mRNA_H-paniculata_contig41.10558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41.10558.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI) HSP 1 Score: 153 bits (387), Expect = 2.160e-34 Identity = 164/541 (30.31%), Postives = 229/541 (42.33%), Query Frame = 1
Query: 955 EQPEFVVLGLVGQNADRMLLLPTAVKREVTIGRSPAHSVVLEW-DRDGDSRAKKSLLLARTKKKPVLPNPLPALATALAWARQLGPGALQAEHL---LPTLPFPALAPPVAPTPNNVGSSNTNTSTLCTPGHKNGNIITKSTTATTASNEKGSVRSGSRDAAEPSPVSRFLHPENRNESLSVGAAWMLGHLVFGQQAGAARVESLMGGRKAPISRVSVAGSEATALGLLSCPGIGWNLDPADVVQTLSEAGDGVF--YTAAATSMSTGRSDEGKEGGSGAEAEAEAEEVGSAGREACAACDELVAVGLCTRSQDRGWLELVPEVELAFELILKVFVNNWSLDRISLAHTALGSRTTGPMTMGVLPRSIHSLTPEPISPTDLSKLSGGTSAGVVLQKNAESTKKGMVPHRQEPKQRLVGREQRLVGVGVGRLSEGVGVLCVKLRTWCIEVTRRFDSCEKDQYLLWKIIKRSENPSKGANAAEVWNGSMAGALALLGGXXXX------TSVNTSSNNCNWMACLSRGERILEPACVRLKEAVE 2541
+QP FV++G++ + R LLLPT +R +G + SV + W D G SR + +L RTK KP NPLP LA LAW R+L PGAL L L TL AL P + NT LS+GAAW+L HL+FG G R+ +VS++G+EA A+ LL CP IGW+ P +V+Q +SE G G+ Y+ + T + G G+ A DELV G + + L L ++E A EL+LK+F+ NW +DR A ALG TGP+ G+ P I SL SG QK ST + G ++R GR+ VG LCV+L +WC +V R +D +L + + + W G MA A LLGG S+ +++ W+A LS+ ER+LE AC+RLK+A++
Sbjct: 124 DQPPFVMMGMLDDS--RALLLPTTRERREVMGSLSSASVPVTWTDSTGQSR---TAILTRTKAKPKPCNPLPMLANLLAWMRELPPGALPENRLRIRLETLL--ALQSPSKSVSRQSSTIGKNTXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLGAAWLLAHLMFGMDGGGKATGPFE--REILNGKVSLSGAEANAMPLLLCPLIGWSPRPREVIQAMSE-GAGILCAYSVELAAFET--------------------QTGICGK----AADELVHAGFARKVEFGEMLALDQKMEDACELVLKIFLCNWDVDREVRAQVALGLTKTGPVASGLCPPDIPSL------------FSG-------RQKWRSSTTA------------VRGGDER--SSCRGRMGGLVGDLCVRLHSWCHQVMR----AGRDLRVLLLLQVLKGETAGDLTSQREWTGPMAQAFGLLGGAEVSYHKRHRDSIGGTAS-AGWVASLSKEERLLEVACLRLKQAMK 583 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41.10558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41.10558.1 >prot_H-paniculata_contig41.10558.1 ID=prot_H-paniculata_contig41.10558.1|Name=mRNA_H-paniculata_contig41.10558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=871bp MEQNRELPTASVLPKLANQQHNYPSRGDERSRQLRRQRARVMAEGSLELAback to top mRNA from alignment at H-paniculata_contig41:3340..23719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41.10558.1 ID=mRNA_H-paniculata_contig41.10558.1|Name=mRNA_H-paniculata_contig41.10558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20380bp|location=Sequence derived from alignment at H-paniculata_contig41:3340..23719- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41:3340..23719- >mRNA_H-paniculata_contig41.10558.1 ID=mRNA_H-paniculata_contig41.10558.1|Name=mRNA_H-paniculata_contig41.10558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5226bp|location=Sequence derived from alignment at H-paniculata_contig41:3340..23719- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |