mRNA_H-paniculata_contig40790.10529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40790.10529.1
Unique NamemRNA_H-paniculata_contig40790.10529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40790.10529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40790contigH-paniculata_contig40790:448..1185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40790.10529.1prot_H-paniculata_contig40790.10529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40790 449..1130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.1618207-UTR-H-paniculata_contig40790:447..4481622930247.1618207-UTR-H-paniculata_contig40790:447..448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40790 448..448 -
1691481208.9239776-UTR-H-paniculata_contig40790:447..4481691481208.9239776-UTR-H-paniculata_contig40790:447..448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40790 448..448 -
1622930247.2293332-UTR-H-paniculata_contig40790:1130..11851622930247.2293332-UTR-H-paniculata_contig40790:1130..1185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40790 1131..1185 -
1691481208.9540699-UTR-H-paniculata_contig40790:1130..11851691481208.9540699-UTR-H-paniculata_contig40790:1130..1185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40790 1131..1185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.1878848-CDS-H-paniculata_contig40790:448..5571622930247.1878848-CDS-H-paniculata_contig40790:448..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40790 449..557 -
1691481208.934522-CDS-H-paniculata_contig40790:448..5571691481208.934522-CDS-H-paniculata_contig40790:448..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40790 449..557 -
1622930247.2091131-CDS-H-paniculata_contig40790:1005..11301622930247.2091131-CDS-H-paniculata_contig40790:1005..1130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40790 1006..1130 -
1691481208.9444008-CDS-H-paniculata_contig40790:1005..11301691481208.9444008-CDS-H-paniculata_contig40790:1005..1130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40790 1006..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40790.10529.1

>prot_H-paniculata_contig40790.10529.1 ID=prot_H-paniculata_contig40790.10529.1|Name=mRNA_H-paniculata_contig40790.10529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MGDTVISLGAESSQIMETALDRAKKVEVLVSSPDGAREEVARFSFTMVFY
RIGSQLMQCLPKLKQWWQQKWKGNAPL*
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mRNA from alignment at H-paniculata_contig40790:448..1185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40790.10529.1 ID=mRNA_H-paniculata_contig40790.10529.1|Name=mRNA_H-paniculata_contig40790.10529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig40790:448..1185- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTCAGTACTACTGATAATGGCTTGTTCTTATTTGGTATGGCAGGTACT
CCAACATGGGAGATACAGTCATCTCGCTGGGCGCTGAGAGTAGTCAAATT
ATGGAGACGGCGCTTGATCGTGCGAAGAAGGTTGAGGTCCTCGTGTCTTC
TCCTGATGGTGCGCGAGAAGAGGTTGCAAGGTGAGCAGAAACGGCTTTCT
TGGCGGCTTACAAGGAGGGGAAGTTCAAGGTCAGTACAGCGTCGGAGATT
GTCCAATGTTTGGTGTGGTGTTGTGTGCGACAGTCATCAACATCTACAAG
TAAATGCGTTGCCCAAGCACTGTCACTATCTGCAGCACCAAACAGCTGAG
CCAGTTATGAAAACTTTGTCAACGCCGATTGACAGAGATGCCTCAGTAGT
AGTGCCACCCGAAGAAAGCCACTTAAGGCTTGGACAAAAGAACGTATTAA
TTAACGGAAGCCGAACTGTTTAGTTGACATTGATGCGTGTTGAGAAGCTG
TTTTGTTCGCGCTGCCGTTTCTTGATGATGCAGACACATTTTATTATGTT
GTGTATAGTACGTACGATGACTACTATGTAACATGTTCCCCCATGCTCCC
CTTGTCATCATCATCCCCGACCATTGAGGTTCTCATTCACCATGGTATTC
TACCGGATAGGGTCCCAGTTGATGCAATGCCTGCCAAAATTAAAGCAATG
GTGGCAGCAGAAGTGGAAAGGCAATGCGCCACTTTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40790:448..1185-

>mRNA_H-paniculata_contig40790.10529.1 ID=mRNA_H-paniculata_contig40790.10529.1|Name=mRNA_H-paniculata_contig40790.10529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig40790:448..1185- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGATACAGTCATCTCGCTGGGCGCTGAGAGTAGTCAAATTATGGA
GACGGCGCTTGATCGTGCGAAGAAGGTTGAGGTCCTCGTGTCTTCTCCTG
ATGGTGCGCGAGAAGAGGTTGCAAGATGGGAGATACAGTCATCTCGCTGG
GCGCTGAGAGTAGTCAAATTATGGAGACGGCGCTTGATCGTGCGAAGAAG
GTTGAGGTCCTCGTGTCTTCTCCTGATGGTGCGCGAGAAGAGGTTGCAAG
GTTCTCATTCACCATGGTATTCTACCGGATAGGGTCCCAGTTGATGCAAT
GCCTGCCAAAATTAAAGCAATGGTGGCAGCAGAAGTGGAAAGGCAATGCG
CCACTTTGAGTTCTCATTCACCATGGTATTCTACCGGATAGGGTCCCAGT
TGATGCAATGCCTGCCAAAATTAAAGCAATGGTGGCAGCAGAAGTGGAAA
GGCAATGCGCCACTTTGA
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