mRNA_H-paniculata_contig40799.10530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40799.10530.1
Unique NamemRNA_H-paniculata_contig40799.10530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.000e-8
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:    1 VQEESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGNLTMTFRTSNGNVPLSVL--NVA-----HAPELHYNLFSL 240
              ++ WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  + P  V   NV      H P+L +NL S+
Sbjct:  360 TMKDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
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BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 55.1 bits (131), Expect = 8.780e-7
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   10 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLTMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 264
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++ +  +TS+G++  ++ NV H P L  NL S+ ++ D G+
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347
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BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 55.1 bits (131), Expect = 8.870e-7
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   10 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLTMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 264
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++ +  +TS+G++  ++ NV H P L  NL S+ ++ D G+
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243
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BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 53.5 bits (127), Expect = 2.900e-6
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   10 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLTMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 264
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++ +  RTS+G+   ++ NV H P L  NL S+ ++ D G+
Sbjct:  288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGH 370
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BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 53.5 bits (127), Expect = 3.060e-6
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   10 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLTMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 264
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++ +  RTS+G+   ++ NV H P L  NL S+ ++ D G+
Sbjct:  266 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGH 348
[Close]
BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 50.4 bits (119), Expect = 3.550e-5
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:    7 EESWICDSGATGHATPSAANMSSYRQV-KETLRIASGQVIPIVGRGNLTMTFRTSNGNVPL-SVLNVAHAPELHYNLFSLRKVAD 255
            + +W  DSG T + T S       + +  +T+ +     IPI+G+G + MT   + G+  + S+ +V +APEL +NL S+R+  D
Sbjct:  378 DPAWTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVD 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40799.10530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA5.000e-835.63Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
A0A445M2Q0_GLYSO8.780e-738.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO8.870e-738.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA2.900e-638.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA3.060e-638.37Retrovirus-related Pol polyprotein from transposon... [more]
H3H469_PHYRM3.550e-531.76Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40799contigH-paniculata_contig40799:624..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue5e-09
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.300947-CDS-H-paniculata_contig40799:623..8901622930247.300947-CDS-H-paniculata_contig40799:623..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40799 624..890 -
1691481208.963983-CDS-H-paniculata_contig40799:623..8901691481208.963983-CDS-H-paniculata_contig40799:623..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40799 624..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40799.10530.1prot_H-paniculata_contig40799.10530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40799 624..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40799.10530.1

>prot_H-paniculata_contig40799.10530.1 ID=prot_H-paniculata_contig40799.10530.1|Name=mRNA_H-paniculata_contig40799.10530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
VQEESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGNLT
MTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN*
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mRNA from alignment at H-paniculata_contig40799:624..890-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40799.10530.1 ID=mRNA_H-paniculata_contig40799.10530.1|Name=mRNA_H-paniculata_contig40799.10530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig40799:624..890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAAC
ACCATCTGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGC
GGATTGCATCAGGACAAGTGATCCCAATTGTTGGTCGGGGAAACCTGACC
ATGACATTTAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGT
CGCACATGCCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGG
CTGATGCCGGTAATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40799:624..890-

>mRNA_H-paniculata_contig40799.10530.1 ID=mRNA_H-paniculata_contig40799.10530.1|Name=mRNA_H-paniculata_contig40799.10530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig40799:624..890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAAC
ACCATCTGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGC
GGATTGCATCAGGACAAGTGATCCCAATTGTTGGTCGGGGAAACCTGACC
ATGACATTTAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGT
CGCACATGCCCCTGAACTGCACTACAATTTATTTTCGCTGAGGAAAGTGG
CTGATGCCGGTAATTAAGTACAGGAAGAGTCGTGGATTTGTGATAGTGGG
GCCACAGGTCATGCAACACCATCTGCGGCTAACATGTCTAGCTATCGGCA
AGTCAAAGAGACGCTGCGGATTGCATCAGGACAAGTGATCCCAATTGTTG
GTCGGGGAAACCTGACCATGACATTTAGGACGAGTAATGGAAATGTGCCT
CTCTCGGTTCTGAATGTCGCACATGCCCCTGAACTGCACTACAATTTATT
TTCGCTGAGGAAAGTGGCTGATGCCGGTAATTAA
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