mRNA_H-paniculata_contig412.10610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig412.10610.1
Unique NamemRNA_H-paniculata_contig412.10610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig412.10610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig412contigH-paniculata_contig412:27176..27644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size271
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930257.4188151-CDS-H-paniculata_contig412:27177..272611622930257.4188151-CDS-H-paniculata_contig412:27177..27261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 27178..27261 -
1691481213.310563-CDS-H-paniculata_contig412:27177..272611691481213.310563-CDS-H-paniculata_contig412:27177..27261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 27178..27261 -
1622930257.4407232-CDS-H-paniculata_contig412:27461..276441622930257.4407232-CDS-H-paniculata_contig412:27461..27644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 27462..27644 -
1691481213.3222768-CDS-H-paniculata_contig412:27461..276441691481213.3222768-CDS-H-paniculata_contig412:27461..27644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig412 27462..27644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig412.10610.1prot_H-paniculata_contig412.10610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig412 27178..27644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig412.10610.1

>prot_H-paniculata_contig412.10610.1 ID=prot_H-paniculata_contig412.10610.1|Name=mRNA_H-paniculata_contig412.10610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
SSAAALRGRPGLTGRRGMVTPLFVALQFGRALAMRLCMQAGANENFRDKE
RSLVANVIGESCTTQPRRRRPIRSSEPRSSWKSDVPWRT
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mRNA from alignment at H-paniculata_contig412:27176..27644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig412.10610.1 ID=mRNA_H-paniculata_contig412.10610.1|Name=mRNA_H-paniculata_contig412.10610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at H-paniculata_contig412:27176..27644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGCGCTGCTGCGCTTCGGGGCCGACCCGGACTTACTGGCCGACGAGG
TATGGTTACGCCGTTGTTCGTCGCGTTGCAGTTCGGCCGGGCGCTGGCCA
TGAGATTGTGCATGCAGGCTGGCGCGAACGAGAACTTTCGGGACAAGGAA
CGATCCTTGGTGGCGAATGTCATCGGTGAATCGGTAGGTCTGCAGTAGTA
GTTTGGTGTACAGTGGTACGTGGTACTTTGTGGTGGTGGTGTCGATGGTG
ATGGTGTGGTTGTGGCCGCTGTAATTGCTGTGGGTCTTGCAATTAACGTA
CCACTAGTACGTGTTGTTATTGTTGTTATTGTTGTTATTGTCGTTGTTGT
TATTGTCGTTGTTGTTGTTGTTCACACGCACAGTGCACCACGCAGCCACG
AAGGCGCCGCCCGATACGCTCAAGCGAGCCTAGATCATCCTGGAAATCCG
ACGTACCCTGGCGCACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig412:27176..27644-

>mRNA_H-paniculata_contig412.10610.1 ID=mRNA_H-paniculata_contig412.10610.1|Name=mRNA_H-paniculata_contig412.10610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig412:27176..27644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGCGCTGCTGCGCTTCGGGGCCGACCCGGACTTACTGGCCGACGAGG
TATGGTTACGCCGTTGTTCGTCGCGTTGCAGTTCGGCCGGGCGCTGGCCA
TGAGATTGTGCATGCAGGCTGGCGCGAACGAGAACTTTCGGGACAAGGAA
CGATCCTTGGTGGCGAATGTCATCGGTGAATCGTCGAGCGCTGCTGCGCT
TCGGGGCCGACCCGGACTTACTGGCCGACGAGGTATGGTTACGCCGTTGT
TCGTCGCGTTGCAGTTCGGCCGGGCGCTGGCCATGAGATTGTGCATGCAG
GCTGGCGCGAACGAGAACTTTCGGGACAAGGAACGATCCTTGGTGGCGAA
TGTCATCGGTGAATCGTGCACCACGCAGCCACGAAGGCGCCGCCCGATAC
GCTCAAGCGAGCCTAGATCATCCTGGAAATCCGACGTACCCTGGCGCACG
TGCACCACGCAGCCACGAAGGCGCCGCCCGATACGCTCAAGCGAGCCTAG
ATCATCCTGGAAATCCGACGTACCCTGGCGCACG
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