mRNA_H-paniculata_contig4102.10574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: D7FVG7_ECTSI (Protochlorophyllide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG7_ECTSI) HSP 1 Score: 422 bits (1084), Expect = 2.570e-144 Identity = 219/277 (79.06%), Postives = 242/277 (87.36%), Query Frame = 1
Query: 277 MSRGNFAKAAAATGLAALLADTPSVADSGPTRTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAFACDLSSLESVRSFAEAWGDKPIDSLCLNAGMAPSTKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
M+RG F+ AA LAALLA PS A+ RTVV+TGA+SG+GLDAATKLV++GH+V+VACRTEAKAK AA SGAAGAFACDLSSLESVR F +AW KPID+LCLNAGMAPSTKGS Y +EGFE T+GTNHLGHFLLANLL+K LEAG+L PRL+VTASSVHDPDTPGGN GSKATLGD+ GLE Y+AA+G KKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSAR+S VKVDCFSPGLIPSSGLFRNQNPIFSKIFD AAT ++KV
Sbjct: 8 MTRGGFSVTAAGAALAALLAG-PSQAEGAGKRTVVLTGASSGIGLDAATKLVAMGHDVHVACRTEAKAKAAAEASGAAGAFACDLSSLESVRGFVDAWKGKPIDTLCLNAGMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMGGLERYVAADGDSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNLIKV 283
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A836C919_9STRA (Protochlorophyllide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C919_9STRA) HSP 1 Score: 350 bits (898), Expect = 5.140e-116 Identity = 189/291 (64.95%), Postives = 220/291 (75.60%), Query Frame = 1
Query: 247 ANNFGSDNDGMSRGNFA----KAAAATGLAALLADTPSVADSGPTRTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAFACDLSSLESVRSFAEAWGDKPIDSLCLNAGMAPSTKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
+N+ G D SR FA +AAA L AL P A + +T+V+TGA+SG+GLDAATKL + GH+VYVACRTE KA TAA S A GA+ACDLSSL+S+R+F + WGD+PID LCLNAGMAP+TKG Y+ EGFEV IGTNHLGHFLLANLLL LEA +PRLIVTASSVHDP TPGG+VGSKATLGD++GL A G KFDMVDGG YDGDKAYKDSKLCNVLFT E RRL+ + SKV V+CFSPGLIP+SGLFR+QNP+F K+F AA VL +
Sbjct: 10 SNSSGGSGDATSRRGFAGVLATSAAAGSLLALQGAVPP-ASAADKKTIVITGASSGIGLDAATKLAAAGHDVYVACRTEDKAATAAFTSKATGAYACDLSSLDSIRTFVKLWGDRPIDVLCLNAGMAPATKGEAQYTKEGFEVAIGTNHLGHFLLANLLLDRLEASGAAEPRLIVTASSVHDPATPGGDVGSKATLGDMAGLA--ARATGAAPKFDMVDGGSYDGDKAYKDSKLCNVLFTRELNRRLTKKDSKVHVNCFSPGLIPTSGLFRSQNPLFVKVFGFAAGSVLGI 297
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A7S2XW84_9STRA (Protochlorophyllide reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW84_9STRA) HSP 1 Score: 337 bits (865), Expect = 3.400e-110 Identity = 176/262 (67.18%), Postives = 208/262 (79.39%), Query Frame = 1
Query: 307 AATGLAALLADTPSVADSGPTRTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAFACDLSSLESVRSFAEAWGDKPIDSLCLNAGMAPSTKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAAT 1092
AA +A++L +V GP +TVV+TGANSG+GL A +LV GH+V++ACRT KAKTAA ++GAAG F CDLSSLESVR FA+ W + ID+LCLNAGMAP+TKGS ++ GFE TIG NHLGHFLLANLLLK+LE+ SL PRL+VTASSVHDPD PGG+VGS ATLGDLSGL+ +L KF+MVDG YDGDKAYKDSKLCNVLFT E QRRL A SKV V+CFSPGLIPS+GLFRNQNP+F+K FD+A +
Sbjct: 83 AAAAVASILGLPENVLAEGPKKTVVITGANSGVGLTGARQLVESGHDVFLACRTLKKAKTAAEQTGAAGYFECDLSSLESVRKFAKDWDNTAIDALCLNAGMAPNTKGSPKFTDAGFEETIGVNHLGHFLLANLLLKNLESSSLPQPRLVVTASSVHDPDQPGGDVGSTATLGDLSGLKGWL----DTGKFEMVDGNAYDGDKAYKDSKLCNVLFTEECQRRLDANGSKVTVNCFSPGLIPSTGLFRNQNPLFTKAFDIATS 340
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A7S3YA04_HETAK (Protochlorophyllide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA04_HETAK) HSP 1 Score: 317 bits (812), Expect = 5.020e-103 Identity = 165/243 (67.90%), Postives = 194/243 (79.84%), Query Frame = 1
Query: 370 RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAFACDLSSLESVRSFAEAW----GDKPIDSLCLNAGMAPSTKGSVV-YSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDL 1083
+T+++TGANSG+GL KL + GH VYVACRT+AKA AA + GAAGAF CDLSSLESVR FA AW G +P+D+LCLNAGMAP+TK Y+++GFE TIG NHLGHFLLA+LL+K+LE+ +PRL+VTASSVHDPD PGG+VGSKA LGDL GLE Y +GT FDMVDGG +DGDKAYKDSKLCNVLFT E QRRL+A+ SKV +CFSPGLIP+SGLFRNQNP+FS F L
Sbjct: 50 KTIIITGANSGVGLAGGKKLAARGHAVYVACRTQAKADRAAQEIGAAGAFECDLSSLESVRGFAAAWAAQQGGRPVDALCLNAGMAPNTKQPAAKYTAQGFEETIGVNHLGHFLLASLLIKNLESSKQANPRLVVTASSVHDPDQPGGDVGSKAALGDLLGLEGYFQ-KGT---FDMVDGGAFDGDKAYKDSKLCNVLFTTEMQRRLAAKGSKVTCNCFSPGLIPTSGLFRNQNPLFSGAFGL 288
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: W7TGF5_9STRA (Protochlorophyllide reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGF5_9STRA) HSP 1 Score: 301 bits (772), Expect = 6.470e-96 Identity = 157/247 (63.56%), Postives = 189/247 (76.52%), Query Frame = 1
Query: 370 RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAFACDLSSLESVRSFAEAWGDKPIDSLCLNAGMAPSTKGSVV-YSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
+T+++TGANSG+GLDA+ KL + GH+V+VACRT +KAK AA S AAGAF CDLSSL SV EAWG++PID+LCLNAG+A ST ++ +++EGFE TIG NH GHFLLA LL +LE SL PRL+VTASSVHDP TPGGNVG ATLG+L G ++L K+F+MVDGG Y GDKAYKDSKL NVLFT E RRL RKSKV+ DCFSPGLIPS+GLFR+QN +F +F+ A VL V
Sbjct: 129 KTILITGANSGIGLDASKKLAAAGHDVFVACRTLSKAKEAARVSNAAGAFECDLSSLSSVERLVEAWGNRPIDALCLNAGVAMSTSETMPHFTAEGFEETIGVNHFGHFLLAQKLLPNLEKSSLAHPRLVVTASSVHDPSTPGGNVGPGATLGNLKGFTDFLEKG---KRFEMVDGGSYSGDKAYKDSKLLNVLFTQEMSRRLLDRKSKVRCDCFSPGLIPSTGLFRSQNQLFVGLFNFFAVNVLGV 372
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A7S4M8I2_9STRA (Protochlorophyllide reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8I2_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.000e-76 Identity = 144/260 (55.38%), Postives = 185/260 (71.15%), Query Frame = 1
Query: 370 RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAK-SG-AAGA----FACDLSSLESVRSFAEAWGDKP-------IDSLCLNAGMAPSTKGS-VVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
RTVV+TG NSG+G DAA ++ + GH++ +ACRT+ KA+ AAA+ SG GA ACDL++L+SVRSF E G KP +D+LCLNAG+A +T V+ + EGFE+T+GTNHLGHF L NL+L ++ + R++VTAS VHDP +PGG GS ATLGDLSG+ +FDMVDGG +D DKAYKDSKLCNVLFT E QRRL A +K +CF+PGLI +GLFR+QNP+F+K+FD AAT +LKV
Sbjct: 109 RTVVLTGCNSGIGYDAAVRMAARGHKIVMACRTDEKARDAAARVSGDVPGADVIPAACDLANLDSVRSFVE--GIKPALGEAGGVDALCLNAGLARNTAAKEVLRTMEGFELTVGTNHLGHFYLCNLILPQVKKNT---GRIVVTASGVHDPKSPGGAQGSLATLGDLSGITSG-------PQFDMVDGGPFDPDKAYKDSKLCNVLFTRELQRRLDASGVGIKANCFNPGLIVGTGLFRDQNPLFTKVFDFAATDLLKV 356
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A7S1ZS25_TRICV (Protochlorophyllide reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZS25_TRICV) HSP 1 Score: 248 bits (634), Expect = 1.540e-76 Identity = 141/250 (56.40%), Postives = 177/250 (70.80%), Query Frame = 1
Query: 370 RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGA--------FACDLSSLESVRSFAE-AWGDK-PIDSLCLNAGMAPSTKGS-VVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLA 1086
RTVVVTG+NSG+G DAA+++ + GH V +ACRT KAK AA + ++ CDL+SL+SVRSF E A G ID+LCLNAG+A T V+ + EGFE+T+GTNH GHF LANL+L ++ + R++VTAS VHDPD+PGG GSKATLGDLSGL A G FDMVDGG +D DKAYKDSKLCNV FT E QRRL + +KV+CF+PGLI +GLFR+QNP+F+K+FD+A
Sbjct: 101 RTVVVTGSNSGIGFDAASRMAARGHRVVLACRTLTKAKDAAERVASSVGRDDLDLIPAECDLASLDSVRSFVEYAKGSVGEIDALCLNAGLARDTSAKEVLRTKEGFELTVGTNHFGHFYLANLILPQVKRNT---GRIVVTASGVHDPDSPGGAQGSKATLGDLSGL-----ANGPY--FDMVDGGPFDADKAYKDSKLCNVFFTRELQRRLDLGDTGIKVNCFNPGLIVGTGLFRDQNPLFTKVFDIA 340
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A061R0A7_9CHLO (Protochlorophyllide reductase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R0A7_9CHLO) HSP 1 Score: 244 bits (624), Expect = 4.180e-74 Identity = 142/259 (54.83%), Postives = 177/259 (68.34%), Query Frame = 1
Query: 370 RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAK-------SGAAGAFACDLSSLESVRSFAEAWGDKP--IDSLCLNAGMAPS-TKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEA-GSLGD--PRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
+ ++VTGANSG+G DAA KLVS GH+V++ACRT KA++A + +G A CDLSSL SV++FAEA+ K +D LCLNAG+ S T G + + +GFEVT+G NHLGHF L NLLL LEA G+ G R++VTAS VHDP++PGG+VG A LG L G+ E AA F+ VDGG YD DKAYKDSKLCNVLF E QRRLSA+ ++V+V+ F PGLI +G FRNQ P F K+FD A V V
Sbjct: 92 KNIIVTGANSGIGFDAARKLVSQGHKVFLACRTLEKAESARDRISAEPLTAGQAIPMECDLSSLRSVKNFAEAFKAKNERLDVLCLNAGLQYSGTNGPIRRTEDGFEVTVGVNHLGHFYLTNLLLPELEAAGADGQCLARVVVTASEVHDPESPGGSVGRGAALGGLRGMAEQGAA------FEXVDGGAYDPDKAYKDSKLCNVLFARELQRRLSAKGARVEVNSFGPGLITRTGFFRNQQPFFVKLFDFATNDVFHV 344
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A4RX04_OSTLU (Protochlorophyllide reductase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RX04_OSTLU) HSP 1 Score: 240 bits (612), Expect = 2.280e-73 Identity = 141/254 (55.51%), Postives = 170/254 (66.93%), Query Frame = 1
Query: 376 VVVTGANSGLGLDAATKLVSLGHEVYV-ACRTEAKAKTAAAK----SGAAGA----FACDLSSLESVRSFA-EAWGDKPIDSLCLNAGMAPSTKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDPRLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
VV+TG+NSG+GLDAATKL + G V V ACRT AKA+ A A + A GA CDLSSL+SVR+F E +D+LCLNAG+ S V + +GFE T G NHLGHFLLANLLL+ LE S PR++VTAS VHDP +PGG+VGS A +GDL GLE AA F+M DG +D DKAYKDSKL N+LF E +RRL AR SK+ V+ F PGLI +GLFRNQNP+F K+FD A + V
Sbjct: 7 VVITGSNSGIGLDAATKLAASGDWVVVLACRTRAKAEAAKANILSATNADGANIECVECDLSSLDSVRAFVREVRKTGGVDALCLNAGVEYSGDPVVHRTRDGFEETFGVNHLGHFLLANLLLEDLEKSSEAHPRIVVTASEVHDPASPGGSVGSGAHIGDLRGLERDGAA------FEMADGEAFDADKAYKDSKLANMLFMYELERRLQARNSKITVNAFGPGLITRTGLFRNQNPLFVKVFDFATNEIFHV 254
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Match: A0A7R9XZ78_MICPS (Protochlorophyllide reductase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XZ78_MICPS) HSP 1 Score: 238 bits (608), Expect = 2.790e-72 Identity = 147/300 (49.00%), Postives = 185/300 (61.67%), Query Frame = 1
Query: 304 AAATGLAALLADTP-SVADSGPT------------RTVVVTGANSGLGLDAATKLVSLGHEVYVACRTEAKAKTAAAKSGAAGAF------------ACDLSSLESVRSFAEAWGDKPIDSLCLNAGMAPSTKGSVVYSSEGFEVTIGTNHLGHFLLANLLLKSLEAGSLGDP-------RLIVTASSVHDPDTPGGNVGSKATLGDLSGLEEYLAAEGTLKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARKSKVKVDCFSPGLIPSSGLFRNQNPIFSKIFDLAATYVLKV 1107
A A +AL A TP ++AD PT ++VVVTG+NSG+GLD A KL + G++V +ACRT AKA+ A A A A CDL+SL+S+R+FA + P+D+L LNAG+ S +V +++GFE+T+G NHLGHFLL NLLL LEA + P R++VTAS VHDP +PGGNVG A LGDL GL E AA F+M++G YD DKAYKDSKLCNVLF E QRRL S V V+ F PGLI +GLFR QNP+F K+FD A + V
Sbjct: 2 ALALASSALAATTPVAIADEAPTXXXXXXXXXXDRKSVVVTGSNSGIGLDGAAKLAARGYDVTLACRTLAKAQAAKASIEATAAANGVVLTGSLTPAECDLASLDSIRAFAASRRAAPLDALVLNAGVEFSGDNTVRRTADGFEITVGVNHLGHFLLTNLLLPDLEAAASASPQSDGTTPRVVVTASEVHDPASPGGNVGLGAGLGDLRGLAENGAA------FEMLNGSPYDADKAYKDSKLCNVLFARELQRRLRDAGSVVTVNTFGPGLITRTGLFRAQNPLFVKVFDFATNEIFHV 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4102.10574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4102.10574.1 >prot_H-paniculata_contig4102.10574.1 ID=prot_H-paniculata_contig4102.10574.1|Name=mRNA_H-paniculata_contig4102.10574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp MKWSPPMLYLAGAQFYQHAPAFVQICSPPGFLLGHSSKGTDLSISNIAAVback to top mRNA from alignment at H-paniculata_contig4102:9283..15836+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4102.10574.1 ID=mRNA_H-paniculata_contig4102.10574.1|Name=mRNA_H-paniculata_contig4102.10574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6554bp|location=Sequence derived from alignment at H-paniculata_contig4102:9283..15836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4102:9283..15836+ >mRNA_H-paniculata_contig4102.10574.1 ID=mRNA_H-paniculata_contig4102.10574.1|Name=mRNA_H-paniculata_contig4102.10574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig4102:9283..15836+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |