mRNA_H-paniculata_contig4088.10546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4088.10546.1
Unique NamemRNA_H-paniculata_contig4088.10546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.620e-27
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYTSVGCDVFLFNYRGYGRSGG ASP  IN D +E+V YLRE +GVTRLAVHGESIGGVAAASVA
Sbjct:  514 FYTSVGCDVFLFNYRGYGRSGGKASPANINKDVREIVTYLRENVGVTRLAVHGESIGGVAAASVA 578
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A1V9YDH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDH8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.170e-17
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT +G +VFLFNYRGYGR+ G  SP A N D   +  YLR E G+TRLA+HGESIGG+ A  VA
Sbjct:  379 FYTKLGINVFLFNYRGYGRTKGYPSPSANNLDGMAIAAYLRRERGITRLAIHGESIGGMVATYVA 443
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A2D4C8H3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8H3_PYTIN)

HSP 1 Score: 83.2 bits (204), Expect = 4.200e-17
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT +GCDV LFNYRGYGRS G  SP A + D   +V+YL+   GVTRL VHGESIGG+ A  +A
Sbjct:  811 FYTDLGCDVLLFNYRGYGRSKGEPSPAAHSADGLAIVQYLQSRRGVTRLGVHGESIGGLVATYLA 875
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A7S2RNC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.710e-16
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAAS 189
            FYT +GC V ++NYRGYGRS G  SP + N D  E+V++LRE  GV R+AVHGESIGG+ A S
Sbjct:  361 FYTEMGCQVIVWNYRGYGRSTGLPSPASNNADIAELVQFLRETCGVPRVAVHGESIGGMVACS 423
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.930e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            +Y+++GC VFLFNYRG+GRS G  +P  +  DA E V+YLRE  G+  + VHGESIGG+ AA+ A
Sbjct:  361 YYSAIGCHVFLFNYRGFGRSQGVPTPARLQADACEAVQYLRERQGMQHVMVHGESIGGMVAAAAA 425
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: T0QHD2_SAPDV (AB hydrolase-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHD2_SAPDV)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT +G +VFLFNYRGYGR+ G  SP A N D   V  YLR E  + RLA+HGESIGG+ A  VA
Sbjct:  377 FYTKLGINVFLFNYRGYGRTKGYPSPHANNLDGMAVAAYLRNEQSIRRLAIHGESIGGMVATHVA 441
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A1W0A6L9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6L9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-15
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT +G +VFLFNYRGYGR+ G  SP+A N D   +V +L ++ G+ R+A+HGESIGG+ A  VA
Sbjct:  368 FYTKLGINVFLFNYRGYGRTKGYPSPEANNRDGMAIVSFLYKDCGIKRIAIHGESIGGMVATYVA 432
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A067CE07_SAPPC (AB hydrolase-1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CE07_SAPPC)

HSP 1 Score: 77.8 bits (190), Expect = 3.290e-15
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT +G +VFLFNYRGYGR+ G  SP A N D   V  YLR +  + RLA+HGESIGG+ A  VA
Sbjct:  380 FYTKLGINVFLFNYRGYGRTKGYPSPHANNLDGMAVAAYLRNDKSIQRLAIHGESIGGMVATHVA 444
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BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A6G0WU86_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU86_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.920e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT  G +VF+FNYRGYGR  G  SP A N D   ++E+L+   G+TR+AVHGESIGG+ A  VA
Sbjct:  396 FYTKFGINVFVFNYRGYGRCKGYPSPHANNMDGMAIIEHLKSR-GITRIAVHGESIGGMVATHVA 459
[Close]
BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Match: A0A5D6XYP4_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYP4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.920e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLAVHGESIGGVAAASVA 195
            FYT + C V ++NYRGYGR+ G  SP+A N D   +V YL+ +  VT++AVHGESIGG+ A  +A
Sbjct:  363 FYTDLDCHVLVYNYRGYGRNAGAPSPRANNLDGLAIVAYLKTQRAVTKIAVHGESIGGMVATYLA 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4088.10546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE1.620e-2784.62AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A1V9YDH8_9STRA4.170e-1761.54Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4C8H3_PYTIN4.200e-1761.54Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2RNC6_9STRA2.710e-1660.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YTB0_9STRA6.930e-1655.38Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
T0QHD2_SAPDV1.290e-1560.00AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
A0A1W0A6L9_9STRA1.290e-1555.38Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CE07_SAPPC3.290e-1558.46AB hydrolase-1 domain-containing protein n=2 Tax=S... [more]
A0A6G0WU86_9STRA2.920e-1456.92AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
A0A5D6XYP4_9STRA2.920e-1452.31AB hydrolase-1 domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4088contigH-paniculata_contig4088:1081..2139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog112098.XP_008613740.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930249.3608077-CDS-H-paniculata_contig4088:1080..11851622930249.3608077-CDS-H-paniculata_contig4088:1080..1185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4088 1081..1185 +
1691481209.6503122-CDS-H-paniculata_contig4088:1080..11851691481209.6503122-CDS-H-paniculata_contig4088:1080..1185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4088 1081..1185 +
1622930249.3826423-CDS-H-paniculata_contig4088:2049..21391622930249.3826423-CDS-H-paniculata_contig4088:2049..2139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4088 2050..2139 +
1691481209.6611645-CDS-H-paniculata_contig4088:2049..21391691481209.6611645-CDS-H-paniculata_contig4088:2049..2139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4088 2050..2139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4088.10546.1prot_H-paniculata_contig4088.10546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4088 1081..2139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4088.10546.1

>prot_H-paniculata_contig4088.10546.1 ID=prot_H-paniculata_contig4088.10546.1|Name=mRNA_H-paniculata_contig4088.10546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
FYTSVGCDVFLFNYRGYGRSGGTASPKAINNDAKEVVEYLREELGVTRLA
VHGESIGGVAAASVA
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mRNA from alignment at H-paniculata_contig4088:1081..2139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4088.10546.1 ID=mRNA_H-paniculata_contig4088.10546.1|Name=mRNA_H-paniculata_contig4088.10546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at H-paniculata_contig4088:1081..2139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTACACCTCTGTGGGCTGTGATGTATTTTTGTTCAACTACCGCGGTTA
CGGGCGGTCTGGCGGCACAGCTTCGCCTAAAGCCATCAACAACGATGCCA
AAGAGGTAGGTGGGCACTGATACCGCAGTTTACACGAGGTAGATCACCCA
GTAGCAGCAGCTTCATCTATAGCAGTAATGGCCATAACGTGCAAGTCAAA
GAGCGTACGATGTGGGTTGATTTTTAGGAGGGTTGGAAGATAAATTCGAG
CGATGAGAGGGTAATGCGAGCAAGCGGTGGCAGCGGCAGCGTGGTCAAAA
TTAAGATCTCGGAAAGGGGTTGGGGACTTTTTTTTTTTTTTTTTTTTTTA
AGAGTCTCAATATATCATCATGAACAGGACCCCACCCTGATCCTCCTCAC
CTCGTTCACATGTCGAGCCTCATTCTCATCCCTTCTTTCCCGCCGTCCGA
TCCCTTCTCGTTTGTCGCCAAGTTCCCTTGGCTCGTTCTTGGGTGTGGCA
TTATTTGAAAGATGGTGATATTGGTCGTGGTAGTGTAGTGGTGATGGTGA
TGGACACGGCAGAGGCTCAGTTTCTACACTTTAAACGTGGCGAGGGGTGT
TTGAGTTTGGTGTGTCACAGGCGTAGCGAGGGCCTGCCTGCTACCGATAG
TACAAAGGGAAAACGCCACACAAGAAGAACTAGTGTCTGGCTGGCCTCCT
GGTTTAAACGGACGTTGAATACTGCAACATCAAAAACTAGCGTATTGTGG
TGTCGATTTGTAGCGGATAATTGGCATCGAACCAAATAAGTGAAGTGTAT
GTGTATGTACCTAATACAGTAGTAGATATTGAGGTCGTGCACGATCTTGG
TCTTGGGCATGAACTTACCTCGGCGCGTGTGTTTTTTACAGGTTAAATGG
TGTGGTGTTGTAGTTAGTGCTTGACCGATCGACCTTTGCGTGCTGCATGG
GAACACTCGTTGTGGCAAGGTGGTGGAATACCTAAGGGAAGAGCTGGGGG
TGACGAGGCTCGCTGTGCACGGCGAGAGCATCGGAGGCGTCGCAGCGGCC
AGTGTCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4088:1081..2139+

>mRNA_H-paniculata_contig4088.10546.1 ID=mRNA_H-paniculata_contig4088.10546.1|Name=mRNA_H-paniculata_contig4088.10546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig4088:1081..2139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTACACCTCTGTGGGCTGTGATGTATTTTTGTTCAACTACCGCGGTTA
CGGGCGGTCTGGCGGCACAGCTTCGCCTAAAGCCATCAACAACGATGCCA
AAGAGTTCTACACCTCTGTGGGCTGTGATGTATTTTTGTTCAACTACCGC
GGTTACGGGCGGTCTGGCGGCACAGCTTCGCCTAAAGCCATCAACAACGA
TGCCAAAGAGGTGGTGGAATACCTAAGGGAAGAGCTGGGGGTGACGAGGC
TCGCTGTGCACGGCGAGAGCATCGGAGGCGTCGCAGCGGCCAGTGTCGCC
GTGGTGGAATACCTAAGGGAAGAGCTGGGGGTGACGAGGCTCGCTGTGCA
CGGCGAGAGCATCGGAGGCGTCGCAGCGGCCAGTGTCGCC
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