mRNA_H-paniculata_contig40958.10553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40958.10553.1
Unique NamemRNA_H-paniculata_contig40958.10553.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: D8LN19_ECTSI (Na+/H+ antiporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN19_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.420e-58
Identity = 101/133 (75.94%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQ---------------AEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P     QGYALKKRNFFKYFHYIFSFGFLGTVIQF+TITVLA Y+SN+ Y++ L+DDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQ               AE+PKLSAVLFGEGVLNDAMSILLF TV
Sbjct:   22 LPPIIFHQGYALKKRNFFKYFHYIFSFGFLGTVIQFITITVLALYASNSQYMSILRDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQPLLCRDAWERQKRNMAEFPKLSAVLFGEGVLNDAMSILLFQTV 154          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A6H5KYD3_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD3_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.710e-58
Identity = 100/118 (84.75%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P     QGYALKKRNFFKYFHYIFSFGFLGTVIQF+TITVLA Y+SN+ Y + L+DDGVPIGLS+HECMLMAAVFSAADEVATLSLIKQAE+PKLSAVLFGEGVLNDAMSILLF TV
Sbjct:  116 LPPIIFHQGYALKKRNFFKYFHYIFSFGFLGTVIQFITITVLALYASNSQYTSMLRDDGVPIGLSVHECMLMAAVFSAADEVATLSLIKQAEFPKLSAVLFGEGVLNDAMSILLFQTV 233          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A835YKQ9_9STRA (Sodium/hydrogen exchanger family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.660e-52
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P     QGYA KKRNFFKYFH+IFSFG +GT+IQF  IT+LA+Y S+   LA ++DDGVPIG SLHECMLMAAV SAADEVATLSLIKQ+EYPKLSAVLFGEGV+NDAMSILLFH V
Sbjct:  132 LPPIIFHQGYAFKKRNFFKYFHHIFSFGIIGTLIQFAVITLLAYYLSSLKSLAIIRDDGVPIGFSLHECMLMAAVLSAADEVATLSLIKQSEYPKLSAVLFGEGVMNDAMSILLFHAV 249          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A4D9D3Z2_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3Z2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.730e-23
Identity = 57/124 (45.97%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAF----LKDDGVPIG--LSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P     QGY+LKKRNFF+YFHYIF+ G +GT++  + +  LA    N  +++     +  D V  G  L +++ +L+++V S+ADEVA L+++ + ++PKLSA+LFGEGVLNDA+SILLF +V
Sbjct:  134 LPPIIFYQGYSLKKRNFFRYFHYIFTLGVVGTLMH-MGVVALALIFLNKAWISLGLPLVGWDDVTKGQALEINDILLLSSVLSSADEVAALAMVNKDDHPKLSALLFGEGVLNDAVSILLFRSV 256          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A7S3NVC6_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NVC6_EUPCR)

HSP 1 Score: 90.5 bits (223), Expect = 6.480e-21
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIG----LSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LK++NFFK   YI  FG LGT+I  V ++          ++    D   P+G    L+  EC+L++AV  A D VA L+++K+ E+P L+++LFGEGV+NDA++IL+F +V
Sbjct:   24 LPPIIFGAGYTLKEKNFFKNIGYITLFGLLGTLISMVVMSA---------FVIIFNDYLFPLGHSQRLTTAECLLLSAVLCATDSVAALAIVKETEFPTLNSILFGEGVVNDAVAILIFKSV 136          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A1R2AVU5_9CILI (Na_H_Exchanger domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AVU5_9CILI)

HSP 1 Score: 95.5 bits (236), Expect = 1.300e-20
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LK ++FF    +I  +G +GT + F+T+  LA++        F++       LSL +C+L+A+V SA D VA +++IK+ +YP+L  +LFGEGVLNDA+SI+LF TV
Sbjct:   72 LPPIIFTAGYTLKSQHFFLNIGFILLYGVVGTFLSFITLGSLAYF--------FVEQGAASTTLSLKDCLLLASVLSATDTVAAITVIKETKYPRLHYILFGEGVLNDAVSIVLFRTV 181          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A077ZYX6_STYLE (Sodium hydrogen exchanger n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZYX6_STYLE)

HSP 1 Score: 95.5 bits (236), Expect = 1.400e-20
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LKK+NF   F YI  FG LGT+I F+ ++ +  + ++      L  D   + LS  EC+L+A+V  A D VA L+++K+  YP L+++LFGEGV+NDA+SILLF  V
Sbjct:   33 LPPIIFAAGYNLKKKNFVSNFGYIALFGVLGTIISFIVLSSMIMFWNDV-----LHSDFSAMRLSSKECLLLASVLCATDTVAALTIVKEKNYPILNSILFGEGVVNDAVSILLFRAV 145          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: A0A7S3IZC5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3IZC5_9SPIT)

HSP 1 Score: 90.9 bits (224), Expect = 2.130e-19
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LK+RNF K F+YI   G  GT+I  V + VL  + +N  Y     D+     L   EC+L+A+V  A D VA L+++K   +P L+++LFGEGV+NDA++IL++  V
Sbjct:   18 LPPIIFAAGYTLKRRNFMKNFNYIVLLGVAGTIISMVCLAVLILWFNNLVY-----DEDDESKLKPVECLLLASVLCATDSVAALAIVKGEVFPTLNSILFGEGVVNDAVAILIYQAV 130          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: J9I262_9SPIT (Sodium/hydrogen exchanger n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I262_9SPIT)

HSP 1 Score: 92.0 bits (227), Expect = 2.380e-19
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LKK+NF   F YI  FG  GT+I F+ ++ +  + ++      L      + LS  EC+L+A+V  A D VA L+++K+  YP L+++LFGEGV+ND++SILLF  V
Sbjct:   33 LPPIIFAAGYNLKKKNFVSNFGYIAMFGIFGTIISFIVLSSMIIFWND-----LLHSHHSNLRLSSKECLLLASVLCATDTVAALTIVKEKNYPTLNSILFGEGVVNDSVSILLFRAV 145          
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Match: Q23MD1_TETTS (Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23MD1_TETTS)

HSP 1 Score: 90.5 bits (223), Expect = 8.850e-19
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTTYLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVLFGEGVLNDAMSILLFHTV 354
            +P      GY LKKR FF+ F YI  +G LGT++ F+ + +L +  +    +    D    + LS  + +L +A   A D VA L++IK  +YPKL +V+FGEG++ND++SI+L+  V
Sbjct:   72 LPPIIFAGGYNLKKRRFFQNFFYINIYGLLGTIVNFIVVWLLTYAVNEAGLIRRYSDFSQSVTLSTRDILLFSATICATDSVAALAMIKSEKYPKLFSVIFGEGMVNDSVSIILYKAV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40958.10553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN19_ECTSI2.420e-5875.94Na+/H+ antiporter n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KYD3_9PHAE2.710e-5884.75Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A835YKQ9_9STRA2.660e-5276.27Sodium/hydrogen exchanger family-domain-containing... [more]
A0A4D9D3Z2_9STRA1.730e-2345.97Na_H_Exchanger domain-containing protein n=2 Tax=M... [more]
A0A7S3NVC6_EUPCR6.480e-2140.16Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1R2AVU5_9CILI1.300e-2041.53Na_H_Exchanger domain-containing protein n=1 Tax=S... [more]
A0A077ZYX6_STYLE1.400e-2043.22Sodium hydrogen exchanger n=1 Tax=Stylonychia lemn... [more]
A0A7S3IZC5_9SPIT2.130e-1940.68Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
J9I262_9SPIT2.380e-1940.68Sodium/hydrogen exchanger n=1 Tax=Oxytricha trifal... [more]
Q23MD1_TETTS8.850e-1938.14Transporter, monovalent cation:proton antiporter-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40958contigH-paniculata_contig40958:144..1276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue6.8e-46
Seed eggNOG ortholog2880.D8LN19
KEGG koko:K12041,ko:K14724
KEGG TC2.A.36.1.12,2.A.36.1.3,2.A.36.1.9
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
Ec32 ortholog descriptionCation/H exchanger, CPA1 family
Ec32 orthologEc-13_002140.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930250.2501886-CDS-H-paniculata_contig40958:143..2961622930250.2501886-CDS-H-paniculata_contig40958:143..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40958 144..296 +
1691481210.0737371-CDS-H-paniculata_contig40958:143..2961691481210.0737371-CDS-H-paniculata_contig40958:143..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40958 144..296 +
1622930250.2633748-CDS-H-paniculata_contig40958:1075..12761622930250.2633748-CDS-H-paniculata_contig40958:1075..1276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40958 1076..1276 +
1691481210.0832682-CDS-H-paniculata_contig40958:1075..12761691481210.0832682-CDS-H-paniculata_contig40958:1075..1276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40958 1076..1276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40958.10553.1prot_H-paniculata_contig40958.10553.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40958 144..1276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40958.10553.1

>prot_H-paniculata_contig40958.10553.1 ID=prot_H-paniculata_contig40958.10553.1|Name=mRNA_H-paniculata_contig40958.10553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MPSSYVPQGYALKKRNFFKYFHYIFSFGFLGTVIQFVTITVLAFYSSNTT
YLAFLKDDGVPIGLSLHECMLMAAVFSAADEVATLSLIKQAEYPKLSAVL
FGEGVLNDAMSILLFHTV
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mRNA from alignment at H-paniculata_contig40958:144..1276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40958.10553.1 ID=mRNA_H-paniculata_contig40958.10553.1|Name=mRNA_H-paniculata_contig40958.10553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1133bp|location=Sequence derived from alignment at H-paniculata_contig40958:144..1276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCTTCCTACGTACCTCAGGGATACGCGCTAAAAAAACGGAACTT CTTCAAGTATTTTCACTACATCTTCAGCTTCGGGTTCTTGGGAACCGTGA TTCAGTTCGTCACCATCACTGTCTTGGCTTTCTACTCCAGCAACACCACA TATGTGAGAGACTGACAGGCAGGCGAGAGAAAAAGAGCCATGGCGAGACA CGATAAAAATGAAGAGGACACACGAAAGTGCCTGGGAAGGGGTTTTGCCC CCCCCCCCCTCCAAGTTAGTCGTTAATCCCGAGGAAGGGTACGACGAAAT CAATTCATTGCCTTTTAAAAAAAAAGAACCCTCCCTCTAGTAGTGGGAGT GAGTGCCCAAAAACTCCTGTGACTCGAGTATCGTGACTTAATCACTCAAA CTACCGAAGGATGCAAGCACGAGTGCAAATGCCATGAATGCTAAAACTCA CGTCTATTGGATGTGTGGAGTATGACCCTTGATTATCTATGGACTGAATA ACCTCGGTCTTTTTCCTCGTATATACTGACATCGAGAAGTAGGGGAGAGC CAATCGTGTCATATTATGCAATTTCATGTCATGTCTACTCGCGGTACACA CACGTGGGCGACACAGTGAAGGATACGGTGCTCCCTTGTAAGAGTACTTG TCTATGTAGGTGCCTGTGAATCAGCCCTTGTTGATTTAGTTCTGCTGATA AGTGTATACAAACAAACATACAACTGAGGTTTAAAGTCAGCTGCACAAGA GAGTTATTGTGTCAGCCTCAGAGCTCTAGTTCGATTAACTTTGGCGGTAT TGGCATACGAATGAGCATTCCAGTTGGTGAAACAGAGGATGTTTTATGCG AATCACCATCTGCCCTCCCATTTCCCCTATCGTGGCTCATTGTTGTTCAT TCCTTACTTGTGTTGTGTGTCATTTTCCATAGTTGGCGTTTTTGAAGGAC GATGGCGTGCCGATCGGGCTATCGCTCCACGAGTGCATGCTGATGGCGGC CGTGTTCAGCGCGGCCGATGAGGTAGCCACTTTGTCGCTCATCAAGCAGG CCGAGTACCCCAAGCTCAGCGCCGTGCTCTTCGGGGAGGGTGTGCTGAAT GACGCCATGAGTATCTTGCTTTTCCACACGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig40958:144..1276+

>mRNA_H-paniculata_contig40958.10553.1 ID=mRNA_H-paniculata_contig40958.10553.1|Name=mRNA_H-paniculata_contig40958.10553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig40958:144..1276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCTTCCTACGTACCTCAGGGATACGCGCTAAAAAAACGGAACTT
CTTCAAGTATTTTCACTACATCTTCAGCTTCGGGTTCTTGGGAACCGTGA
TTCAGTTCGTCACCATCACTGTCTTGGCTTTCTACTCCAGCAACACCACA
TATATGCCTTCTTCCTACGTACCTCAGGGATACGCGCTAAAAAAACGGAA
CTTCTTCAAGTATTTTCACTACATCTTCAGCTTCGGGTTCTTGGGAACCG
TGATTCAGTTCGTCACCATCACTGTCTTGGCTTTCTACTCCAGCAACACC
ACATATTTGGCGTTTTTGAAGGACGATGGCGTGCCGATCGGGCTATCGCT
CCACGAGTGCATGCTGATGGCGGCCGTGTTCAGCGCGGCCGATGAGGTAG
CCACTTTGTCGCTCATCAAGCAGGCCGAGTACCCCAAGCTCAGCGCCGTG
CTCTTCGGGGAGGGTGTGCTGAATGACGCCATGAGTATCTTGCTTTTCCA
CACGGTGTTGGCGTTTTTGAAGGACGATGGCGTGCCGATCGGGCTATCGC
TCCACGAGTGCATGCTGATGGCGGCCGTGTTCAGCGCGGCCGATGAGGTA
GCCACTTTGTCGCTCATCAAGCAGGCCGAGTACCCCAAGCTCAGCGCCGT
GCTCTTCGGGGAGGGTGTGCTGAATGACGCCATGAGTATCTTGCTTTTCC
ACACGGTG
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