mRNA_H-paniculata_contig4111.10590.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4111.10590.1
Unique NamemRNA_H-paniculata_contig4111.10590.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4111.10590.1 vs. uniprot
Match: A0A6H5KNJ1_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.240e-48
Identity = 82/137 (59.85%), Postives = 105/137 (76.64%), Query Frame = 1 
Query:    1 MLSSTGLPDPFPASSDTYYDDTVRKLREVGYVNCLVFVVNSERITPTLIRNYGILYRAFNKLACVKIFVLRRETRFNALGLADQDKIVERGKETVNSIMEASKLKRWRARQFFILTNGRGDEQDKQVKQIREQVKNA 411
            +L + GLPDP P +SDTYY+DTV KLR VGY N ++FVV  ER+TPTLI+NYG+LYRA N+L CVK+FVLRRET +  L  ADQ+      + TVN I++A+ LK +   QFF+LTNG G+EQDKQVK +REQVK++
Sbjct:  229 VLDTPGLPDPLPRNSDTYYNDTVTKLRSVGYANAILFVVTQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKADQEAHESESRSTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKNMREQVKSS 365
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BLAST of mRNA_H-paniculata_contig4111.10590.1 vs. uniprot
Match: D7FTA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA3_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 4.640e-45
Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 1 
Query:   25 DPFPASSDTYYDDTVRKLREVGYVNCLVFVVNSERITPTLIRNYGILYRAFNKLACVKIFVLRRETRFNALGLADQDKIVERGKETVNSIMEASKLKRWRARQFFILTNGRGDEQDKQVKQIREQVK 405
            +P P +SDTYY+DTV KLR VGY N ++FVV  ER+TPTLI+NYG+LYRA N+L CVK+FVLRRET +  L  +DQ+      + TVN I++A+ LK +   QFF+LTNG G+EQDKQVK +REQVK
Sbjct:   21 EPKPRNSDTYYNDTVTKLRSVGYANAILFVVTQERVTPTLIKNYGLLYRALNRLDCVKMFVLRRETSYLLLNKSDQEAHESESRRTVNQILDATNLKNFSKMQFFMLTNGSGEEQDKQVKYMREQVK 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4111.10590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNJ1_9PHAE3.240e-4859.85G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7FTA3_ECTSI4.640e-4559.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4111contigH-paniculata_contig4111:16019..16429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.2797568-CDS-H-paniculata_contig4111:16018..164291622930255.2797568-CDS-H-paniculata_contig4111:16018..16429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4111 16019..16429 +
1691481212.4964166-CDS-H-paniculata_contig4111:16018..164291691481212.4964166-CDS-H-paniculata_contig4111:16018..16429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4111 16019..16429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4111.10590.1prot_H-paniculata_contig4111.10590.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4111 16019..16429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4111.10590.1

>prot_H-paniculata_contig4111.10590.1 ID=prot_H-paniculata_contig4111.10590.1|Name=mRNA_H-paniculata_contig4111.10590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MLSSTGLPDPFPASSDTYYDDTVRKLREVGYVNCLVFVVNSERITPTLIR
NYGILYRAFNKLACVKIFVLRRETRFNALGLADQDKIVERGKETVNSIME
ASKLKRWRARQFFILTNGRGDEQDKQVKQIREQVKNA
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mRNA from alignment at H-paniculata_contig4111:16019..16429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4111.10590.1 ID=mRNA_H-paniculata_contig4111.10590.1|Name=mRNA_H-paniculata_contig4111.10590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig4111:16019..16429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATCCTCCACAGGCTTGCCGGACCCGTTTCCCGCCAGCTCGGACAC
GTACTACGATGATACGGTGCGAAAACTGCGCGAGGTAGGGTACGTGAACT
GTCTGGTGTTCGTGGTCAACAGCGAACGAATTACCCCGACGCTGATTCGA
AACTACGGGATATTGTATCGGGCGTTCAACAAGCTGGCGTGCGTAAAGAT
TTTCGTGCTTCGTCGAGAGACTCGGTTCAATGCTCTGGGGTTGGCAGATC
AAGATAAAATCGTGGAGCGGGGGAAGGAGACGGTGAACTCGATAATGGAG
GCGTCGAAGCTGAAGAGGTGGAGGGCAAGACAATTCTTCATCCTCACGAA
TGGTCGGGGAGATGAACAGGACAAGCAGGTCAAGCAGATCCGGGAGCAGG
TGAAAAACGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4111:16019..16429+

>mRNA_H-paniculata_contig4111.10590.1 ID=mRNA_H-paniculata_contig4111.10590.1|Name=mRNA_H-paniculata_contig4111.10590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig4111:16019..16429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATCCTCCACAGGCTTGCCGGACCCGTTTCCCGCCAGCTCGGACAC
GTACTACGATGATACGGTGCGAAAACTGCGCGAGGTAGGGTACGTGAACT
GTCTGGTGTTCGTGGTCAACAGCGAACGAATTACCCCGACGCTGATTCGA
AACTACGGGATATTGTATCGGGCGTTCAACAAGCTGGCGTGCGTAAAGAT
TTTCGTGCTTCGTCGAGAGACTCGGTTCAATGCTCTGGGGTTGGCAGATC
AAGATAAAATCGTGGAGCGGGGGAAGGAGACGGTGAACTCGATAATGGAG
GCGTCGAAGCTGAAGAGGTGGAGGGCAAGACAATTCTTCATCCTCACGAA
TGGTCGGGGAGATGAACAGGACAAGCAGGTCAAGCAGATCCGGGAGCAGG
TGAAAAACGCTATGTTATCCTCCACAGGCTTGCCGGACCCGTTTCCCGCC
AGCTCGGACACGTACTACGATGATACGGTGCGAAAACTGCGCGAGGTAGG
GTACGTGAACTGTCTGGTGTTCGTGGTCAACAGCGAACGAATTACCCCGA
CGCTGATTCGAAACTACGGGATATTGTATCGGGCGTTCAACAAGCTGGCG
TGCGTAAAGATTTTCGTGCTTCGTCGAGAGACTCGGTTCAATGCTCTGGG
GTTGGCAGATCAAGATAAAATCGTGGAGCGGGGGAAGGAGACGGTGAACT
CGATAATGGAGGCGTCGAAGCTGAAGAGGTGGAGGGCAAGACAATTCTTC
ATCCTCACGAATGGTCGGGGAGATGAACAGGACAAGCAGGTCAAGCAGAT
CCGGGAGCAGGTGAAAAACGCT
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