mRNA_H-paniculata_contig4100.10568.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 231 bits (590), Expect = 1.870e-64 Identity = 125/360 (34.72%), Postives = 183/360 (50.83%), Query Frame = 2
Query: 203 RECTAEELLPTPEEDLRYRWVPLGGHEARGR---------QYDCSCPYTKATYFCSN-GRTDYPLWVPKAVADGVCSSVSGNVLDNHPFPPGASLLFYGNSHLRQTFQGTLLEGGDPKNYIHKTLRNKYCLTHQVVEGIMCLYADKVVRRKVQFLNMFSRFRTEASLLPET-QCRGCLRGHS--DTLVDHSCLAKKDAYRAVRCCDDRGEYELCDGVTVHYHFANNDNNKSVEQALEDFDTSFADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQAFAAANVTYIPVHDMMESMINFTTGVAKGTQNTHFCLPGPPDELGVFLLELIWALYSERSN 1243
R CT ++L+P P + GG++ G +DC+C KA+YFC N G YP W G C + L N P PP +LFYGNSHLRQ VVEGI+C Y+ + R ++ + E +L+ E QCRGC+ H + L++H C++++ A C D+ +E +G +HYHFA+ + NK E AL+ T ++ YD ++ N GN PRM +R A L + G + W + Y G GDVG W E++ F + ++PVH M+ES+ T GV +G N HFC+PGPP+E+G+ LLE+ WA+Y+ER +
Sbjct: 91 RACTVDDLVP-PHGNYEDGGGD-GGYDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWN----TSGACERRERSALQNEPLPPAFRVLFYGNSHLRQ-----------------------------VVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAERGD 415
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 222 bits (565), Expect = 2.140e-61 Identity = 117/324 (36.11%), Postives = 166/324 (51.23%), Query Frame = 2
Query: 299 YDCSCPYT-------KATYFCSN-GRTDYPLWVPKAVADGVCSSVSGNVLDNHPFPPGASLLFYGNSHLRQTFQGTLLEGGDPKNYIHKTLRNKYCLTHQVVEGIMCLYADKVVRRKVQFLNMFSRFRTEASLLPET-QCRGCL--RGHSDTLVDHSCLAKKDAYRAVRCCDDRGEYELCDGVTVHYHFANNDNNKSVEQALEDFDTSFADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQAFAAANVTYIPVHDMMESMINFTTGVAKGTQNTHFCLPGPPDELGVFLLELIWALYSER 1237
+DC+C + A+YFC N G YP W G C + L N P PPG +LFYGNSHLRQ VVEGI+C Y+ + R ++ + E +L+ E QCR C+ R TL++H C+++ A RC DD +E +G +HYHFA+ + NK E AL+ T ++ YD ++ N GN PRM +R A L + G W + Y G GDVG W E++ F + ++PVH M++S+ T GV +G N HFC+PGPP+E+G+ LLE+ WA+Y+ER
Sbjct: 127 FDCTCSGSGRAGRALNASYFCPNLGTGGYPKWS----TSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQ-----------------------------VVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDEDLQCRSCVYSRKLRRTLLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAER 417
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 187 bits (475), Expect = 9.370e-49 Identity = 118/365 (32.33%), Postives = 177/365 (48.49%), Query Frame = 2
Query: 203 RECTAEELLP---TPEEDLRYRWVPLGGHEARGRQYDCSCPYTKATYFCSN-GRTDYPLWVPKAVADGVCSSVSGNVLDNH--PFPPGASLLFYGNSHLRQTFQGTLLEGGDPKNYIHKTLRNKYCLTHQVVEGIMCLYADKVVRRKVQFLNMFSRFRTEASLLP-ETQCRGCL--RGHSDTLVDHSCLAKKDAYRAVRCCDDRGEYELC----DGVTVHYHFANNDNNKSVEQALEDF---DTSFADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQA-FAAANVTYIPVHDMMESMINFTTGVAKGT--QNTHFCLPGPPDELGVFLLELIWALYSERS 1240
R CT +ELLP +P L W G + Y C C ++KA YFC N G YP WVP+AV G C S + + + PFPP + +LFYGNSH+RQT +E I+CL+ VV ++++F++ + T +P +T CR C DTL++ C+ +G VH++FAN+D +K + AL D S+ Y + AN GN P + D + AA AG F WL+TY G GD +W + R+ F + ++ V D+++ + + T V + T + HFC+PGPPDE+G+ LL+L+WAL+ E++
Sbjct: 120 RYCTVDELLPLKKSPHSALSSEWSQGQGGVWKP-PYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQT-----------------------------LEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSY--YTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHEKT 452
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE) HSP 1 Score: 154 bits (388), Expect = 3.190e-39 Identity = 82/217 (37.79%), Postives = 116/217 (53.46%), Query Frame = 2
Query: 590 MCLYADKVVRRKVQFLNMFSRFRTEASLLPETQCRGCLRGHSDTLVDHSCLAKKDAYRAVRCCDDRGEYELCDGVTVHYHFANNDNNKSVEQALEDF-DTSFADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQAFAAANVTYIPVHDMMESMINFTTGVAKGTQNTHFCLPGPPDELGVFLLELIWALYSER 1237
MC++ +KVV ++V + + + + QCR C G VD+ CL + A RC DD EY +G VHY+FA D KS++ AL + S + YD + AN GN P+M D AA F+WL+TY+G G V W ++ F+ + ++ V M+ + NFT G + + HFCLPGPPDELG LL++IWALY ER
Sbjct: 1 MCIHWNKVVAKRVTYQQPGNG--VDRWIHGNAQCRACT-GFDQQQVDYGCLDQDVRDDACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVEDRVDPHFCLPGPPDELGFLLLKIIWALYQER 214
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE) HSP 1 Score: 152 bits (384), Expect = 1.150e-38 Identity = 81/217 (37.33%), Postives = 117/217 (53.92%), Query Frame = 2
Query: 590 MCLYADKVVRRKVQFLNMFSRFRTEASLLPETQCRGCLRGHSDTLVDHSCLAKKDAYRAVRCCDDRGEYELCDGVTVHYHFANNDNNKSVEQALEDF-DTSFADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQAFAAANVTYIPVHDMMESMINFTTGVAKGTQNTHFCLPGPPDELGVFLLELIWALYSER 1237
MC+Y +KVV ++ + + + + QCR C G V++ CL + A RC DD E+ +G VHY+FA+ D NKS++ AL + S + YD ++AN GN P M D AA F+WL+TY G G V W ++ F + ++ V MM + NFT G +G + HFCLPGPPDELG+ LL++IWA++ ER
Sbjct: 1 MCIYWNKVVAKRATYQQPGNG--VDRWIHGNAQCRACT-GLQQQQVNYGCLDQDVRDDACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGNDPHFCLPGPPDELGLLLLKIIWAIHQER 214
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI) HSP 1 Score: 129 bits (325), Expect = 6.490e-31 Identity = 66/171 (38.60%), Postives = 98/171 (57.31%), Query Frame = 2
Query: 758 YRAV----RCCDDRGEYELCDGVTVHYHFANNDNNKSVEQALEDFDTS-FADYDFIIANAGNTPRMHTDRAVRAAQLSHDAGASFIWLTTYNGIGDVGKWTAEDRQA-FAAANVTYIPVHDMMESMINFTTGVAKGT--QNTHFCLPGPPDELGVFLLELIWALYSERSNT 1246
YR+V RC DD GE+ +G VH++FAN D +K + AL D F+ Y + AN GN P + D + AA AG F WL+TY G GD +W + R+ F + ++ V DM++ + T V + T + HFC+PGPPDE+G+ LL+L+WAL+ E++ +
Sbjct: 18 YRSVVETLRCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEKNGS 188
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.730e-26 Identity = 107/382 (28.01%), Postives = 155/382 (40.58%), Query Frame = 2
Query: 167 DELLRPRTKTDARECTAEELLPTPEEDLRYRWVPLGGHEARGRQYDCSCPYTKATYFCSN-GRTDYPLWVPKAVADGVCSSVSGNVLDNHPFPPGASLLFYGNSHLRQTFQGTLLEGGDPKNYIHKTLRNKYCLTHQVVEGIMCLYADKVVRRKVQFLNMFSRFRTEASLLPETQ--CRGCLRGHSDTLVDHSCLAKKDAYRAVRCCDDRGEYELCDGVTVHYHFANNDNNKSVEQAL-EDFDTSFADYDFIIANAGNTPRMHTDR-AVRAAQLSHDAGASFIWLTTYNGIGDVGKW------------TAEDRQAFAAANVTYIPVHDMMESMINFTTGV-AKGTQNTHFCLPGPPDELGVFLLE----LIWALYSERSNT 1246
D RP+++ D C+ +L E PL YDCSCP KA Y C D P+WVP+A+ G C ++ N L PPGA +LF GNSH+RQ +VE +C + +V RR V A +L + CRG H + A + C DDR + L +G TV Y F + + NK+++Q + F TS DYD ++ANAGN P M A L +W+ Y G + ++ TA R A A +T+ + + + +FT A +++ HFC+P P D++ L L W L ER +
Sbjct: 35 DGAQRPQSREDLPFCSPAQLADGSWEQRTAHQEPL---------YDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPHNPL----VPPGARVLFAGNSHMRQ-----------------------------LVESGLCAHRHEVARRNVS-----------AGVLEDISIPCRGFRLKHYLDGCPYEPSVLGVAPGQLECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDMLLSSFADEVGPLVTQGIIKALWVPLYWGSDALDEFRDARTLNNGNLPTASQRAALDA--ITFFDLRILTSGVASFTVAKRAHLSRDGHFCMPSPVDDISDTLFAHVRYLWWHLALERGGS 361 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4100.10568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4100.10568.1 >prot_H-paniculata_contig4100.10568.1 ID=prot_H-paniculata_contig4100.10568.1|Name=mRNA_H-paniculata_contig4100.10568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=416bp MRLWICRILLAGFCLGVLAFFACTHQDGGDAQPLLLFRKGDDSWHSPYCAback to top mRNA from alignment at H-paniculata_contig4100:12083..15218+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4100.10568.1 ID=mRNA_H-paniculata_contig4100.10568.1|Name=mRNA_H-paniculata_contig4100.10568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3136bp|location=Sequence derived from alignment at H-paniculata_contig4100:12083..15218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4100:12083..15218+ >mRNA_H-paniculata_contig4100.10568.1 ID=mRNA_H-paniculata_contig4100.10568.1|Name=mRNA_H-paniculata_contig4100.10568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig4100:12083..15218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |