mRNA_H-paniculata_contig4120.10611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4120.10611.1
Unique NamemRNA_H-paniculata_contig4120.10611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4120.10611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4120contigH-paniculata_contig4120:2214..2788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.8424776-CDS-H-paniculata_contig4120:2213..23861622930257.8424776-CDS-H-paniculata_contig4120:2213..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4120 2214..2386 +
1691481213.4899383-CDS-H-paniculata_contig4120:2213..23861691481213.4899383-CDS-H-paniculata_contig4120:2213..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4120 2214..2386 +
1622930257.857277-CDS-H-paniculata_contig4120:2718..27881622930257.857277-CDS-H-paniculata_contig4120:2718..2788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4120 2719..2788 +
1691481213.5032907-CDS-H-paniculata_contig4120:2718..27881691481213.5032907-CDS-H-paniculata_contig4120:2718..2788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4120 2719..2788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4120.10611.1prot_H-paniculata_contig4120.10611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4120 2214..2788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4120.10611.1

>prot_H-paniculata_contig4120.10611.1 ID=prot_H-paniculata_contig4120.10611.1|Name=mRNA_H-paniculata_contig4120.10611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MTPPLYLPRRLSGFVENTEHLHRRLPLDRTQRTVVRVSREVRAKSGVESD
DTLHHRMLLSDLLSLHRTSSKAAAMLLTSS*
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mRNA from alignment at H-paniculata_contig4120:2214..2788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4120.10611.1 ID=mRNA_H-paniculata_contig4120.10611.1|Name=mRNA_H-paniculata_contig4120.10611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig4120:2214..2788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCCCCCCTGTATCTGCCGCGACGTCTGAGCGGCTTCGTCGAGAA
CACTGAGCACCTCCACCGTCGCTTGCCACTCGATCGCACTCAAAGAACGG
TTGTTCGGGTTTCGCGCGAAGTACGCGCCAAGAGCGGTGTAGAGTCTGAC
GATACGCTCCATCATCGCATGCTGCAACTCCCACCTTTCAAAAATTCAAC
AAGCGGAAAGGGGTTGGTGGGAGGTGGTGTTTTACAAAAGAGTGAAAGCG
GAGAAATGGCAACACCAAAAAACCATCACTGCGAGCTAGAGGGGGGCGGG
GGCGGGGGAGAACAGCGGAGAAAGGCAACACCAAAAAATCATCACTGCGG
GCTAGAGGGGGGGGGGAGAGAACAGCGAACACCGCATAACTCGGGAAACA
ACAGACATTGGTAGACATCAGGGGCGTACCGTATCCACACTTGTCACTCT
AGAATATTCATAGTTGCATCCTACTCTAGCCGTCTCCATGTGGGAGCCCC
GTAAGGTTGTCCGATCTTTTGTCGTTGCACCGAACCAGTTCCAAGGCGGC
GGCCATGCTGTTGACTTCATCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4120:2214..2788+

>mRNA_H-paniculata_contig4120.10611.1 ID=mRNA_H-paniculata_contig4120.10611.1|Name=mRNA_H-paniculata_contig4120.10611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig4120:2214..2788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCCCCCCTGTATCTGCCGCGACGTCTGAGCGGCTTCGTCGAGAA
CACTGAGCACCTCCACCGTCGCTTGCCACTCGATCGCACTCAAAGAACGG
TTGTTCGGGTTTCGCGCGAAGTACGCGCCAAGAGCGGTGTAGAGTCTGAC
GATACGCTCCATCATCGCATGCTATGACGCCCCCCCTGTATCTGCCGCGA
CGTCTGAGCGGCTTCGTCGAGAACACTGAGCACCTCCACCGTCGCTTGCC
ACTCGATCGCACTCAAAGAACGGTTGTTCGGGTTTCGCGCGAAGTACGCG
CCAAGAGCGGTGTAGAGTCTGACGATACGCTCCATCATCGCATGCTGTTG
TCCGATCTTTTGTCGTTGCACCGAACCAGTTCCAAGGCGGCGGCCATGCT
GTTGACTTCATCTTGAGTTGTCCGATCTTTTGTCGTTGCACCGAACCAGT
TCCAAGGCGGCGGCCATGCTGTTGACTTCATCTTGA
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