Query: 373 VTFSNQEGMLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTLTAKRLGTDLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
VTF N +GMLVA+AYR+G N+ SVL AL PSNP RV MD N FH IYGHA E LL TAKRLG +L G RVFV+LGGKK +AS+GG +YPMI+ D+++RR W+YFL K D SAF+ FL VRADG
Sbjct: 407 VTFQNFDGMLVATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGLLRTTAKRLGIELTG-------------------------------RVFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADG 534
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.330e-28 Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 571 DLQGEMHECTGCSMSKGFRKCILHSTSNRAGFKFGRVFVELGGKKKIASVGGMYYPMIITDEYSRRTWIYFLVRKFDTASAFKRFLVEVRADG 849
+L G+MH CTGCSMSK F+K I H T R+ K GRVFV+LGG+K +ASVGG +YPMI+ D+++RRTWIYFL K D ASAF+ FL V ADG
Sbjct: 2 ELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLASVLADG 94 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41224.10614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41224.10614.1 >prot_H-paniculata_contig41224.10614.1 ID=prot_H-paniculata_contig41224.10614.1|Name=mRNA_H-paniculata_contig41224.10614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp MLVASAYRVGENNNTSVLPALVPSNPPRVVTMDANAFHCIYGHAGEHLLTback to top mRNA from alignment at H-paniculata_contig41224:2..853+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41224.10614.1 ID=mRNA_H-paniculata_contig41224.10614.1|Name=mRNA_H-paniculata_contig41224.10614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=852bp|location=Sequence derived from alignment at H-paniculata_contig41224:2..853+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41224:2..853+ >mRNA_H-paniculata_contig41224.10614.1 ID=mRNA_H-paniculata_contig41224.10614.1|Name=mRNA_H-paniculata_contig41224.10614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig41224:2..853+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |