mRNA_H-paniculata_contig41103.10589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41103.10589.1
Unique NamemRNA_H-paniculata_contig41103.10589.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A2ZSD3_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZSD3_HIBSY)

HSP 1 Score: 65.9 bits (159), Expect = 4.070e-11
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
            RGFSQQ+ LD+ + F+P    ++V++++A+T   DW +WQ+DVK AF     D E++M
Sbjct:  723 RGFSQQYGLDYDETFSPVAKLTTVRVLLALTANKDWNLWQMDVKNAFLHGELDREIYM 780          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A2K3PAL9_TRIPR (Copia protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PAL9_TRIPR)

HSP 1 Score: 64.3 bits (155), Expect = 7.760e-11
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
            +GF Q+H LDF QVFAP     +V++V+A+T +  W M+Q DVK AF   + + EV+MK
Sbjct:   11 KGFLQRHGLDFDQVFAPVARIETVRLVVAMTSDKGWSMYQFDVKSAFLDGSSEEEVYMK 69          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: UPI001893ED1C (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI001893ED1C)

HSP 1 Score: 61.6 bits (148), Expect = 1.500e-10
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
            +G++Q+H +D+ +VFAP     +V+M+IA   +N W ++QLDVK AF Q     +VF++
Sbjct:   82 KGYTQEHGVDYTEVFAPVARMDTVRMIIAFAAQNGWTLYQLDVKSAFLQGELKEDVFVE 140          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A3ASL8_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ASL8_HIBSY)

HSP 1 Score: 63.9 bits (154), Expect = 1.950e-10
Identity = 23/58 (39.66%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
            RGFSQQ+ LD+ ++F+P    ++V++++A+    DW +WQ+DVK +F     D E++M
Sbjct: 1291 RGFSQQYELDYDEIFSPVAKLTTVRVLLALATNKDWNLWQMDVKNSFLHGKLDREIYM 1348          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A6A3C414_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C414_HIBSY)

HSP 1 Score: 62.0 bits (149), Expect = 9.280e-10
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    4 GFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
            GFSQQ+ LD+ + F+P    ++V++++A+ V  DW +WQ+DVK  F     D E++M
Sbjct:  727 GFSQQYGLDYDETFSPVAKLTTVRVLLALAVNKDWNLWQMDVKNTFLHGELDREIYM 783          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: UPI0006AAE13E (uncharacterized protein LOC106349937 n=4 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAE13E)

HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
            RGF+Q +  D++  FAP     ++++++++    +WG+WQ+DVK AF Q   + EV+M+
Sbjct:  978 RGFTQTYGEDYIDTFAPVAKLHTIRIILSIATNLEWGLWQMDVKNAFLQGELEDEVYMQ 1036          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
            RGF+Q +  D+++ FAP     +V++V+A+     WG+WQ+DVK AF Q   + +V+M
Sbjct:  959 RGFTQTYGSDYMETFAPVAKLHTVRVVLALATNLSWGLWQMDVKNAFLQGELEDDVYM 1016          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: Q9ZQK0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQK0_ARATH)

HSP 1 Score: 60.5 bits (145), Expect = 3.250e-9
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
            RGF+Q +  D+L  FAP     +V++V+++T   +W +WQ+DVK AF Q   + +V+MK
Sbjct:  959 RGFTQTYGEDYLDTFAPVAKLHTVRVVLSLTTNLEWDLWQMDVKNAFLQGELEEKVYMK 1017          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A1R3H507_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H507_COCAP)

HSP 1 Score: 60.1 bits (144), Expect = 4.410e-9
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFMK 177
            RGF+Q++ +D+ + FAP    +SV+ ++AV     W ++Q+DVK AF   +FD EV+MK
Sbjct:  493 RGFTQEYGIDYEETFAPVAHITSVRTLLAVAAVKRWELFQMDVKNAFLNGDFDEEVYMK 551          
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Match: A0A8D9HD07_BRACM ((field mustard) hypothetical protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9HD07_BRACM)

HSP 1 Score: 60.1 bits (144), Expect = 4.440e-9
Identity = 23/58 (39.66%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQANFDFEVFM 174
            RGF+Q +  D+++ FAP     ++++V+++ V   WG+WQ+DVK AF Q   + EV+M
Sbjct: 1073 RGFTQIYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELEDEVYM 1130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41103.10589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2ZSD3_HIBSY4.070e-1143.10Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A2K3PAL9_TRIPR7.760e-1147.46Copia protein n=1 Tax=Trifolium pratense TaxID=575... [more]
UPI001893ED1C1.500e-1040.68uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A6A3ASL8_HIBSY1.950e-1039.66Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3C414_HIBSY9.280e-1040.35PLAC8 family protein n=1 Tax=Hibiscus syriacus Tax... [more]
UPI0006AAE13E3.250e-935.59uncharacterized protein LOC106349937 n=4 Tax=Brass... [more]
Q9FWZ5_ARATH3.250e-939.66Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
Q9ZQK0_ARATH3.250e-940.68Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A1R3H507_COCAP4.410e-942.37Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8D9HD07_BRACM4.440e-939.66(field mustard) hypothetical protein n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41103contigH-paniculata_contig41103:1..177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog3750.XP_008392761.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37Y16@33090,3GNW0@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.220926-CDS-H-paniculata_contig41103:0..1771622930255.220926-CDS-H-paniculata_contig41103:0..177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41103 1..177 +
1691481212.4867246-CDS-H-paniculata_contig41103:0..1771691481212.4867246-CDS-H-paniculata_contig41103:0..177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41103 1..177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41103.10589.1prot_H-paniculata_contig41103.10589.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41103 1..177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41103.10589.1

>prot_H-paniculata_contig41103.10589.1 ID=prot_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
RGFSQQHNLDFLQVFAPTVAASSVKMVIAVTVENDWGMWQLDVKQAFNQA
NFDFEVFMK
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mRNA from alignment at H-paniculata_contig41103:1..177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41103.10589.1 ID=mRNA_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig41103:1..177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGGTTTAGCCAGCAACACAACCTTGATTTTCTCCAAGTGTTTGCTCC TACGGTAGCCGCTTCCAGTGTGAAGATGGTAATTGCTGTTACTGTCGAAA ACGACTGGGGAATGTGGCAACTTGATGTAAAACAGGCTTTTAATCAGGCG AATTTCGATTTCGAGGTGTTTATGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig41103:1..177+

>mRNA_H-paniculata_contig41103.10589.1 ID=mRNA_H-paniculata_contig41103.10589.1|Name=mRNA_H-paniculata_contig41103.10589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig41103:1..177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGGTTTAGCCAGCAACACAACCTTGATTTTCTCCAAGTGTTTGCTCC
TACGGTAGCCGCTTCCAGTGTGAAGATGGTAATTGCTGTTACTGTCGAAA
ACGACTGGGGAATGTGGCAACTTGATGTAAAACAGGCTTTTAATCAGGCG
AATTTCGATTTCGAGGTGTTTATGAAGCGAGGGTTTAGCCAGCAACACAA
CCTTGATTTTCTCCAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGA
AGATGGTAATTGCTGTTACTGTCGAAAACGACTGGGGAATGTGGCAACTT
GATGTAAAACAGGCTTTTAATCAGGCGAATTTCGATTTCGAGGTGTTTAT
GAAG
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