mRNA_H-paniculata_contig41123.10594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41123.10594.1
Unique NamemRNA_H-paniculata_contig41123.10594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5KKB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.060e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNVV 216
            DN+ A  +  N  S  W++HIDV+HH +R+  E G ++V +V + EQHAD+  KAL R+ FE H + ++  V
Sbjct:   32 DNERAIALAENPLSSSWSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADIRTKALPRNLFEVHRDFVLGSV 103
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5JDY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN+
Sbjct:  190 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 260
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.870e-11
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA ++ HN  +   ++HIDV+HH +R+ VE  ++ + +V +  QHAD L KA+ + SF  H + +MN+
Sbjct:   48 DNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 118
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.880e-11
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN+
Sbjct:  524 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594
[Close]
BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-10
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN+
Sbjct: 1123 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1193
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-10
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN+
Sbjct: 1503 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1573
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.020e-10
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN+
Sbjct: 1826 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 1896
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BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.350e-10
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMN 210
            DNQGA  +  N  S   ++HIDV++H +R    +G + + +V T EQHAD+L KAL +SS + H   LMN
Sbjct:  437 DNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
[Close]
BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5JV54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV54_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.550e-10
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA  +  N HS   T+HIDV+ H +R    +G   V +V T EQHAD+L KAL R+S + H   LM++
Sbjct:  766 DNQGAIALVQNPHSSGRTKHIDVRVHFIRGLFRSGDTSVKFVPTTEQHADLLTKALSRTSLQYHRRKLMSL 836
[Close]
BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.220e-10
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 DNQGAEKMTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALDRSSFEKHVNALMNV 213
            DNQGA ++ HN  +   ++HIDV+HH +R+ VE  ++ + +V T  QHAD L KA+ + SF  H + +MN+
Sbjct:  305 DNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41123.10594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKB7_9PHAE3.060e-1141.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY5_9PHAE5.300e-1143.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH6_9PHAE5.870e-1140.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE9.880e-1143.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE1.010e-1043.66CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE1.010e-1043.66CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE1.020e-1043.66Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE1.350e-1044.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV54_9PHAE2.550e-1046.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE3.220e-1042.25Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41123contigH-paniculata_contig41123:132..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.8120344-UTR-H-paniculata_contig41123:131..1521622930255.8120344-UTR-H-paniculata_contig41123:131..152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41123 132..152 +
1691481212.7046494-UTR-H-paniculata_contig41123:131..1521691481212.7046494-UTR-H-paniculata_contig41123:131..152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41123 132..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.8272038-CDS-H-paniculata_contig41123:152..3501622930255.8272038-CDS-H-paniculata_contig41123:152..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41123 153..350 +
1691481212.716511-CDS-H-paniculata_contig41123:152..3501691481212.716511-CDS-H-paniculata_contig41123:152..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41123 153..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41123.10594.1prot_H-paniculata_contig41123.10594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41123 153..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41123.10594.1

>prot_H-paniculata_contig41123.10594.1 ID=prot_H-paniculata_contig41123.10594.1|Name=mRNA_H-paniculata_contig41123.10594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MTHNKHSRRWTRHIDVKHHIVRDAVETGKVDVVYVGTGEQHADVLAKALD
RSSFEKHVNALMNVV*
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mRNA from alignment at H-paniculata_contig41123:132..350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41123.10594.1 ID=mRNA_H-paniculata_contig41123.10594.1|Name=mRNA_H-paniculata_contig41123.10594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig41123:132..350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAATCAAGGGGCCGAGAAGATGACCCACAATAAGCACAGCAGGCGGTG
GACGCGTCACATCGATGTGAAACACCACATTGTTCGCGATGCGGTTGAGA
CTGGGAAGGTTGACGTAGTCTATGTGGGGACGGGAGAGCAGCACGCGGAC
GTACTCGCGAAAGCTCTGGATAGGAGTTCTTTTGAGAAGCACGTAAACGC
GTTGATGAATGTTGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41123:132..350+

>mRNA_H-paniculata_contig41123.10594.1 ID=mRNA_H-paniculata_contig41123.10594.1|Name=mRNA_H-paniculata_contig41123.10594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig41123:132..350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCACAATAAGCACAGCAGGCGGTGGACGCGTCACATCGATGTGAA
ACACCACATTGTTCGCGATGCGGTTGAGACTGGGAAGGTTGACGTAGTCT
ATGTGGGGACGGGAGAGCAGCACGCGGACGTACTCGCGAAAGCTCTGGAT
AGGAGTTCTTTTGAGAAGCACGTAAACGCGTTGATGAATGTTGTGTGAAT
GACCCACAATAAGCACAGCAGGCGGTGGACGCGTCACATCGATGTGAAAC
ACCACATTGTTCGCGATGCGGTTGAGACTGGGAAGGTTGACGTAGTCTAT
GTGGGGACGGGAGAGCAGCACGCGGACGTACTCGCGAAAGCTCTGGATAG
GAGTTCTTTTGAGAAGCACGTAAACGCGTTGATGAATGTTGTGTGA
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