mRNA_H-paniculata_contig41002.10569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig41002.10569.1
Unique NamemRNA_H-paniculata_contig41002.10569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A6H5KL15_9PHAE (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL15_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.020e-24
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRPP 141
            RYCIDNGAMIAQAGVFQYMH G T L +TTCTQRFRTDAVDVAWRPP
Sbjct:   51 RYCIDNGAMIAQAGVFQYMHGGGTALEDTTCTQRFRTDAVDVAWRPP 97
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: D8LJI1_ECTSI (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.050e-22
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRPP 141
            RYCIDNGAMIAQAGVFQYMH G T L +TTCTQRFRTDAVDVAWRPP
Sbjct:  246 RYCIDNGAMIAQAGVFQYMHGGGTELEDTTCTQRFRTDAVDVAWRPP 292
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A024UVZ9_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UVZ9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-17
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWR 135
            RYCIDNGAMIAQAG  Q+   GPTPLAE TCTQRFRTD VDV WR
Sbjct:  322 RYCIDNGAMIAQAGALQFRSLGPTPLAECTCTQRFRTDEVDVVWR 366
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: M4BH92_HYAAE (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BH92_HYAAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.960e-16
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWR 135
            RYCIDNGAMIAQAGV Q+ +   TPL E TCTQRFRTD V V WR
Sbjct:   15 RYCIDNGAMIAQAGVLQFQYGDTTPLEEATCTQRFRTDEVPVIWR 59
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A836CHZ2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.880e-16
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 YCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRP 138
            YCIDNGAMIAQAG+F++     TP+A+TTCTQRFRTDAV+V WRP
Sbjct:  317 YCIDNGAMIAQAGLFEFQQGMSTPIADTTCTQRFRTDAVEVVWRP 361
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A7S3HK42_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK42_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.110e-15
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRPP 141
            RYCIDNG MIAQAG+F Y     TPL E TCTQRFRTDA+D+ WR P
Sbjct:  312 RYCIDNGGMIAQAGIFAYQMNMVTPLEEATCTQRFRTDAMDIVWRHP 358
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: F0W7Z9_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Albugo TaxID=65356 RepID=F0W7Z9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.180e-15
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWR 135
            RYCIDNGAMIAQAGV QY +   TP  E TCTQRFRTD VDV WR
Sbjct:  320 RYCIDNGAMIAQAGVLQYQYGEVTPFEEATCTQRFRTDEVDVVWR 364
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A7S2W3U1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3U1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.950e-15
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRP 138
            RYCIDNGAMIAQAGV QY H   TPL + T TQRFRTDA +V WRP
Sbjct:  367 RYCIDNGAMIAQAGVMQYQHGYETPLEDATVTQRFRTDATEVMWRP 412
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A5J4Z0L2_PORPP (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0L2_PORPP)

HSP 1 Score: 75.5 bits (184), Expect = 7.460e-15
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWR 135
            R+CIDNGAMIA AG+ ++MHTG TP  ET CTQRFRTD V V+WR
Sbjct:  308 RFCIDNGAMIAWAGLLEFMHTGATPFKETWCTQRFRTDQVHVSWR 352
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BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Match: A0A8K1CIJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIJ7_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 7.540e-15
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RYCIDNGAMIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWR 135
            RYCIDNGAMIAQAGV QY ++  TPL E TCTQRFRTD V V WR
Sbjct:  309 RYCIDNGAMIAQAGVLQYQYSDITPLHEATCTQRFRTDEVHVIWR 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41002.10569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL15_9PHAE6.020e-2489.36N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ect... [more]
D8LJI1_ECTSI5.050e-2289.36N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ect... [more]
A0A024UVZ9_9STRA4.600e-1780.00Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
M4BH92_HYAAE1.960e-1673.33N6-L-threonylcarbamoyladenine synthase n=1 Tax=Hya... [more]
A0A836CHZ2_9STRA5.880e-1673.33Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S3HK42_9STRA2.110e-1570.21Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
F0W7Z9_9STRA4.180e-1575.56Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2W3U1_9STRA4.950e-1573.91Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A5J4Z0L2_PORPP7.460e-1571.11Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A8K1CIJ7_PYTOL7.540e-1575.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41002contigH-paniculata_contig41002:232..375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LJI1
Preferred nameKAE1
KEGG rclassRC00070,RC00416
KEGG koko:K01409,ko:K09487
KEGG ReactionR10648
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.N(6)-L-threonylcarbamoyladenine synthase activity
EggNOG OGsCOG0533@1,KOG2708@2759
EC2.3.1.234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03110
Exons1
Model size144
Cds size120
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.0072582-CDS-H-paniculata_contig41002:231..3511622930253.0072582-CDS-H-paniculata_contig41002:231..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41002 232..351 -
1691481211.353157-CDS-H-paniculata_contig41002:231..3511691481211.353157-CDS-H-paniculata_contig41002:231..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig41002 232..351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930253.0223498-UTR-H-paniculata_contig41002:351..3751622930253.0223498-UTR-H-paniculata_contig41002:351..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41002 352..375 -
1691481211.3662293-UTR-H-paniculata_contig41002:351..3751691481211.3662293-UTR-H-paniculata_contig41002:351..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig41002 352..375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41002.10569.1prot_H-paniculata_contig41002.10569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig41002 232..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig41002.10569.1

>prot_H-paniculata_contig41002.10569.1 ID=prot_H-paniculata_contig41002.10569.1|Name=mRNA_H-paniculata_contig41002.10569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
MIAQAGVFQYMHTGPTPLAETTCTQRFRTDAVDVAWRPP*
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mRNA from alignment at H-paniculata_contig41002:232..375-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig41002.10569.1 ID=mRNA_H-paniculata_contig41002.10569.1|Name=mRNA_H-paniculata_contig41002.10569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig41002:232..375- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACTGCATAGACAATGGGGCGATGATTGCGCAGGCCGGGGTGTTTCA
GTACATGCACACCGGACCCACGCCTTTGGCCGAGACAACCTGCACTCAAC
GCTTTCGCACGGATGCTGTCGACGTAGCTTGGCGCCCGCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig41002:232..375-

>mRNA_H-paniculata_contig41002.10569.1 ID=mRNA_H-paniculata_contig41002.10569.1|Name=mRNA_H-paniculata_contig41002.10569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig41002:232..375- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGCGCAGGCCGGGGTGTTTCAGTACATGCACACCGGACCCACGCC
TTTGGCCGAGACAACCTGCACTCAACGCTTTCGCACGGATGCTGTCGACG
TAGCTTGGCGCCCGCCGTGAATGATTGCGCAGGCCGGGGTGTTTCAGTAC
ATGCACACCGGACCCACGCCTTTGGCCGAGACAACCTGCACTCAACGCTT
TCGCACGGATGCTGTCGACGTAGCTTGGCGCCCGCCGTGA
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