mRNA_H-paniculata_contig4081.10536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4081.10536.1
Unique NamemRNA_H-paniculata_contig4081.10536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: D7FYS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS3_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.970e-95
Identity = 149/216 (68.98%), Postives = 171/216 (79.17%), Query Frame = 2 
Query:  290 TTGAKITVNEVKLKGRGDLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLVEQASHKGFGLFSVFRERQEDQ 937
            TT +   V EV+L GR       +WGVGIGGGLWSTG+LL EHL  HAALYD   + +RVLELGSGTGLVGLAAARFGPP EVVITDLESH+D+C+ NV       A  Q  C V RVE YDWS EVP +LG VPFD+IL TDVAYYEHLY PF++AL+RTAG +TL+LLGVTRTDTGPAFFDALDKAGF YNLV+QASHKGFGLF+V RE+ +++
Sbjct:    8 TTTSTSEVKEVELDGRXXXXXEVNWGVGIGGGLWSTGILLTEHLAKHAALYDRVFKGKRVLELGSGTGLVGLAAARFGPPLEVVITDLESHVDICKRNVASQDDMGA--QGLCSV-RVEAYDWSSEVPEELGEVPFDVILATDVAYYEHLYAPFVQALERTAGQHTLVLLGVTRTDTGPAFFDALDKAGFVYNLVDQASHKGFGLFTVQREQPDER 220
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A835Z9W6_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.750e-47
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 2 
Query:  344 LSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWS-GEVPAQL-------GVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFE-YNLVEQASHKGFGLFSVFR 919
            LS+ CDWGVGIGG LWS  +L+I ++     L+   L   RVLELG+GTG++ LA+A    PR ++ITD  SH+D+C+ NVDRN+ +          I    + W  G VPA +       G   FD++LG D+AY+ HLY P I AL    GP T++ LGVT+ DT P FF  LD+AGF  Y++   A    F +F++FR
Sbjct:   27 LSIKCDWGVGIGGHLWSCAMLMIRYMQQERELFSRILDGARVLELGAGTGMLSLASAALYDPRSIIITDQLSHIDICQHNVDRNSHNMFNKS---LEIEARAFSWGDGNVPALISSDSAERGAASFDVVLGADLAYFSHLYQPLIAALVDVVGPKTVVFLGVTKADTDPTFFRLLDEAGFRFYDMSSGADTANFTIFTIFR 224
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A7R9UE36_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE36_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.290e-44
Identity = 92/201 (45.77%), Postives = 124/201 (61.69%), Query Frame = 2 
Query:  344 LSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLVEQASHKG------FGLFSVFRERQ 928
            L L  DW VGIGGG+WS+   L+ H       Y + L  RRVLELG+GTGL G  AA   P  E+V++D+  H+ + R NV++N   T T Q   KV RVE +DW+ E    L   PFD+++GTDVAY+E LY+    A+DRT  P+ +++LGVTR+DTGP+FF  L K GF Y+ +      G      FGLF+V+RE +
Sbjct:   23 LQLELDWSVGIGGGVWSSAEQLVAHFEAQQETYRQTLHGRRVLELGAGTGLAGFGAALVSPLSELVLSDVGEHVTLLRRNVEQNF-DTLT-QSGVKV-RVETFDWTVEDVGHLDG-PFDVLIGTDVAYHESLYEDVANAIDRTLKPDGVVILGVTRSDTGPSFFRELVKRGFNYHRIRDEDMGGKHTNSSFGLFTVWREAE 219
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: W7U3Q4_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q4_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.060e-42
Identity = 88/210 (41.90%), Postives = 125/210 (59.52%), Query Frame = 2 
Query:  341 DLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFG--PPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQ--------LGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLVEQASHK-------GFGLFSVFR 919
            +L+L   W VGIGGG+W+TGLLL E+   +A  + + L  +R++E+GSGTGLV L+ A      P+E+V+TD + HLD+   N+  N A           IRV++++W  +   +        L  +PFD+++GTDVAY + LY P + AL R +GP++LILLGVTRTDT P FF  L + GF+Y L   A  +       GF L SV R
Sbjct:   55 ELTLETQWNVGIGGGIWTTGLLLCEYFGRNATFFSKVLYGKRIIEIGSGTGLVALSLATNALFKPQEIVVTDQKDHLDLIERNICANIAKMKAP------IRVQEFNWLKDKETKNTDSKVKALCALPFDVVVGTDVAYCQELYGPVVHALCRLSGPHSLILLGVTRTDTNPRFFQLLQEEGFDYCLTPVADGESSCTVAGGFALLSVVR 258
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A7S1U640_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U640_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.520e-39
Identity = 84/204 (41.18%), Postives = 121/204 (59.31%), Query Frame = 2 
Query:  341 DLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARF-GPPREVVITDLESHLDMCRSNVDRNA----ASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLVEQASHKG------FGLFSVFR 919
            ++ L  +W VGIGGG+WS     + H+  H   Y++  R RRV+ELG+GTGL G AAA   G   EVV+TD+  H++M R N+  NA    AS A+       +RVE++DW+     +     FD+++GTDVAY+E LYD    A+D T   + +++LGVTR DTGP+FF A +  GF Y+ V+++   G      F LF  +R
Sbjct:   37 EIQLTTNWDVGIGGGVWSAAEQFLGHVGAHRDFYEQKWRGRRVIELGAGTGLAGFAAALVAGAGAEVVLTDIGEHVEMLRENLKLNAQLMEASGAS-------VRVEEFDWAKADEVEHLGGKFDVVVGTDVAYHEDLYDDVAAAIDATTKDDGVVVLGVTRLDTGPSFFRAFEARGFTYHRVDESLMGGAHTKSSFALFLAWR 233
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A1V9ZGF1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGF1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.910e-38
Identity = 89/198 (44.95%), Postives = 109/198 (55.05%), Query Frame = 2 
Query:  344 LSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEY-----NLVEQASH-KGFGLFSVFR 919
            + L CDWGVGIGG LW++G L++++   H     + L   RVLELGSGTGLVGLA A  GP   V +TDL SH+    +NV RNA            I V   DW+   P      P D I+GTD+AY    Y P +  L R AGPNT IL+G+ R DT   FF  L  AGF Y     +L+ Q  H K FGLF + R
Sbjct:   22 VELGCDWGVGIGGSLWTSGRLMVDYFSRHEPARRQ-LAGARVLELGSGTGLVGLAVALMGPAH-VALTDLASHVAALEANVARNADRIPAET----TITVSALDWNAPPPTP--DAPLDWIVGTDIAYSPAFYAPLLATLQRLAGPNTRILVGLGRHDTDRRFFQLLHDAGFSYYKVDESLMSQEFHGKDFGLFEIRR 211
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A067CH82_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CH82_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 2.300e-37
Identity = 85/198 (42.93%), Postives = 114/198 (57.58%), Query Frame = 2 
Query:  344 LSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLV------EQASHKGFGLFSVFR 919
            + L C+WGVGIGG LW++G L++++   +     + L+   VLELGSGTGLVGLA A  GP   VV+TDLESH+   ++NV+RN+A  +       ++ V   DW+    A     P D I+GTD+AY    Y P ++ L   AGPNT IL+G+ R DT   FF  L  AGF Y  V      E+   K FGLF + R
Sbjct:   22 VELGCNWGVGIGGSLWTSGRLMVDYFSRNVRARQQ-LQGASVLELGSGTGLVGLALACMGPA-SVVLTDLESHVAALQANVERNSARFSDGT----LVSVAALDWN-TASADDATAPLDWIVGTDIAYMPEFYAPLLKTLQLLAGPNTRILVGLGRHDTDMRFFRLLQDAGFSYYKVSDELVSEEFRGKDFGLFEIQR 212
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BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A2D4BZQ6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ6_PYTIN)

HSP 1 Score: 146 bits (368), Expect = 3.910e-37
Identity = 83/206 (40.29%), Postives = 112/206 (54.37%), Query Frame = 2 
Query:  341 DLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVP-----AQLGVVP--FDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEY------NLVEQASHKGFGLFSVFR 919
            +L+  CDW VGIGG +W++G +L  HL  H   Y E  + + V+ELGSGTG VGL AA    P +VV+TDL SHLD  + N+D N  +          +R  +  W  +       A LGV     DI+LGTD+AY    Y+P +  L R     TL+L+G+ R+DTG  FF  L++ GFEY       L  +   K FGLF + R
Sbjct:   33 ELAFQCDWDVGIGGSVWTSGEILTAHLEMHQEQYREIFQGKSVVELGSGTGYVGLLAAACFQPAQVVLTDLASHLDCMQRNIDGNRTAVQPGVH----VRAAELCWGCDAHEDALLASLGVTGRGVDIVLGTDIAYLTEFYEPILHTLRRITHSETLVLIGLNRSDTGMQFFRRLEQEGFEYYKLSDRQLPREHRGKDFGLFQIRR 234
[Close]
BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A8K1C330_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C330_PYTOL)

HSP 1 Score: 144 bits (362), Expect = 3.520e-36
Identity = 85/208 (40.87%), Postives = 112/208 (53.85%), Query Frame = 2 
Query:  341 DLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWS-----------GEVPAQLGVVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYN------LVEQASHKGFGLFSV 913
            DL   CDW +GIGG +W++G +L  HL +    Y    +D+ V+ELGSGTG VGL  A    P +V++TDL+SH++  + N+ RNA            +RV+  + S           G   A  GV   DIILGTDVAY   LY+P +  L R A   TLILLG+ R DTG  FF  L++ GFEY       L  +   K FGLF +
Sbjct:   39 DLQFQCDWDIGIGGSVWTSGEILTAHLASQQEHYRSIFQDKVVVELGSGTGFVGLMTAVCFQPSDVIVTDLQSHVECLQHNITRNAHHFRDR------VRVDARELSWGSSEHEDALVGSFGAGRGV---DIILGTDVAYLRELYEPLLHTLRRLAHSKTLILLGLNRADTGMTFFRRLEEEGFEYYKIADRLLPSEYRGKDFGLFEI 237
[Close]
BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Match: A0A5D6YE76_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE76_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.170e-36
Identity = 96/244 (39.34%), Postives = 124/244 (50.82%), Query Frame = 2 
Query:  236 MSSQEASREDSNVHYHTGTTGAKITVNEVKLKGRGDLSLACDWGVGIGGGLWSTGLLLIEHLCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLDMCRSNVDRNAASTATNQDCCKVIRVEKYDWSGE-----VPAQLG-----VVPFDIILGTDVAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYNLV-EQASH-----KGFGLFSVFR 919
            M   EA+RE S        T   + V+         L  ACDW VGIGG +W++G +L  HL  HA  Y      + VLELGSGTG VGL  A    P  V++TDL +H+     NV  NAA    +      +RV +  W        + A LG     V   D+I+GTDVAY   LY+P + +L R AG  TL+LLG+ R DT  AFF  L++ GFEY  V ++  H     K FGLF + R
Sbjct:    1 MEEVEATRESST------PTIISLVVHAPDAPAPQTLRFACDWDVGIGGSVWTSGQVLAGHLQQHADKYRPLFAGKCVLELGSGTGFVGLMTAVCFAPARVLLTDLATHVASLERNVALNAALLPPSTR----VRVAELSWGSAEQEDALLASLGDGADTVDTVDVIIGTDVAYLHELYEPLLHSLRRLAGEQTLVLLGLNRADTDTAFFTRLEQDGFEYYKVPDEQLHRDYHGKDFGLFEIRR 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4081.10536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS3_ECTSI1.970e-9568.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9W6_9STRA5.750e-4743.78Putative methyltransferase-domain-containing prote... [more]
A0A7R9UE36_9STRA1.290e-4445.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U3Q4_9STRA1.060e-4241.90Nicotinamide N-methyltransferase, putative n=1 Tax... [more]
A0A7S1U640_9STRA5.520e-3941.18Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZGF1_9STRA5.910e-3844.95Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CH82_SAPPC2.300e-3742.93Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BZQ6_PYTIN3.910e-3740.29Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1C330_PYTOL3.520e-3640.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YE76_9STRA5.170e-3639.34Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4081contigH-paniculata_contig4081:2253..7516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue1.1e-78
Seed eggNOG ortholog2880.D7FYS3
Preferred nameEFM6
KEGG koko:K21804,ko:K21805
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionNicotinamide N-methyltransferase-like
Ec32 orthologEc-19_002320.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons6
Model size1454
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4081.10536.1prot_H-paniculata_contig4081.10536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4081 2749..7398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.0172217-UTR-H-paniculata_contig4081:2252..27481622930248.0172217-UTR-H-paniculata_contig4081:2252..2748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4081 2253..2748 -
1691481209.1545975-UTR-H-paniculata_contig4081:2252..27481691481209.1545975-UTR-H-paniculata_contig4081:2252..2748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4081 2253..2748 -
1622930248.1697946-UTR-H-paniculata_contig4081:7398..75161622930248.1697946-UTR-H-paniculata_contig4081:7398..7516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4081 7399..7516 -
1691481209.2358027-UTR-H-paniculata_contig4081:7398..75161691481209.2358027-UTR-H-paniculata_contig4081:7398..7516Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4081 7399..7516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930248.0477784-CDS-H-paniculata_contig4081:2748..28561622930248.0477784-CDS-H-paniculata_contig4081:2748..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 2749..2856 -
1691481209.1736693-CDS-H-paniculata_contig4081:2748..28561691481209.1736693-CDS-H-paniculata_contig4081:2748..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 2749..2856 -
1622930248.0717983-CDS-H-paniculata_contig4081:3047..31401622930248.0717983-CDS-H-paniculata_contig4081:3047..3140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 3048..3140 -
1691481209.1845174-CDS-H-paniculata_contig4081:3047..31401691481209.1845174-CDS-H-paniculata_contig4081:3047..3140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 3048..3140 -
1622930248.0936272-CDS-H-paniculata_contig4081:3491..36351622930248.0936272-CDS-H-paniculata_contig4081:3491..3635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 3492..3635 -
1691481209.194766-CDS-H-paniculata_contig4081:3491..36351691481209.194766-CDS-H-paniculata_contig4081:3491..3635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 3492..3635 -
1622930248.1165345-CDS-H-paniculata_contig4081:4629..47421622930248.1165345-CDS-H-paniculata_contig4081:4629..4742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 4630..4742 -
1691481209.2053218-CDS-H-paniculata_contig4081:4629..47421691481209.2053218-CDS-H-paniculata_contig4081:4629..4742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 4630..4742 -
1622930248.1338046-CDS-H-paniculata_contig4081:5341..55821622930248.1338046-CDS-H-paniculata_contig4081:5341..5582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 5342..5582 -
1691481209.2172842-CDS-H-paniculata_contig4081:5341..55821691481209.2172842-CDS-H-paniculata_contig4081:5341..5582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 5342..5582 -
1622930248.1533577-CDS-H-paniculata_contig4081:7257..73981622930248.1533577-CDS-H-paniculata_contig4081:7257..7398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 7258..7398 -
1691481209.2269707-CDS-H-paniculata_contig4081:7257..73981691481209.2269707-CDS-H-paniculata_contig4081:7257..7398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4081 7258..7398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4081.10536.1

>prot_H-paniculata_contig4081.10536.1 ID=prot_H-paniculata_contig4081.10536.1|Name=mRNA_H-paniculata_contig4081.10536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MRKYISVLHCLRGREPPTLTQQLEAHGCRHHKTVRIFSAMSSQEASREDS
NVHYHTGTTGAKITVNEVKLKGRGDLSLACDWGVGIGGGLWSTGLLLIEH
LCTHAALYDEALRDRRVLELGSGTGLVGLAAARFGPPREVVITDLESHLD
MCRSNVDRNAASTATNQDCCKVIRVEKYDWSGEVPAQLGVVPFDIILGTD
VAYYEHLYDPFIRALDRTAGPNTLILLGVTRTDTGPAFFDALDKAGFEYN
LVEQASHKGFGLFSVFRERQEDQLSQPLH*
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mRNA from alignment at H-paniculata_contig4081:2253..7516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4081.10536.1 ID=mRNA_H-paniculata_contig4081.10536.1|Name=mRNA_H-paniculata_contig4081.10536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5264bp|location=Sequence derived from alignment at H-paniculata_contig4081:2253..7516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACAAAGGGTATCTTTGTTTCGCGTCAAACACGTTACTAAATGAGAGC
AGTTGCGATATGCCTCATATTGTAATTAGGTGGCACGCGGGTATGAGAAG
AAAAAAAGTGACATTTTCATGCGGAAATATATATCCGTCTTGCACTGTTT
AAGAGGGAGGGAGCCACCTACCTTAACACAACAATTAGAAGCACATGGGT
GCAGACACCACAAGACTGTGCGGATTTTCAGCGCCATGAGCAGCCAAGAA
GCGTCTCGGGTGAGTCTGAGTCGTTGAATGTGCACTTGGCTTGTACTTTC
TGTGGTATTCCAGGTAGGCGCGGAGGTGCTGTTAAATTATCGCGACCATC
ACATCGAAGCATCATGATGCGCTGAAGTCCTCTGTCAGTGTATCGCCTTC
TCCCGTCAGGTTTTTGCTCATAGTTCACGTCGTGCACAAATGTACATCGC
CAGCAGATCATGATATATCGCTGACTTTTTACAGTCATGAGCTCTTCAAA
GTCAAATTTCGAACCCGTGCACCTCGATATAGCGGTGAGTGACACCGCCT
GATTGGTCTATCTTGTGGATAATAACCAAACAATCCAACAGCTTCAAGAG
GCTGACCATACCTCCGTTTTGTTTCACGGTCATGTTTTCCACAGTTCAGA
CAGTAATCTGTGCATATCTGCTTGTACTTTTGACTCGCTCTTGACTCTAT
TGTAGTTCTTCCAACAGTATTCTCATACTCTCGATGCCGTCTTACTGATG
ACGCTCTCTTGAGCATTTGACGCATGCGGCTATGTCGCTGTGTAGTACTT
AATCGGTTGTAGAGTTCTTGTTTCTGCGTGAAGTATATTATTAAGTGTCT
TGTAACGCCCCCCTCCCCCACGCACACAGAGAGCACCTCCGAGACATACC
TAGTTCCTCACCTATTTTCTCAACAATGCCGAGGATGAATGCACCTACCG
AAGGCACATGTCTGGAATTTGGAAAGGTCTGAATGATTCCCCTTGAAGTC
AACTGTGCTCGACTGTTGTGTCCTCTTTTTTATGATAGTTTAACGGGGAA
ATCCATCACACCAACACCGTTATTCGTTGGACAAGTATTCAAGGGCAAGC
TGTTGACTGTACCCTTATCTACACACATCGAACTTAAAAACGCCTCGTCT
ACACGCTACCCTTGGAAACTTTTCACGAAATGACAGATACTATCGCTGCT
CCATCAAGCTGCATATAGTAGGAGATAGTTCAGATTCAGAAATATACCAT
TCAAGGCCAAACATTTTTTCCTGATTCAAGGGAAGCCGTGCTAAACGACG
TAGTCTGGTTTTCGATTTTCTGATTTTTGTTCGTTCGGAAACAATTTTCT
ACTGCGGTGGTTATTGCGGTATAGAGACTCTCCAACAAAAATCGGAACAC
TGAAAATCAGGCTCCGTCGTTTTTGGCACGGTCCTACGAGTATTTGTGCA
GGTTACAAATCCAGCCCAGCTCATCGTCATCTCCTGTCGGCCCTATTTTC
GTTGACCCTTATTCACCTGGGGTATTAAGTGCAGTCAAATGAATGGGTGG
ACTGATTGCTCCATCTATATCCGAATGGAAGAAATAATAGAGCAATGAAA
GATGGTGCCTCCCTGCTCCTTATCGTATGATGTTCATGCATCCATTCCTG
TTCCATTTTCCACTATTTTTTTCTTCTTCTTAGTTTGTTTTTTATCCCCA
GGAGACTAGGGCGAAACGTTCTCTAATGCTTGTACTAGGATAGTTACGTA
CTTCTAGGTTTCGTACGGCAGTTCTATCATGATGTTTTCATCAATTTTTA
CTTAAGCCAAGCGAGGCCCCCTCCTCTCTATTAACATATAGTATCTTCAG
ATGGTGCTGGAGAATAGCTAACTGACTCTTTCATTCACTCGATCGTCAGC
ATCAAAGTACTTGGTGTATTCCGGAACGAAACAGGAGGACTCGAATGTGC
ATTATCATACCGGAACAACTGGCGCCAAGATCACAGTGAACGAGGTGAAG
CTGAAAGGACGAGGAGACCTAAGCCTGGCATGCGATTGGGGGGTAGGGAT
AGGCGGGGGGCTTTGGAGCACCGGACTTCTCTTGATAGAGCACCTGTGCA
CGCATGCCGCTCTGTACGACGAGGCGCTCAGGGATAGACGAGTGCTGGAG
CTGGGATCTGGCACAGGATTGGTTGGTGAGAGAAGCAAAAATGTCATGGA
TAGATGTATGTCGCTAGGGGTATGGTGCATGTTGTACATGCAACACTCAC
CCACGATATATTTCCCTTCACCAGGCGGATCATGTTGTTAAATAAACGTT
CAAGAAGTTAGTTTACGCGGGTGTGGTATAGAGGCGTATTCGTCAACTCT
ACACGGCGGTCCTTCTTTGCTCCTAGCTCTATTTTCGTCGGTCAGTACGA
CGCGGTGAGCGCAAGCGCTACAAGTAGCAGCTTCGGGCCTGCGTACGCAT
CATTTGTAGATAGAAATGAGCTTTACTTGTTGGACTTGCTTGACTCCCTA
CCGCTGTCCGTGAATCGCTGTCTCCTCCAATTTATTCAGTGTGGGAAAAA
TAAATGCCGAGAAGGACACCATGTATCCAGAGCTCCAAAGCTATACATTC
CGCGTCTTCACTACACCACACTACACTACAATATTATACAGATTCAACAG
TTTCAGAAATTACTTCCGAGGGCCTGGTTCCGTGCACGATTACCTCGTTT
TAAAATCTTGTTCAACTGTTGTGAGCCCTTTGTGTCTGTGTGTGTCCTCT
TTTTGCATCGATTGAAAATGAAAGGTTTGGCGGCTGCACGGTTTGGTCCA
CCGCGAGAGGTGGTGATCACAGACCTGGAGAGTCATCTAGACATGTGCAG
GAGCAACGTGGACCGCAATGCTGCTTCTACCGCGACGGTAATTGCCGATA
ATTTTTCTTGTAGTGCTCTCCAATAGAAGCTGGATGTTCTCCCTCGTATC
GGGTGTCATTCTAGAGCTCTTCTCTGTTCTAGCAGTTAGCCAAGTTGCGC
CGGGAAAACGGTTGGATAATTGTTCGATGGCAACGCCATCACCTTACCGT
TCTAGTGTTGAAAAAATACTGTTTTTACCTGGAGTTGACTTTGCTTTTAC
AGAGCACAGAGCGTGGGCAAGAGATAGCCCATAACAAGTGAACATACTCG
TAGAGTAGTTGAAAACATTTTAGGATCCGCTCTACGCCTAAATCACCTTG
CCTCCATTGTGTTTCCGGCAGCAGCCAGTGCAAGGTTGCCTGACGGGGAG
CAGGGTCGTGCATAGGTAAGCGTGTTCTATCTTCTCTATTCACGCAAGCT
TGAATGAACCGCGGTGTTGGGGACGAAAGCTTGATTGCGGGGCAAGTTGA
ACGACACTTCCTCTAATCAATCTAAAGCCCGCGTGTTCTATATAGCATTG
GTCAGCCCCAGCCGTCGTCGATGCACTCCAAGGGCTTAAAAATGGTGCTG
TGTTTGAACTGTTTTTTTTGTCTTTTTTGGTTAGCGGCATCCTACTCGGC
GCTTCTTGAACTGGTGTGGTACCTGCACCGCAAGCCGCCAACTAAGGTGC
ATTAGTTAGTTGGTCTTCCGGCGGTATACAGGGATCAAGTCTTTTGTGCT
ACCGGGGGATCAGTAGCTTTGGAGCCAAGATATCTTCATTGTATTTGCTG
AGCTGAGCTGTAAAAGTAGAAATTAGTTCACTGAAACATTTACGTACCAA
GTACATGATCTAGTTAACATCAGGAACATGTGTGTATTGACTATAATTGT
ACGTTACAGTTGCTCCCTCTACCATGACGTTCTCCCATGACACATAATTC
GGCTCGCGTGCATGAAACGTTTTTTTTTGTGAAACAGCGCAATTCATGGG
TCTTCTTTGCCTTGATATGGTTGACCCGCAGAACCAGGATTGCTGTAAGG
TCATCCGCGTTGAAAAATATGATTGGAGCGGCGAGGTTCCGGCGCAGCTC
GGCGTGGTGCCGTTTGACATAATTTTGGGAACGGATGTAGCTTACTACGA
ACACCTATACGATCCTTTCATACGGGTGAGCGCACAAACCTTTCCATTAA
TAACTTGCAATCGAGGCAACTGTAGACAAAATTGTTCCACCCCTTACGCA
ATAGAGTCGTGTGCTCCATATGATCCAAGGCTCTGTCTGTGGAATTATAG
ACCGCTGTTTTTGTCCGACAAGCGCTACAGTCCATGCATATATCATTTGG
ACTCTGGAGTATATAGATTTTTTTAATGTACAACAACTCTATATACAGTT
CGCCCGCGATATTCACCGCTCGGTACGCGTTGGCCTCATTTCTAGAAATT
CGAATTTACACCTTTTTTCGTTCAACTCTTTCCCTCTCTCTCCTCTCTTC
GGGATATTTTGCAACACACAAAACAGGCCCTGGATCGCACGGCGGGACCC
AATACACTTATTTTGCTGGGAGTGACTCGAACTGACACGGGGCCTGCTTT
TTTCGACGCTCTAGATAAGGTGATATCAACACTGAAGTGATATCGGACTG
CTTATTATGGCATGTTAGTATATGATGCACTCGATAAAACACTGTACGTA
CAGCGTTCACGTGCTCATCATAGGGTCATACTGAGACTTTTTAGCAGCAG
TTTGTCACCCTCTCCCACACGTCCGGCCGCGCCTGGTTTGCATGCATATA
TGAAACACAGGCAGGGTTCGAGTATAATCTTGTGGAGCAGGCGTCGCACA
AGGGCTTCGGGTTGTTCAGCGTCTTCAGGGAACGACAAGAAGACCAGTTG
TCACAGCCGTTGCACTAATAGTATATTACAACACAGGGTACAAGTATTGC
AACACCTTCTATGGTAGTCGATGATCTTTTTTACTGAACCCGGGTTGATG
CCAAGACCACGGCGCTAGGTTCAGTTATTGTACAAGTGGCAATTGGCAAC
GGAGACCCGTCGCTAGAATTTAGGTCATTCGACAGACACTCCAGGGTCTT
CACTCGAAAAATTGCATTTGCAAATCAGCAATCTTTGCACAGTGCTCCAC
GCTTACTAGCTTCAGGGAAGTTATGGCAACAACCTACGCTCGTCCGTCAA
TTTTTGACAATGGAATCATCTTAGAGGTGGGAAATACACAATGGTTGACA
GGTGGCGTTGCTCTTATTCGAGTTGTATGTTTTTTCTTCGAAACCCGGTC
TTAAAACATCGTATTATATGTAGAGAAATCCAGAAGATATCAGAACTAGC
AAGCTTGACAGTGAGGCCGATTTCCCGCTCGACGCAACAGTGCGTAACCA
ACCCGCCCACACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4081:2253..7516-

>mRNA_H-paniculata_contig4081.10536.1 ID=mRNA_H-paniculata_contig4081.10536.1|Name=mRNA_H-paniculata_contig4081.10536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig4081:2253..7516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAAATATATATCCGTCTTGCACTGTTTAAGAGGGAGGGAGCCACC
TACCTTAACACAACAATTAGAAGCACATGGGTGCAGACACCACAAGACTG
TGCGGATTTTCAGCGCCATGAGCAGCCAAGAAGCGTCTCGGATGCGGAAA
TATATATCCGTCTTGCACTGTTTAAGAGGGAGGGAGCCACCTACCTTAAC
ACAACAATTAGAAGCACATGGGTGCAGACACCACAAGACTGTGCGGATTT
TCAGCGCCATGAGCAGCCAAGAAGCGTCTCGGGAGGACTCGAATGTGCAT
TATCATACCGGAACAACTGGCGCCAAGATCACAGTGAACGAGGTGAAGCT
GAAAGGACGAGGAGACCTAAGCCTGGCATGCGATTGGGGGGTAGGGATAG
GCGGGGGGCTTTGGAGCACCGGACTTCTCTTGATAGAGCACCTGTGCACG
CATGCCGCTCTGTACGACGAGGCGCTCAGGGATAGACGAGTGCTGGAGCT
GGGATCTGGCACAGGATTGGTTGGAGGACTCGAATGTGCATTATCATACC
GGAACAACTGGCGCCAAGATCACAGTGAACGAGGTGAAGCTGAAAGGACG
AGGAGACCTAAGCCTGGCATGCGATTGGGGGGTAGGGATAGGCGGGGGGC
TTTGGAGCACCGGACTTCTCTTGATAGAGCACCTGTGCACGCATGCCGCT
CTGTACGACGAGGCGCTCAGGGATAGACGAGTGCTGGAGCTGGGATCTGG
CACAGGATTGGTTGGTTTGGCGGCTGCACGGTTTGGTCCACCGCGAGAGG
TGGTGATCACAGACCTGGAGAGTCATCTAGACATGTGCAGGAGCAACGTG
GACCGCAATGCTGCTTCTACCGCGACGGTTTGGCGGCTGCACGGTTTGGT
CCACCGCGAGAGGTGGTGATCACAGACCTGGAGAGTCATCTAGACATGTG
CAGGAGCAACGTGGACCGCAATGCTGCTTCTACCGCGACGAACCAGGATT
GCTGTAAGGTCATCCGCGTTGAAAAATATGATTGGAGCGGCGAGGTTCCG
GCGCAGCTCGGCGTGGTGCCGTTTGACATAATTTTGGGAACGGATGTAGC
TTACTACGAACACCTATACGATCCTTTCATACGGAACCAGGATTGCTGTA
AGGTCATCCGCGTTGAAAAATATGATTGGAGCGGCGAGGTTCCGGCGCAG
CTCGGCGTGGTGCCGTTTGACATAATTTTGGGAACGGATGTAGCTTACTA
CGAACACCTATACGATCCTTTCATACGGGCCCTGGATCGCACGGCGGGAC
CCAATACACTTATTTTGCTGGGAGTGACTCGAACTGACACGGGGCCTGCT
TTTTTCGACGCTCTAGATAAGGCCCTGGATCGCACGGCGGGACCCAATAC
ACTTATTTTGCTGGGAGTGACTCGAACTGACACGGGGCCTGCTTTTTTCG
ACGCTCTAGATAAGGCAGGGTTCGAGTATAATCTTGTGGAGCAGGCGTCG
CACAAGGGCTTCGGGTTGTTCAGCGTCTTCAGGGAACGACAAGAAGACCA
GTTGTCACAGCCGTTGCACTAAGCAGGGTTCGAGTATAATCTTGTGGAGC
AGGCGTCGCACAAGGGCTTCGGGTTGTTCAGCGTCTTCAGGGAACGACAA
GAAGACCAGTTGTCACAGCCGTTGCACTAA
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