mRNA_H-paniculata_contig4086.10544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4086.10544.1
Unique NamemRNA_H-paniculata_contig4086.10544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: D7FYP9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP9_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 2.080e-134
Identity = 218/242 (90.08%), Postives = 225/242 (92.98%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFNKRGKGRRGNADGEREDTEAVVRSFKRQRMGGGGXXXXXTKGGRGRRR 726
            VE+ +KF+TPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVN+EIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPY CDE+TVLVLQERV EAQRMAAREMREADFNK+GK R G  DG  ED E VVRSFKRQRMGG  XXXXX    RG+RR
Sbjct:  608 VEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMREADFNKKGKHRGGGGDGG-EDAETVVRSFKRQRMGGXXXXXXXXXXXRGKRR 848
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A7S2W3B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3B8_9STRA)

HSP 1 Score: 322 bits (825), Expect = 2.130e-108
Identity = 164/215 (76.28%), Postives = 191/215 (88.84%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFNK-RGKGRRGNAD---GERED 633
            VE++HKF+TPKTLVQQYLFIPAK+KDCYLAYVLNEFAGQ+ +VF +TCN +QRVALLLRNLGF AVCLHGQM QPKRLGAL KFKSGQR++LIATDVASRGLDIPSVD+V+N +IP +GK+YIHRVGRTARAGRAGRS+AFVTQYDVEVYQR+EAL+GQKLP +  +E+TVL++ ERV+EAQR+AARE+RE    K +GK RRG A    GE ED
Sbjct:   51 VEVSHKFSTPKTLVQQYLFIPAKYKDCYLAYVLNEFAGQTILVFSATCNGSQRVALLLRNLGFDAVCLHGQMSQPKRLGALNKFKSGQRSILIATDVASRGLDIPSVDVVINFDIPGNGKEYIHRVGRTARAGRAGRSVAFVTQYDVEVYQRLEALLGQKLPSFPAEEETVLIMLERVSEAQRIAARELREILATKGKGKRRRGEASAVAGEAED 265
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A7S2Y335_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y335_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.000e-106
Identity = 156/192 (81.25%), Postives = 178/192 (92.71%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREA 576
            VE++ KF+TP +LVQQYLFIPAK+KDCYLAYVLNEFAGQ+ +VFVSTCN AQRVALLLRNLGFQA+CLHGQM QPKRLGAL KFKSG R +L+ATDVASRGLDIPSVDLV+N +IPSHGKDYIHRVGRTARAGR+GRSIAFVTQYDVEVYQR+EA++G++LP Y C+ED VLV+ ERV+EAQR+A REMREA
Sbjct:  103 VEVSSKFSTPVSLVQQYLFIPAKYKDCYLAYVLNEFAGQTALVFVSTCNAAQRVALLLRNLGFQAICLHGQMSQPKRLGALNKFKSGARPILVATDVASRGLDIPSVDLVLNFDIPSHGKDYIHRVGRTARAGRSGRSIAFVTQYDVEVYQRLEAMLGKQLPAYPCEEDMVLVMLERVSEAQRLANREMREA 294
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: W7TSS5_9STRA (Dead deah box rna n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSS5_9STRA)

HSP 1 Score: 316 bits (810), Expect = 5.090e-103
Identity = 163/215 (75.81%), Postives = 187/215 (86.98%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFN--KRGKGRRGNADGEREDTE 639
            VE + KF TP+TLVQQYLFIPAK+KDCYLAY LNE AGQ+ +VFV+TCNNAQR+ALLLRNLGF A+CLHGQM QPKRLGAL KFKSGQR++LIATDVASRGLDIP+VDLV+N +IPSHGKDYIHRVGRTARAGRAGRSIA VTQYDVEVYQR+EAL+G KLP Y  DE+TVL+L ERV+EAQR+AARE+RE      K+G GR+   DGE ++ E
Sbjct:  238 VEASDKFTTPRTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAMVTQYDVEVYQRLEALLGTKLPEYKTDEETVLILLERVSEAQRIAARELRELTLGGGKKG-GRKRGRDGEGDEDE 451
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A7S3GTT3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTT3_9STRA)

HSP 1 Score: 308 bits (789), Expect = 2.260e-102
Identity = 153/209 (73.21%), Postives = 180/209 (86.12%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFN--KRGKGRRGNADG 621
            VE+++KF TPK LVQQYLFIPAK+KDCYLAY+L+EF GQS I+FV+TCNNA RV LLLRNLGF+AVCLHGQ+ Q KRLGAL KFK+GQRN+L+ATDVASRGLDIP+VD+V+N +IPSHGKDYIHRVGRTARAG++GRS++FVTQYDVE YQR+EALIGQKLP +  DE TVL+L ERV EAQR+A RE+RE   N  +  K  RG A G
Sbjct:   54 VEVSNKFQTPKQLVQQYLFIPAKYKDCYLAYLLDEFKGQSVIIFVATCNNALRVTLLLRNLGFEAVCLHGQLSQAKRLGALNKFKAGQRNILVATDVASRGLDIPNVDMVLNFDIPSHGKDYIHRVGRTARAGKSGRSVSFVTQYDVEAYQRLEALIGQKLPEFPADESTVLILLERVNEAQRLAVRELREMQANDPRNKKRNRGGAPG 262
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A7S0SXP7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXP7_9STRA)

HSP 1 Score: 308 bits (789), Expect = 3.000e-100
Identity = 154/200 (77.00%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFNKRGKG 600
            VE+++KF TPKTL QQYLFIPAK KDCYL+Y+L+EF GQSTIVFV+TCNNA RVALLLRNLGF AVCLHGQM Q KRLGAL KFKSGQRN+L+ATDVASRGLDIP+VDLV N +IPSHGKDYIHRVGRTARAG+AGRSIAFVTQYD+E YQR+E +I QKLP +  DE+TVL+L ERV EAQR+A +EMRE   N   KG
Sbjct:  221 VEVSNKFQTPKTLSQQYLFIPAKWKDCYLSYILDEFKGQSTIVFVATCNNALRVALLLRNLGFNAVCLHGQMNQAKRLGALNKFKSGQRNILVATDVASRGLDIPNVDLVCNYDIPSHGKDYIHRVGRTARAGKAGRSIAFVTQYDIEAYQRLETMIQQKLPEFKTDEETVLILLERVNEAQRLATKEMREMQENDPRKG 420
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: K3WTS8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTS8_GLOUD)

HSP 1 Score: 305 bits (782), Expect = 7.970e-99
Identity = 151/207 (72.95%), Postives = 176/207 (85.02%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFN-KRGKGRRGNAD 618
            VEITHKFATP+TL Q YLFIPAK KDCYLAYVLNE AGQS ++F STCN  Q+V L+LRNLGFQA+CLHGQM QP RLGAL KFK+  RN+L+ TDVASRGLDIPSVD+V+N +IP+HGKDYIHRVGRTARAGRAG +++FVTQYDVE+YQR+E L+G+KL  Y C+EDTVLV+ ERV EAQRMA  EM+E+D   KRG+  RG AD
Sbjct:  230 VEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMTQPNRLGALNKFKAKSRNILVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGTAVSFVTQYDVELYQRIEHLLGKKLDTYPCEEDTVLVMSERVNEAQRMATIEMKESDTGGKRGRYTRGGAD 436
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A812RT96_SYMMI (DDX47 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RT96_SYMMI)

HSP 1 Score: 304 bits (779), Expect = 1.690e-98
Identity = 154/211 (72.99%), Postives = 179/211 (84.83%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFNKRGK----GRRGNADG 621
            VE+++KF TPKTLVQQYLFIPAK KDCYLAYVL+EF GQSTI+FV+TC+NA RV ++LR LGF A+CLHGQ+ QPKRLGAL KFKSG RN+L+ATDVASRGLDIP+VD V+N +IPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVE YQR+E LIGQ+LP +  DE TVLVL ERV EAQR+A++++RE +    GK    GR  N DG
Sbjct:  237 VEVSNKFQTPKTLVQQYLFIPAKWKDCYLAYVLDEFKGQSTIIFVATCSNALRVTMVLRALGFGAICLHGQLSQPKRLGALNKFKSGLRNILVATDVASRGLDIPNVDFVLNFDIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEAYQRLETLIGQRLPEFPADEQTVLVLLERVTEAQRIASKDIREMESTAGGKKKKRGRGENDDG 447
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: A0A662XZC0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZC0_9STRA)

HSP 1 Score: 304 bits (778), Expect = 6.320e-98
Identity = 154/216 (71.30%), Postives = 177/216 (81.94%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFN-----KRGKGRRGNADGERED 633
            VEITHKFATP+TL Q YLFIPAK KDCYLAYVLNE AGQS ++F STCN  Q+V L+LRNLGFQA+CLHGQM QP RLGAL KFK+  RNVL+ TDVASRGLDIPSVD+V+N +IP+HGKDYIHRVGRTARAGRAG +++FVTQYDVE+YQR+E L+G KL  Y C+EDTVLV+ ERV EAQRMA  EM+EA  N     KRG+  RG  D +R D
Sbjct:  247 VEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPNRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAVSFVTQYDVELYQRIEHLLGAKLDSYPCEEDTVLVMSERVGEAQRMATIEMKEAAANGTGSFKRGRYSRGEGDEDRAD 462
[Close]
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Match: H3GTT0_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GTT0_PHYRM)

HSP 1 Score: 302 bits (773), Expect = 2.700e-97
Identity = 157/232 (67.67%), Postives = 183/232 (78.88%), Query Frame = 1 
Query:    1 VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFN----KRGKGRRGNADGEREDTEAVVRSFKRQRMGGGG 684
            VEITHKFATP+TL Q YLFIPAK KDCYLAYVLNE AGQS ++F STCN  Q+V L+LRNLGFQA+CLHGQM QP RLGAL KFK+  RNVL+ TDVASRGLDIPSVD+V+N +IP+HGKDYIHRVGRTARAGRAG +I+FVTQYDVE+YQR+E L+G KL  Y+C+E+TVLV+ ERV EAQR+A  EM+EA  N    KRG+  R     E E+ E   +S  R   GG G
Sbjct:  231 VEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMTQPNRLGALNKFKAKARNVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDAYSCEEETVLVMSERVNEAQRIATIEMKEAAANGTGTKRGRYSRDEEGDEEEEGEKRYKSAARVHNGGRG 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4086.10544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP9_ECTSI2.080e-13490.08DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2W3B8_9STRA2.130e-10876.28Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2Y335_9STRA1.000e-10681.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TSS5_9STRA5.090e-10375.81Dead deah box rna n=3 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3GTT3_9STRA2.260e-10273.21Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SXP7_9STRA3.000e-10077.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
K3WTS8_GLOUD7.970e-9972.95Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A812RT96_SYMMI1.690e-9872.99DDX47 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A662XZC0_9STRA6.320e-9871.30Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
H3GTT0_PHYRM2.700e-9767.67Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4086contigH-paniculata_contig4086:10575..16435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.3
Seed ortholog evalue7.8e-113
Seed eggNOG ortholog2880.D7FYP9
Preferred nameDDX47
KEGG koko:K10352,ko:K14777
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0012501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0023052,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0330@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko04147,ko04812
Exons5
Model size729
Cds size729
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4086.10544.1prot_H-paniculata_contig4086.10544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4086 10575..16435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930249.0264578-CDS-H-paniculata_contig4086:10574..107161622930249.0264578-CDS-H-paniculata_contig4086:10574..10716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 10575..10716 -
1691481209.5602374-CDS-H-paniculata_contig4086:10574..107161691481209.5602374-CDS-H-paniculata_contig4086:10574..10716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 10575..10716 -
1622930249.0439644-CDS-H-paniculata_contig4086:13483..136381622930249.0439644-CDS-H-paniculata_contig4086:13483..13638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 13484..13638 -
1691481209.5698843-CDS-H-paniculata_contig4086:13483..136381691481209.5698843-CDS-H-paniculata_contig4086:13483..13638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 13484..13638 -
1622930249.063427-CDS-H-paniculata_contig4086:14567..146811622930249.063427-CDS-H-paniculata_contig4086:14567..14681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 14568..14681 -
1691481209.5771422-CDS-H-paniculata_contig4086:14567..146811691481209.5771422-CDS-H-paniculata_contig4086:14567..14681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 14568..14681 -
1622930249.0853076-CDS-H-paniculata_contig4086:15691..158531622930249.0853076-CDS-H-paniculata_contig4086:15691..15853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 15692..15853 -
1691481209.5902302-CDS-H-paniculata_contig4086:15691..158531691481209.5902302-CDS-H-paniculata_contig4086:15691..15853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 15692..15853 -
1622930249.1066794-CDS-H-paniculata_contig4086:16279..164351622930249.1066794-CDS-H-paniculata_contig4086:16279..16435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 16280..16435 -
1691481209.6008024-CDS-H-paniculata_contig4086:16279..164351691481209.6008024-CDS-H-paniculata_contig4086:16279..16435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4086 16280..16435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4086.10544.1

>prot_H-paniculata_contig4086.10544.1 ID=prot_H-paniculata_contig4086.10544.1|Name=mRNA_H-paniculata_contig4086.10544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
VEITHKFATPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFVSTCNN
AQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASR
GLDIPSVDLVVNLEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVY
QRMEALIGQKLPPYTCDEDTVLVLQERVAEAQRMAAREMREADFNKRGKG
RRGNADGEREDTEAVVRSFKRQRMGGGGGRGGGTKGGRGRRR*
back to top

mRNA from alignment at H-paniculata_contig4086:10575..16435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4086.10544.1 ID=mRNA_H-paniculata_contig4086.10544.1|Name=mRNA_H-paniculata_contig4086.10544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5861bp|location=Sequence derived from alignment at H-paniculata_contig4086:10575..16435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGATCACACACAAATTCGCGACTCCTAAGACCCTTGTGCAGCAGTA
CCTCTTCATCCCAGCCAAACACAAAGACTGCTACCTGGCTTACGTTCTAA
ACGAGTTCGCCGGACAAAGCACGATCGTTTTCGTGTCAACATGCAACAAT
GCTCAGGTGGGATTCGCGCTCGCGTCGCGGAAATATGTCAGGGTTTGTTT
TGTCTTGATCAGGAGTTCGGATCACATATGTCGTGGGTCGTTTTCAAATT
TTGTTTTCTTTGCGTGGCACGGGGTTTTTAGATTTCTCCTCAGTTTCGAT
AGAGTGTTTTGGCGAAAAACCATATACTGAAGGAATCCTGCTGCTTCGAC
AGCGTTGTTAAGGCGCTGATCGCGCCTCAATATCAATAAGAAGACATTTG
ACTAGACGTGAGTGTGGACATTGGCAGCTTTGAGTGCAGGCCGTGTGTAC
TTCAAAAATGAACTCTTGCGGTATTTTTACGTACCCTTCGGCTGAGGAAT
ACCTTGGATTTATGTGTGCTAGAGAAGCAATCCCCTTCTACCGCCGTCTT
CTGTTGCCCCCTGTGTCACCGCCGTTCCGCAGCGCGTGGCCCTCCTGCTG
CGGAACCTTGGGTTCCAAGCGGTTTGCCTGCATGGGCAGATGGGTCAGCC
CAAGAGGCTGGGGGCGCTGGGAAAGTTCAAATCTGGACAACGCAACGTTC
TCATCGCCACGGACGTGGCTAGCCGCGGGCTGGACATCCCCTCGGTGAGA
TAGATGCTTTGGCCTGCTGTGTCCCGCAACAGCGACCACTGGGTAGTTGC
GCGCACAGTAGAATCCCGTAAGTTGTACAGCGAGGTCGCCATTATCATTT
GGCAACACCTTGGTAACTCTGTACTAGAGTGCATTCTGGAAGACGGATCA
TGGTGCGAGTATAGCCAATCACTACGCTACTGACCCAGAAGTGTTGCTCG
CTGCTCGAGCCCCGCTGCGAGTGCAGCCAGCTGGTGTGCGTGTGTCGAGA
ACAATAAGTTGTGACTAGTAGCAGTAGTACGGGATACAACTTGTTGAACA
TCACCTAGATGGTGGACAGTTCGCCGAGCTCGTTTATTGTGCGTGTTTGT
ATTTTCAAACCACCACCTAGAGAGTGTCGTTCGCGTTACAGAGGGAAGGG
TTGTCATGTACATTCCAATGGCGTAACATGAATAGGAGAACGGCGAATCT
TACCCTAGTGGAATTCTGTTGTGTTTTGATTCACACAACGAACAATCTTG
CCCTCTGTGGGTCGGAAATGTGCCGTTATGCGGTTTGTGCGGTTAGCGAA
GTAAGCACCAAAGTACATGAGCTGTAGTTGAGTGATTTCAAGTATACGCT
GCGGGATAATGACATCGTACATCGTGATACACTGATGGCGCCCAAAGCGA
GAACCCGAAGCAACAGATTTTGCTGATCGCTCATGGCAGAAATGTCACTG
TGTTTCCCCTAAACCATAAACACTGCGCTCAATTTAGCTAGTTGTGGAAG
AACTGAATGACGATATGTACGTCGTTTTCGCGAAACATACGAGCATGGTA
GTTCAAGGAAATTAAATTCTACCCCGTTTGGTACAACATCTGATAAATCA
AAATGACGTATCATCTAATTATCCATTGATCAAGTTAACTCCCACCCATG
GTCATTGTGTAGTATAAGTCAAAGTCGATTCAGTTTCCTCTTTTGTGTCT
ACCGCCTGCTTTTGTTCAACCACCTGTGTATATTCGATGGGCATGGTATT
GCAGGTTGATCTGGTGGTGAACTTGGAGATCCCTAGTCACGGAAAAGACT
ACATCCACCGTGTGGGACGGACTGCGAGAGCTGGCCGGGCTGGACGTTCG
ATTGCCTTCGTCACACAGGTCAATGCATGAAGTGTAAAACATAAAGTGTG
TCTAGAGCTCGAAACTTCAACTGTATGTTTTTCTAGGACTGTTATCGTCA
ACGATTTTGTTTGAACATGTATAGAATGAAATTAACGGGAGATGCAATCT
ATCTTTTGGGTACCGTGCTGTAATCGGTGTGTAGTTGTTAGGTGCCGCGG
TGCCGCACCGACACTGTGTTTTTGTGTGTACTTGTCCGGTAAATGTTAAA
TGTTGCTTGATATTTTTTCCTTACCACGTTAGATTGAGTCGATCAAAAGT
TGGTCAGACTCCATGGGTCAGAGAGCACAGTCCGCCGCATGTTATGCTAG
ATACGGGTATGGTACTGCGCTTCCTCGTTGTCGCGCAGTGCGTCAGCTAG
CCCATCGTCCCCGCACTGTAATTGAGCTTTCGCTGATAGGTGTGCAGCTT
CGGACTACAGGGTGCACTCGGCACGAAAGGTGCAGTATAAGAACATGATG
GCGACAGTAACATAGAACATTAACAGAGTCAAAAGAGGTGTTGAGGGAGG
CTCTGTCGCACTCTCAAGTTTTTCAGCTCGATACTTTCCAGACTATCACG
GGTAGGGCCACACACAGTCGTTTCAGTGACACGGTTAGACTCCATCCTAT
CGCAAGAGCACTCTCCCTTTATTTCATGTCCAAGATGTCTATTGGTGGGT
ATATAGAGGTACGTGGGTATTATGTGGGGCGACTCATGAAGCATTTCGTA
ATAAGCACCAGCAAATGGAACACTGGCATCAGCAAAAATCACGAAATTCA
GATATCCTTCTCCCCCCCTCCCCCACCCCCCCACTCCGCCACTCCGCCCG
TGCGTTACTCGGCCACTCTCCCGTCCCTGCTGGCTCTGGTCCGGTTCTTG
TACGCGTACTATGGGCCGTTACAACATGAACGCACCAAATATGACAGTAC
GATGTGGAGGTTTACCAGAGAATGGAGGCGTTGATCGGACAGAAGTTGCC
GCCCTACACTTGTGATGAAGATACCGTGTTGGTGTTGCAGGAGAGGGTGG
CGGAAGCACAAAGGATGGCAGCCAGGGAGATGCGCGAGGCTGACTTCAAC
AAGTACGTTGTGTTGGGCCAATTTTTCTGTCATTTTTTGCGTCATTACTA
GGTTGGTTCGTCGAAATTCATTAAAAATGGATGCGTCTTGGCGGCCACCA
AAACTGAGGATATGCTGAGCCCTTAGGTTTGTTGTGTTTGAAGATCTGGC
GAAAATATTTACTCGAGAATTTCATCCACTACTAAATGTCTAGGCTCAAT
TTACACAATCGATCGCTTACGTTAGAGTAACTCCGGAAAATATACAGCTC
CGGCCAAAAGAGAAGGTCTCAGGAGTTGGCTTAGACCACTTTTCGTCATG
GCGTTTTTTTCTGACAATTTTCTTTGTCGACGTGGACTTCGGCAGCGCCG
AGCTCGCCAGGTTTTGGACCAAATGGATTGAAGTTGGTGGGAAATAGTTT
GCTTGTGTATGTAGATAACATCTTGTTTGTCGACTTGTTGCAGCTCACAA
GCGGCAAGCTTGCTATTTTCGCTACGTTAGCCTACTTTTGAGCCCACTCT
GAAGGGCAAAATACAGTCAAGAACCATTCGCATTCCTCTTTTCGAGAGTT
TTGACCTGACTTTTGAGGAGATAAGGGCACCGTGAATATTTTGGTTGTGC
CTTGTGGCGCGCCTTTTTTTCCCGATTTTGTGGGCATTTTACTGATTTTG
CAAATCCGTCCATATCTCCCCAAAAAAGAAAAAAACAAAGGACTCAACGA
GGTGCAGCCTAGATATTCACGGTGTCCTCATCTCAGAATTTCAAGTCAAA
TTCCCGAAAATGGAACGTGAACGGCCTTTTTTTCTCTTATTTGGGCATTT
CGGTCTAAACAGGGTATAACAGCTGGAAAATCAGTAAAATGTCTGCATAA
TCTGTAGAAAATAAATAAATAATATCGCTATGCGTGAAAGCCTAACTATT
CACAATGCGCTCATCTCAAAATTTCACGTCCGCTGAATATGCACGTAAAT
CGATATATCGGCACGGTGCGGAAAATTCAAAGGTAATTACATTGGCGGGT
CTTCGTCACTCCATTTTTGAGATATTGTACCTTCCTTTTTTTTTATTGGG
GTGGAAAGGAGGAAACCCGCGCTCAACACTTACCTTGAACCATTGGGTTT
GTTTGTCGGTTACCTGATAGCCCGACTAGTCCGTTAAGACACGTGAGATA
GACAACCCGAGCGTTCGCAAAGCTTTGCTTAGGGTAAGGTGGGGGTTGCA
CCCACTAAAACCCCCCATTATCGCTGAATCCCCAACTCTAGGCAGTACAT
GCCCAGCCCTGCTCAATCGAGCTTTGACCCTCGATGGGTTAATGGACAAG
AGATCGACAGCGCAGAAGCGCTAACCTTCTCGAGTCATGGAATGTGGGTT
CACAGGCATCCCTCCATATAATTCAGCCAGCACCACGAAAGCTCTGATCA
CTTGAAGCCACGTCGGTCTTTCTGCCCCTCCATCGCGGAGAAGGTATCCC
CCAAAGCGTCCTGATTCCTGCCCCATGATAAGTGAAATATTGGAGAAGGA
CGCGTACGCCCGACGATTATCCACGCTATTACGCTATCGTTGCGTTTCGA
CCTGGTGTATTCGCCCGCAGGAGGAGTGCAGTCTGGGCCTCTTCCCGATA
AACCCCGTTGCGGAAAAGTTAGCTTGCTACCCTTGCTCTCGCTTAGTTAC
GAATACTACAAATCATCAATCCTCGCGTAAGCCCGTACACCACGTCATGG
TGGAGAGCGGCTGGTACGGGATCTGAAATTTTAAGATGAGGGCAGCGTGA
ATATCTAGGCTTTACCTCGTGGCGCTCATTTTTTTTCTTCGGGAGATATG
GACGGGTCGTTAAACCGGAAAATCAGTAAAATGCCCACAAAATCGGAGAC
AAAACAAGGACGCGCCACGCGTTAAAATCTAGACGATCACGGTGCCTTCA
TCTCAAAATTTCAGGTCGAAGCTCCCATAAATGGAATGCGAATGGCCCGT
TGACAACGACCCGTTGATTATGTATGTGCACAGTAGTACATGGCGACACA
CACGATATGTTGACTTCGTCATGGCAATCACCGCGCAATATGTTCAATTG
ACGAAGTACTGAATAGAATGCGCACCACTCATTACCGATAACCCCCTGGA
ATACAAAGCTCGCGGTCCGCAGATCCGTGAGTACGGATTGTTATCTTTTT
TGTGGATACTTTCTGCAGTGTATGTATGCACATTGACACACGCGGGGCAA
CCAACGTTTTCTTTATTCTCGTTTTCGGGGATGTAACGTCCTATTTTGGG
CAAGAATATAGCACGAAGTGCTGAAGGTGCCTGGATGGCTGATCAGGGCG
TGCGATGCACTCCGCGGTGATTGTACGGTTGCAGAGAACCCCACATGTTA
GTGGTTTGGTGCATTGGTTCTTGCTACATCGCCCGTTGACTGTATTTTGC
CCTTCACAGTGGGCTCGGCCTGTAGCTCACACAAGCATGGTTCCTGTTTA
GTGGGCACCTCCACCTCGGTCTTGTTTGACTTGAATAATGAGACATACTG
GTGGAGGGCGGCAATAATCGTTTGTTCAACCAATAGTCTAACTCAACCCT
GCAGAATCGGCGTTTGCCTCTTCTCTATAGCCTCAGCCTGGGGCGAAGCC
AAATACAGCGGAGGTACTGACCTCGCGTTCACATACTACCGTACGTTTAT
CCCTAGCATAGGCAAATATGCAGGACCTAATTGTGCCTTTGCCAGCCTGA
AACAAGCCTCAATTTTCCCGTCGCCGTTGACCGTTCATTCTGACCTTCAA
CAAAAACCTACCTTTGCAGGAGGGGAAAGGGAAGACGTGGCAATGCCGAT
GGCGAGCGAGAGGACACGGAGGCGGTAGTTCGGAGTTTCAAGCGACAGAG
AATGGGCGGGGGTGGGGGGAGAGGGGGCGGGACCAAGGGAGGACGGGGGC
GACGTAGATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4086:10575..16435-

>mRNA_H-paniculata_contig4086.10544.1 ID=mRNA_H-paniculata_contig4086.10544.1|Name=mRNA_H-paniculata_contig4086.10544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at H-paniculata_contig4086:10575..16435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGATCACACACAAATTCGCGACTCCTAAGACCCTTGTGCAGCAGTA
CCTCTTCATCCCAGCCAAACACAAAGACTGCTACCTGGCTTACGTTCTAA
ACGAGTTCGCCGGACAAAGCACGATCGTTTTCGTGTCAACATGCAACAAT
GCTCAGGTGGAGATCACACACAAATTCGCGACTCCTAAGACCCTTGTGCA
GCAGTACCTCTTCATCCCAGCCAAACACAAAGACTGCTACCTGGCTTACG
TTCTAAACGAGTTCGCCGGACAAAGCACGATCGTTTTCGTGTCAACATGC
AACAATGCTCAGCGCGTGGCCCTCCTGCTGCGGAACCTTGGGTTCCAAGC
GGTTTGCCTGCATGGGCAGATGGGTCAGCCCAAGAGGCTGGGGGCGCTGG
GAAAGTTCAAATCTGGACAACGCAACGTTCTCATCGCCACGGACGTGGCT
AGCCGCGGGCTGGACATCCCCTCGCGCGTGGCCCTCCTGCTGCGGAACCT
TGGGTTCCAAGCGGTTTGCCTGCATGGGCAGATGGGTCAGCCCAAGAGGC
TGGGGGCGCTGGGAAAGTTCAAATCTGGACAACGCAACGTTCTCATCGCC
ACGGACGTGGCTAGCCGCGGGCTGGACATCCCCTCGGTTGATCTGGTGGT
GAACTTGGAGATCCCTAGTCACGGAAAAGACTACATCCACCGTGTGGGAC
GGACTGCGAGAGCTGGCCGGGCTGGACGTTCGATTGCCTTCGTCACACAG
GTTGATCTGGTGGTGAACTTGGAGATCCCTAGTCACGGAAAAGACTACAT
CCACCGTGTGGGACGGACTGCGAGAGCTGGCCGGGCTGGACGTTCGATTG
CCTTCGTCACACAGTACGATGTGGAGGTTTACCAGAGAATGGAGGCGTTG
ATCGGACAGAAGTTGCCGCCCTACACTTGTGATGAAGATACCGTGTTGGT
GTTGCAGGAGAGGGTGGCGGAAGCACAAAGGATGGCAGCCAGGGAGATGC
GCGAGGCTGACTTCAACAATACGATGTGGAGGTTTACCAGAGAATGGAGG
CGTTGATCGGACAGAAGTTGCCGCCCTACACTTGTGATGAAGATACCGTG
TTGGTGTTGCAGGAGAGGGTGGCGGAAGCACAAAGGATGGCAGCCAGGGA
GATGCGCGAGGCTGACTTCAACAAGAGGGGAAAGGGAAGACGTGGCAATG
CCGATGGCGAGCGAGAGGACACGGAGGCGGTAGTTCGGAGTTTCAAGCGA
CAGAGAATGGGCGGGGGTGGGGGGAGAGGGGGCGGGACCAAGGGAGGACG
GGGGCGACGTAGATGAGAGGGGAAAGGGAAGACGTGGCAATGCCGATGGC
GAGCGAGAGGACACGGAGGCGGTAGTTCGGAGTTTCAAGCGACAGAGAAT
GGGCGGGGGTGGGGGGAGAGGGGGCGGGACCAAGGGAGGACGGGGGCGAC
GTAGATGA
back to top