mRNA_H-paniculata_contig41101.10588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41101.10588.1
Unique NamemRNA_H-paniculata_contig41101.10588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 7.220e-17
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME-ASDVS 171
             DFDFT+TKFWVNG+RG SCH V+ ESGL  + +H+ T++LR+HYYP+E A D+S
Sbjct:   12 TDFDFTLTKFWVNGKRGDSCHAVIDESGLLGEGFHKRTSELRDHYYPLEVAPDLS 66          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.140e-15
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   13 DFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME-ASDVS 171
            DFDFT+TKFWVNG+RG SCH V+  SGL  + +H+ T +LR HYYP+E A D+S
Sbjct:   47 DFDFTLTKFWVNGKRGDSCHAVIDGSGLLGEGFHKRTWELRNHYYPLEVAPDLS 100          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A7S3LZW9_9STRA (5'-nucleotidase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZW9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.360e-10
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   13 DFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME 156
            DFDFT+TKF++NG RG+SCH ++ + GL + EYH+    L+  YYP+E
Sbjct:   79 DFDFTITKFYMNGVRGASCHKIIEDCGLMAAEYHDEAQGLQAKYYPLE 126          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A2R5G5J1_9STRA (5'-nucleotidase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5J1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.740e-10
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPMEAS 162
            +DFD+TMT FWV   RG SCH  + E GL    YH V   L+E Y+P+E S
Sbjct:  914 IDFDYTMTTFWVGEERGYSCHRTIEECGLLPDSYHRVARGLQEKYFPLEIS 964          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: W7TPE8_9STRA (5'-nucleotidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPE8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.830e-8
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   13 DFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPMEASDVSLSGPGKLGIL 201
            D+DFT+T F++NGRR  SCH  + +  L S  YHE    L+E+YY  E  D SLS   K+ ++
Sbjct:   78 DWDFTLTHFFLNGRRACSCHKAIEDCDLLSAAYHEKAQALQEYYYAKEV-DPSLSVAEKVPLM 139          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A7S3DJJ1_9EUKA (5'-nucleotidase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DJJ1_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 3.390e-7
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPMEAS 162
             DFD+TM+KF+  G++GSS H  +    L   EYH+   ++++ YYP+E S
Sbjct:   75 TDFDYTMSKFFFEGKKGSSSHGAIEACNLLGDEYHQKVIEVKDKYYPLEIS 125          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A388LLW2_CHABU (5'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLW2_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 1.750e-6
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME 156
             DFD T+TKF VNGR+G +CH ++++    + EY     +L EHYYP+E
Sbjct: 1370 ADFDMTLTKFRVNGRKGQTCHALLSQE---NPEYDRKRQQLYEHYYPLE 1415          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: D8M5R1_BLAHO (5'-nucleotidase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M5R1_BLAHO)

HSP 1 Score: 52.4 bits (124), Expect = 3.020e-6
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   13 DFDFTMTKFWVNG-RRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME 156
            DFD+T++ F+  G +R  SCH ++ +  LFS++YH+ T  L++ YYP+E
Sbjct:   40 DFDYTLSTFYKEGTQRNPSCHGILEQCQLFSEDYHKATRALQQEYYPIE 88          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: A0A068TX58_COFCA (5'-nucleotidase n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068TX58_COFCA)

HSP 1 Score: 51.6 bits (122), Expect = 5.560e-6
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPME 156
             DFD T+TK+W++GRRG S H ++ +    S EY E   KL E+Y+P+E
Sbjct:   38 ADFDATLTKYWIDGRRGQSSHGLLRQG---SPEYDEKRQKLYEYYHPLE 83          
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Match: UPI001CC52C9F (cytosolic 5'-nucleotidase 3-like isoform X1 n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001CC52C9F)

HSP 1 Score: 51.6 bits (122), Expect = 5.820e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   10 VDFDFTMTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPMEAS 162
            VDFD T+TK+WVNGRRG S H ++ +    + EY     +L E+Y+P+E S
Sbjct:   85 VDFDATLTKYWVNGRRGQSSHNLLQQK---NPEYDSKRQQLFEYYHPLEFS 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41101.10588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDF4_ECTSI7.220e-1761.825'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JI70_9PHAE8.140e-1561.115'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A7S3LZW9_9STRA2.360e-1052.085'-nucleotidase n=2 Tax=Spumella elongata TaxID=89... [more]
A0A2R5G5J1_9STRA2.740e-1050.985'-nucleotidase n=1 Tax=Hondaea fermentalgiana Tax... [more]
W7TPE8_9STRA2.830e-844.445'-nucleotidase n=2 Tax=Monodopsidaceae TaxID=4250... [more]
A0A7S3DJJ1_9EUKA3.390e-741.185'-nucleotidase n=1 Tax=Palpitomonas bilix TaxID=6... [more]
A0A388LLW2_CHABU1.750e-646.945'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 ... [more]
D8M5R1_BLAHO3.020e-642.865'-nucleotidase n=1 Tax=Blastocystis hominis TaxID... [more]
A0A068TX58_COFCA5.560e-646.945'-nucleotidase n=1 Tax=Coffea canephora TaxID=493... [more]
UPI001CC52C9F5.820e-647.06cytosolic 5'-nucleotidase 3-like isoform X1 n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41101contigH-paniculata_contig41101:1333..1533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D8LDF4
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.1
EC3.1.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size201
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.1514626-CDS-H-paniculata_contig41101:1332..15061622930255.1514626-CDS-H-paniculata_contig41101:1332..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41101 1333..1506 -
1691481212.4667518-CDS-H-paniculata_contig41101:1332..15061691481212.4667518-CDS-H-paniculata_contig41101:1332..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41101 1333..1506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930255.1641474-UTR-H-paniculata_contig41101:1506..15331622930255.1641474-UTR-H-paniculata_contig41101:1506..1533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41101 1507..1533 -
1691481212.4775975-UTR-H-paniculata_contig41101:1506..15331691481212.4775975-UTR-H-paniculata_contig41101:1506..1533Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41101 1507..1533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41101.10588.1prot_H-paniculata_contig41101.10588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41101 1333..1506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41101.10588.1

>prot_H-paniculata_contig41101.10588.1 ID=prot_H-paniculata_contig41101.10588.1|Name=mRNA_H-paniculata_contig41101.10588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MTKFWVNGRRGSSCHMVVTESGLFSQEYHEVTTKLREHYYPMEASDVSLS
GPGKLGIL
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mRNA from alignment at H-paniculata_contig41101:1333..1533-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41101.10588.1 ID=mRNA_H-paniculata_contig41101.10588.1|Name=mRNA_H-paniculata_contig41101.10588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig41101:1333..1533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCTAGCGTAGACTTTGACTTCACTATGACGAAGTTCTGGGTCAATGG CAGGAGAGGATCATCCTGCCACATGGTGGTGACGGAGTCTGGGCTGTTCT CACAAGAGTATCACGAGGTCACGACGAAGCTGAGGGAGCACTACTACCCC ATGGAGGCGAGTGACGTCAGCTTGAGTGGGCCGGGAAAATTGGGGATACT T
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Coding sequence (CDS) from alignment at H-paniculata_contig41101:1333..1533-

>mRNA_H-paniculata_contig41101.10588.1 ID=mRNA_H-paniculata_contig41101.10588.1|Name=mRNA_H-paniculata_contig41101.10588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig41101:1333..1533- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGTTCTGGGTCAATGGCAGGAGAGGATCATCCTGCCACATGGT
GGTGACGGAGTCTGGGCTGTTCTCACAAGAGTATCACGAGGTCACGACGA
AGCTGAGGGAGCACTACTACCCCATGGAGGCGAGTGACGTCAGCTTGAGT
GGGCCGGGAAAATTGGGGATACTTATGACGAAGTTCTGGGTCAATGGCAG
GAGAGGATCATCCTGCCACATGGTGGTGACGGAGTCTGGGCTGTTCTCAC
AAGAGTATCACGAGGTCACGACGAAGCTGAGGGAGCACTACTACCCCATG
GAGGCGAGTGACGTCAGCTTGAGTGGGCCGGGAAAATTGGGGATACTT
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