mRNA_H-paniculata_contig4080.10533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4080.10533.1
Unique NamemRNA_H-paniculata_contig4080.10533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4080.10533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4080contigH-paniculata_contig4080:12272..16588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008970.2
Exons3
Model size1324
Cds size1035
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4080.10533.1prot_H-paniculata_contig4080.10533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4080 12559..16588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.5639353-UTR-H-paniculata_contig4080:12271..125581622930247.5639353-UTR-H-paniculata_contig4080:12271..12558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4080 12272..12558 +
1691481209.0637634-UTR-H-paniculata_contig4080:12271..125581691481209.0637634-UTR-H-paniculata_contig4080:12271..12558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4080 12272..12558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.5859365-CDS-H-paniculata_contig4080:12558..127421622930247.5859365-CDS-H-paniculata_contig4080:12558..12742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 12559..12742 +
1691481209.0745995-CDS-H-paniculata_contig4080:12558..127421691481209.0745995-CDS-H-paniculata_contig4080:12558..12742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 12559..12742 +
1622930247.612773-CDS-H-paniculata_contig4080:15378..155821622930247.612773-CDS-H-paniculata_contig4080:15378..15582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 15379..15582 +
1691481209.082716-CDS-H-paniculata_contig4080:15378..155821691481209.082716-CDS-H-paniculata_contig4080:15378..15582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 15379..15582 +
1622930247.632403-CDS-H-paniculata_contig4080:15941..165881622930247.632403-CDS-H-paniculata_contig4080:15941..16588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 15942..16588 +
1691481209.090754-CDS-H-paniculata_contig4080:15941..165881691481209.090754-CDS-H-paniculata_contig4080:15941..16588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 15942..16588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4080.10533.1

>prot_H-paniculata_contig4080.10533.1 ID=prot_H-paniculata_contig4080.10533.1|Name=mRNA_H-paniculata_contig4080.10533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=345bp
MTRTSLWAMSLAVLSLSMAADASVSARKANYATGGVPHDARSNLLDAHMA
NGEAVYGRRLQLNWCSSIDENSYTCCGFNAEAACAQNGAEYVGPSNPCEV
VITEADNGNLSCEGTDEESGLLGDTCPCDSTPTPSTPAPLTDAPVTLSPV
TEAPVTPSPATASPATDSPATPSPATDTPVTPSPATDAPVTPSPATDAPV
TPSPVTPSPATATPATPAPATPAPETPAPETPAPATPAPSTPSLVTIAPL
SDTTMPPGAIPSPGATPTPTSASRDLGTMAPGATVEPASTMAPGATTEPA
GTTAPGATVEPASTMAPGATAEPAGTMAPGATAEPAGTMAPGATA
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mRNA from alignment at H-paniculata_contig4080:12272..16588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4080.10533.1 ID=mRNA_H-paniculata_contig4080.10533.1|Name=mRNA_H-paniculata_contig4080.10533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4317bp|location=Sequence derived from alignment at H-paniculata_contig4080:12272..16588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCCGTCCGGCAGGCTGGTCTTGTGCACAACGAGGTCGCATGCTGTAAG
TAGCTTGCTACTGCAATGTTGGGGTCCCTGCCCCACTTCCAAACTTGGTC
TATCTTTTCGGACATTTTTCCACCGCACTGACGGAATGATCTTTTTCTAC
AATTACACCCCTTCCCTTTCGTGCTTGGAATAAACAATCATCTTCTCACG
GGCCTTCATCGACACAGGTGTACAAGTGTACGTTACTCTGGATAGGACAG
AACTTGTGCTTACTTGCTACCTGGACCCAAGTCGAAGATGACCAGGACTT
CTCTATGGGCAATGTCTCTGGCGGTGCTCTCGCTGTCTATGGCGGCGGAC
GCAAGCGTCAGCGCCCGAAAGGCTAACTACGCTACTGGCGGTGTGCCACA
CGACGCGAGGTCCAACCTCCTGGATGCTCATATGGCGAATGGCGAGGCTG
TGTACGGACGTCGTCTTCAACGTGAGTGTGGCGTAACCTAATCTAGTGCT
CCGCTGTTCAGTGATGTATTGAATGTTGTGTTCTGCCCCATGTGTGGTTT
TTCTATCTGAGCCTTTTCTCGACCTCGTTGCTTTTCCAGAAGCTAGATGC
ATGTATTCGCGGAGTTTGTAGGCAAGTTTTTCATTTCTGCCTGGATCGGA
TCTTGTGCGTCTGAGACGCTGTACCGGAAAACCCACAATGATTTTCTGGG
GCGCCACAACCTTGACAGATAGCTTCTCCCCCTCCGGGTGAGCTTGCCTA
AGACAATGCGGAGTATCTCGTGCTGGGACCAGATCAAAAAGGTTTGTATT
AGCGGTCTCGCCAAGTTCGAATTTGTCCTTGAGGAAATCTAGATACACAG
ACTTACGCTGCGAGACTTACTTTTGATCGCCTGAAGACCTTACATTTCAT
GACCTGGCATCGAAATCGCGCAAACAATTTTTGGTCACGGTTGTATTGGC
ACAACAAAACATTGCTAATTTATGTACCAGGAACAATTATTAAAAAGTCG
GTGAGCGCGTCCATGTTCGAGGGTTTGACAGGGAAAAGGAACGGAGGAGA
GGACATGGGGGTACGCGCGGTGCTTGCCTCACTGACGTGTTGATATATGT
TCGTAGCTTCAGTAACCATAAAGATACGTCGGATGCATCGTGCGTCACCA
CCGGCATGAACCAAAAATGAAGTAGTGTAATCGCCCGCTCAGACAGATTC
TGAGAGTTTTTTCTTTGCTATAGTCACCCCACGAGACAGGACGAATATTC
GTCTTCGTGAAGTGAGCTAAAGTAAACCTATCCACGCGGCTGAGGGTCAG
CTCCGGCCCGTTCCTGTCCTACTCACAGCTTCCTGGTTGTTCTGTTCACG
TGTGACGGTGCCCTTTGTGAACCAACTGTGATGTGATCGGATAGTGTAGA
GAGCGGGTTGCCCGTCTTCATGTTTGTAGGAGCCACCAGTTCTGTGGACG
CTAGATGGATATGCCTTAACACGTGTGATATGATCCCTGACTGCCATCTG
GAGATTTTTGCCGTGGATATCGAACTTATTGTGTATGGTGCCCTTCAAAG
ATTGTGTTTGTCAGGATAGTAGGAGCATCTTCGAGTACACGTGTCGGGTA
TTATGTAATTTGAACAGGCAAGAGCGGTTCTTTACTTCGTGCATGTGCAG
TGGGTGCCTGGTGCCTTTTCTGGTACGGAGTCTCCTGTGACTGTCTGTAG
CTCCGTCTTGTCGAAAGTTCGCCTCCAACGAAGCTTATTTTCCCGTCGAG
CCTCTTGTCCACGTGTATTATGAGACACCTCTGTCCGGTCGATGGTCGGA
AGTAGTTAATGAAAACAGCTCAAGACCTAGCACGTTCAATTGCATCCGCC
GACGAGGATCATCTTTTTTCTCTAGTTTGGCGCGTTTTTCACGATCCGCT
AACCTGTCAAGAATCTGAGTATTCGAATATTTTTCATTTTTCATTTTCCT
CCACTATTCATACATTCATGGTTACTCCAAAAATCCGAGAGTTTACTGAC
AGTGTATCATGCAGCACGGAATGGGGTTCTGAGCATGTACTAATGTTGTA
CCTGTGAACGCCGTCAACCTTAGCGGGCGCAGCCTCCTCTGGTTGTTGAT
GATTGCACAGGTCTCTTGCTGTTGCTAGACCCGCCAGATTTTGTTGAACT
TGCATTCAACCGTCAGATTTCTGAATCGCGTTTCATGTGCGTAGACAAGA
TCTTCTCTGCAAATGATAGTAGGCCGATACTGCCAATGTTTGGTGTGAGT
ACGCATTGGGTTGCAGGGAGTGATGACCCAAACGTTGTGTTCCGGAAGAA
GGAGCTCTTGACAACGATCCGTTGGTGAGAAAGGGCAGTTCAGTTCATGT
GGAATCCAGAGCTCGGGGAGCTCTGAGGGTCGTGTGGTCATTTGTTTGAA
CTTTCGCTATTTCTCATTTCGGCTCCCTTGAGTCTACAGGATATATAATT
GTTCTATTCGTTTTCCCCTAACGTAAGACGTACGACTCCGCCGAACTAGG
GTATAATAGGCTCGGGGCAGATACAATCGGCAGTCATGGTCATAGTTTTT
GCCATCATGCGGATGCACTTGATCGAGAGGAATTTCCCACTATCGTTTTA
TGACGGAGAATGGCGCGAACATGCGACCACAGCAACATGCCTTCCTTAGC
TTCCAGATTCGGCCTATGTTGAGGCACTGACAGCTCCTGGGGAAATGTAT
TCATTCAAAACATCGACTGAGTACGTTAAATTCACTGTTTCATCCTAGAG
AGAGTGTTCATTGAAAAAGTATCCTTTGCCAGAGGTAATAAAATTCCCTC
GCGGATATATATGTTCGAATACTGTGTACCCCTCTTTCATATTTCGGAAA
TCGTTAAAAACTGCATCTCCACCGCCAACAACGTTGAAAAATAATATGTC
GTTTTAGAGAGATGGAAGGGCTTCCATTCTTGCCATTTGCATATCTGTAT
GGGTTGTTCCCAAAGCTGCAATGTATGCGCTATAGTGAGTGATCCAACTG
CGAAATAGCCCTGTGCCACAATGACGGATTTATTAGCTAACGATGTTCAA
ACTCGCCCGTCCCATTCATGCCTATCGAAACCCTACGTGTCATTCGCGTA
TGAGTAGTCAACTGGTGCTCAAGCATCGATGAAAACAGCTACACCTGCTG
TGGCTTCAACGCTGAGGCGGCGTGCGCGCAAAACGGTGCTGAGTACGTGG
GACCCTCAAACCCTTGCGAAGTCGTCATCACAGAGGCAGACAACGGGAAC
CTGTCCTGCGAGGGTACCGATGAGGAGAGCGGTCTCCTCGGAGATACTTG
CCCCTGCGACTGTGAGTACTCTGCTGTTTCCGGCGCGTCATCGAATGTTC
TCATCGTCCATGACCGTGTCGACGATAATATTTTCTAGTGGAATGGTCCA
GCTCAAGATATCATATGCCAGTGGACTGTACAACCATAGTCTTCGTGATT
ACTGTTTTTTGGTGCAAATGCTGGTATATGAACCACATACTCGAACGGCT
GTCATTCGTCGATCGTTTCATGTTCCTGACTCCGCCCACGGCGCACAATA
CATTCACTTCAAAACTAATATGAACACTCCGACCCTTGTCCCCCCATCCG
CGTCTTGTCGCTTGATTTTAAACTCCTTACAATCCCTGCCACCCACCCCC
ACCCCTCCCCTCCATTTCAGCGACGCCCACGCCTTCCACCCCGGCGCCCC
TTACCGATGCACCCGTTACTCTCTCCCCTGTGACTGAAGCGCCCGTAACC
CCTTCGCCTGCTACAGCCTCTCCTGCGACCGATTCCCCTGCTACCCCGTC
GCCTGCTACCGATACACCTGTAACCCCTTCCCCTGCTACTGATGCGCCTG
TAACCCCTTCCCCTGCTACTGATGCGCCTGTAACCCCTTCCCCTGTTACA
CCCTCGCCTGCTACCGCAACCCCAGCAACCCCTGCCCCAGCCACCCCTGC
CCCGGAAACGCCTGCCCCGGAAACGCCTGCGCCGGCCACTCCAGCCCCAT
CAACACCTTCGTTGGTCACCATCGCTCCTTTATCTGACACCACAATGCCG
CCCGGAGCCATCCCCTCTCCAGGTGCGACCCCGACACCCACGTCGGCCTC
CCGGGACTTGGGTACTATGGCGCCTGGGGCTACGGTGGAGCCTGCCAGTA
CTATGGCGCCTGGGGCTACCACGGAGCCGGCCGGTACTACGGCGCCTGGG
GCTACCGTGGAGCCTGCCAGTACTATGGCGCCTGGAGCTACCGCGGAGCC
CGCCGGTACTATGGCGCCTGGAGCTACCGCGGAGCCCGCCGGTACTATGG
CGCCTGGAGCTACCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4080:12272..16588+

>mRNA_H-paniculata_contig4080.10533.1 ID=mRNA_H-paniculata_contig4080.10533.1|Name=mRNA_H-paniculata_contig4080.10533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at H-paniculata_contig4080:12272..16588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGACTTCTCTATGGGCAATGTCTCTGGCGGTGCTCTCGCTGTC
TATGGCGGCGGACGCAAGCGTCAGCGCCCGAAAGGCTAACTACGCTACTG
GCGGTGTGCCACACGACGCGAGGTCCAACCTCCTGGATGCTCATATGGCG
AATGGCGAGGCTGTGTACGGACGTCGTCTTCAACATGACCAGGACTTCTC
TATGGGCAATGTCTCTGGCGGTGCTCTCGCTGTCTATGGCGGCGGACGCA
AGCGTCAGCGCCCGAAAGGCTAACTACGCTACTGGCGGTGTGCCACACGA
CGCGAGGTCCAACCTCCTGGATGCTCATATGGCGAATGGCGAGGCTGTGT
ACGGACGTCGTCTTCAACTCAACTGGTGCTCAAGCATCGATGAAAACAGC
TACACCTGCTGTGGCTTCAACGCTGAGGCGGCGTGCGCGCAAAACGGTGC
TGAGTACGTGGGACCCTCAAACCCTTGCGAAGTCGTCATCACAGAGGCAG
ACAACGGGAACCTGTCCTGCGAGGGTACCGATGAGGAGAGCGGTCTCCTC
GGAGATACTTGCCCCTGCGACTTCAACTGGTGCTCAAGCATCGATGAAAA
CAGCTACACCTGCTGTGGCTTCAACGCTGAGGCGGCGTGCGCGCAAAACG
GTGCTGAGTACGTGGGACCCTCAAACCCTTGCGAAGTCGTCATCACAGAG
GCAGACAACGGGAACCTGTCCTGCGAGGGTACCGATGAGGAGAGCGGTCT
CCTCGGAGATACTTGCCCCTGCGACTCGACGCCCACGCCTTCCACCCCGG
CGCCCCTTACCGATGCACCCGTTACTCTCTCCCCTGTGACTGAAGCGCCC
GTAACCCCTTCGCCTGCTACAGCCTCTCCTGCGACCGATTCCCCTGCTAC
CCCGTCGCCTGCTACCGATACACCTGTAACCCCTTCCCCTGCTACTGATG
CGCCTGTAACCCCTTCCCCTGCTACTGATGCGCCTGTAACCCCTTCCCCT
GTTACACCCTCGCCTGCTACCGCAACCCCAGCAACCCCTGCCCCAGCCAC
CCCTGCCCCGGAAACGCCTGCCCCGGAAACGCCTGCGCCGGCCACTCCAG
CCCCATCAACACCTTCGTTGGTCACCATCGCTCCTTTATCTGACACCACA
ATGCCGCCCGGAGCCATCCCCTCTCCAGGTGCGACCCCGACACCCACGTC
GGCCTCCCGGGACTTGGGTACTATGGCGCCTGGGGCTACGGTGGAGCCTG
CCAGTACTATGGCGCCTGGGGCTACCACGGAGCCGGCCGGTACTACGGCG
CCTGGGGCTACCGTGGAGCCTGCCAGTACTATGGCGCCTGGAGCTACCGC
GGAGCCCGCCGGTACTATGGCGCCTGGAGCTACCGCGGAGCCCGCCGGTA
CTATGGCGCCTGGAGCTACCGCGCGACGCCCACGCCTTCCACCCCGGCGC
CCCTTACCGATGCACCCGTTACTCTCTCCCCTGTGACTGAAGCGCCCGTA
ACCCCTTCGCCTGCTACAGCCTCTCCTGCGACCGATTCCCCTGCTACCCC
GTCGCCTGCTACCGATACACCTGTAACCCCTTCCCCTGCTACTGATGCGC
CTGTAACCCCTTCCCCTGCTACTGATGCGCCTGTAACCCCTTCCCCTGTT
ACACCCTCGCCTGCTACCGCAACCCCAGCAACCCCTGCCCCAGCCACCCC
TGCCCCGGAAACGCCTGCCCCGGAAACGCCTGCGCCGGCCACTCCAGCCC
CATCAACACCTTCGTTGGTCACCATCGCTCCTTTATCTGACACCACAATG
CCGCCCGGAGCCATCCCCTCTCCAGGTGCGACCCCGACACCCACGTCGGC
CTCCCGGGACTTGGGTACTATGGCGCCTGGGGCTACGGTGGAGCCTGCCA
GTACTATGGCGCCTGGGGCTACCACGGAGCCGGCCGGTACTACGGCGCCT
GGGGCTACCGTGGAGCCTGCCAGTACTATGGCGCCTGGAGCTACCGCGGA
GCCCGCCGGTACTATGGCGCCTGGAGCTACCGCGGAGCCCGCCGGTACTA
TGGCGCCTGGAGCTACCGCG
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