mRNA_H-paniculata_contig41011.10571.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41011.10571.1
Unique NamemRNA_H-paniculata_contig41011.10571.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41011.10571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41011contigH-paniculata_contig41011:148..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41011.10571.1prot_H-paniculata_contig41011.10571.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41011 281..601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.1259465-UTR-H-paniculata_contig41011:147..2801622930253.1259465-UTR-H-paniculata_contig41011:147..280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41011 148..280 +
1691481211.4071257-UTR-H-paniculata_contig41011:147..2801691481211.4071257-UTR-H-paniculata_contig41011:147..280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41011 148..280 +
1622930253.158053-UTR-H-paniculata_contig41011:601..7261622930253.158053-UTR-H-paniculata_contig41011:601..726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41011 602..726 +
1691481211.4316099-UTR-H-paniculata_contig41011:601..7261691481211.4316099-UTR-H-paniculata_contig41011:601..726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41011 602..726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.1419933-CDS-H-paniculata_contig41011:280..6011622930253.1419933-CDS-H-paniculata_contig41011:280..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41011 281..601 +
1691481211.4198377-CDS-H-paniculata_contig41011:280..6011691481211.4198377-CDS-H-paniculata_contig41011:280..601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41011 281..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41011.10571.1

>prot_H-paniculata_contig41011.10571.1 ID=prot_H-paniculata_contig41011.10571.1|Name=mRNA_H-paniculata_contig41011.10571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MEHNHILHLISYIPFLTNHTNPEENEASILEQFFPDSVTTDIFHPKQPGQ
YIIIIKDRCCSVLKPKNCAVYILNHAPSCSKPLPPSAWGGSPVLSAGYNS
LLPDYG*
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mRNA from alignment at H-paniculata_contig41011:148..726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41011.10571.1 ID=mRNA_H-paniculata_contig41011.10571.1|Name=mRNA_H-paniculata_contig41011.10571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=579bp|location=Sequence derived from alignment at H-paniculata_contig41011:148..726+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAAGATATATTTTACGAAAAAATATGTACATAATTCGTGTTCTCTACTC
TCCCAATTCAGAGCAATTAACTATTTATCGAGGAGAATATTTCACAATGT
TGCCGTACCCCACTTCTTGGGATATAAATTTGTATGGAACACAATCACAT
TCTACATCTGATCAGTTATATACCCTTCCTTACCAATCACACCAACCCGG
AAGAGAACGAAGCCTCTATACTCGAACAATTTTTTCCTGACTCGGTTACA
ACAGACATTTTTCACCCTAAACAACCAGGACAGTATATTATAATAATTAA
AGATCGATGCTGCAGTGTACTCAAACCAAAAAACTGCGCCGTCTATATTT
TGAATCATGCGCCATCCTGCTCCAAACCGCTTCCCCCGTCGGCATGGGGA
GGGTCACCCGTACTTAGCGCAGGGTACAACTCTCTTCTACCCGATTATGG
ATAGAAACAAGGTATCCTCGGTGAGGCGGTGTGCTGGAATGCCTCATAAT
AATTTTCGAGAGCCTTCCCTCCCCTCCCCGATCACCACCACCACTACCAC
CATCGTCAGCACCCATAGCAATACTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig41011:148..726+

>mRNA_H-paniculata_contig41011.10571.1 ID=mRNA_H-paniculata_contig41011.10571.1|Name=mRNA_H-paniculata_contig41011.10571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig41011:148..726+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACAATCACATTCTACATCTGATCAGTTATATACCCTTCCTTAC
CAATCACACCAACCCGGAAGAGAACGAAGCCTCTATACTCGAACAATTTT
TTCCTGACTCGGTTACAACAGACATTTTTCACCCTAAACAACCAGGACAG
TATATTATAATAATTAAAGATCGATGCTGCAGTGTACTCAAACCAAAAAA
CTGCGCCGTCTATATTTTGAATCATGCGCCATCCTGCTCCAAACCGCTTC
CCCCGTCGGCATGGGGAGGGTCACCCGTACTTAGCGCAGGGTACAACTCT
CTTCTACCCGATTATGGATAGATGGAACACAATCACATTCTACATCTGAT
CAGTTATATACCCTTCCTTACCAATCACACCAACCCGGAAGAGAACGAAG
CCTCTATACTCGAACAATTTTTTCCTGACTCGGTTACAACAGACATTTTT
CACCCTAAACAACCAGGACAGTATATTATAATAATTAAAGATCGATGCTG
CAGTGTACTCAAACCAAAAAACTGCGCCGTCTATATTTTGAATCATGCGC
CATCCTGCTCCAAACCGCTTCCCCCGTCGGCATGGGGAGGGTCACCCGTA
CTTAGCGCAGGGTACAACTCTCTTCTACCCGATTATGGATAG
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