mRNA_H-paniculata_contig4072.10521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4072.10521.1
Unique NamemRNA_H-paniculata_contig4072.10521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: D7G3X8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3X8_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 8.620e-111
Identity = 238/454 (52.42%), Postives = 279/454 (61.45%), Query Frame = 3 
Query:  351 MQQATELNDSIKEMHTFLLQHFHDYIDLHHSLPSQRSVMSDEDKDIIDLEVTSFMTACAAGVDALKALLQRERLRRLE----ASASNGGVGNGAGI-DNGGV-AGGGMRPGSRPAHENVAVTFLFERLKAVTEVAETMQTERNKRTVEQKARFYAGPATRSRTASEAA-AAATPASAIAATGDVWRPTPEELEEERLFEESLMRPSLGIAERPNSAKVLGTGHSGVMVPPGAAEATTPSPISTSTRESSSLSLSSSRPQPALESLPHAAISALSTTGFVGMNSGSAALDRRRQPLNNDGSAAFDERASEAAAERGRGREDGRRYRGGGVGGRGLGTWGDDGAENSGGPLVSSDALQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFYR 1691
            MQQATELN SI+EMHTFL QHF DY+D+HH LPS+RS+MSDE+KD+IDLEVTSFMTACAAGVDALKALLQRERLRR+E    A+ + G  G G+ + D GGV AGG +RPGSRPAHEN AVTFLFERLKAVTEVAE MQTER+ R    ++RFY GPA  S  +  A   A+     +AA   VW  TPEELEEERL  ESL       +  P +        +G +    A  ATT + +             S  P  A ++   AA++  +T G                                                                  ++ G +VS+  L+ EN DLVAR +NELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLV GGQHLEKAV+RGG FR+FY+WFM+ ASFCLLFLHF+ 
Sbjct:    1 MQQATELNYSIREMHTFLRQHFLDYVDVHHCLPSKRSLMSDEEKDLIDLEVTSFMTACAAGVDALKALLQRERLRRMEQEAAAARAEGADGRGSSLLDEGGVGAGGELRPGSRPAHENAAVTFLFERLKAVTEVAEAMQTERHARAAAGQSRFYGGPADSSGASGGAGDEASRHGGPLAAASAVWGATPEELEEERLLRESLPAAYGDSSPSPPALTPAAEDLAGGL----AGFATTAAGVPER----------SQTPPLAADAADAAAVAETATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXGSADGGVVSAAVLEGENRDLVARLKNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVRGGQHLEKAVQRGGGFRLFYAWFMMIASFCLLFLHFFN 425
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A7S3Y6Y2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Y2_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 9.480e-14
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 3 
Query: 1392 LQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFY 1688
            LQ EN +L+A  QNELD  + +E+KM+EIS LM LF++KV+EQQ  +E +   A  A+  +  G ++++KA E  G FR  Y  F++  SF LLFLH+Y
Sbjct:  231 LQEENHNLLADLQNELDSVKQIESKMAEISTLMSLFSTKVMEQQTEIEQLGTLAQKASTNIEQGNKYIDKASEIQGGFRKIYVTFIMTLSFILLFLHWY 329
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A813M466_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M466_POLGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.340e-7
Identity = 33/101 (32.67%), Postives = 61/101 (60.40%), Query Frame = 3 
Query: 1377 VSSDALQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFY-SWFMIGASFCLLF 1676
            + ++ L+AE   L++ +  +LD  +  ++K+ E+S ++GLFA+KV EQ    + + D A  +   + +  +HL+KAV+   A+R +   WF+  ASF L+F
Sbjct:  167 LDAEMLRAEEQRLLSTFTTDLDKIQETQSKIEEVSAMVGLFATKVAEQTEQADQILDLAEESTAYIETAEKHLQKAVQNSNAYRFYVVCWFVGSASFLLVF 267
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A0G4GG12_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GG12_VITBC)

HSP 1 Score: 63.2 bits (152), Expect = 3.610e-7
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 3 
Query: 1392 LQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFYRT 1694
            L A+   L+  Y  +LD  R  ++K+SEIS LMG FA+KV EQ    E +   A  + + +   G+HL KA++R  ++R +   F I AS  LL L + ++
Sbjct:  191 LSAQTQQLLNMYNTDLDALRDAQSKVSEISQLMGFFATKVAEQNELCEQIASMAGESVELMGKAGRHLSKAIQRSNSYRFYCVMFFIVASVILLVLDWIKS 291
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A4W5N1C8_9TELE (Syntaxin-18 n=12 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A4W5N1C8_9TELE)

HSP 1 Score: 62.4 bits (150), Expect = 8.890e-7
Identity = 32/99 (32.32%), Postives = 58/99 (58.59%), Query Frame = 3 
Query: 1392 LQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFY 1688
             + EN  LV+   N +++ RL+E K+ EIS L  +FA KV+ Q+  ++ +    V A + +  G + + +A++    FR++  +F++  SF LLFL +Y
Sbjct:  231 FEQENQRLVSEMSNLVEEVRLIEGKVVEISRLQEIFAEKVLMQETEIDSIHQLVVGATENVKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWY 329
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A4Y7T863_9AGAR (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7T863_9AGAR)

HSP 1 Score: 62.8 bits (151), Expect = 9.360e-7
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 3 
Query: 1374 LVSSDALQ--AENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFY 1688
            L  S  LQ  AENA L+   Q++L+     E ++SEIS L     + + +Q    + +F+ A++    +  G   L+KA +RG   R+F   F+ GASF LLFLH+Y
Sbjct:  290 LSQSQILQFEAENAALLRNVQDQLESVHQAEARLSEISALQMELVTHLTQQTELTDQLFEDAIATTSTVEKGKAELKKAQQRGKDGRLFLLVFLFGASFSLLFLHYY 396
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A8H5C9Q3_9AGAR (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C9Q3_9AGAR)

HSP 1 Score: 60.8 bits (146), Expect = 3.840e-6
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 3 
Query: 1374 LVSSDALQ--AENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFY 1688
            L SS  LQ  AENA L+   Q+ L+  +  E+++SEIS L     + +  Q    + +++ A++    +      L+KA +RG   R+F   F+ GASF LLFLH+Y
Sbjct:  289 LTSSQILQFEAENAALLRNVQDNLESVQQAESRLSEISALQMELVTHLTRQTELTDQLYEDAIATTSTVEKSKAELKKAQQRGKDGRLFLLVFLFGASFSLLFLHYY 395
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A6A3SCP9_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SCP9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-5
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 3 
Query: 1392 LQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFYRT 1694
             + EN  L   +Q  L+DA+ +E+KM+EIS LMG FA K++EQQ  +E +   A      +    + LE+  + G  +      F +G S  L  LH++ +
Sbjct:  256 FRVENVMLHRHFQENLEDAKKLESKMAEISNLMGQFADKIMEQQNDIELIHQHAQETKSNVTQSNRILEQTQKIGKGYGFMIFCFYLGFSVVLHMLHYFNS 356
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A165RZ08_9AGAM (Syntaxin-18_N domain-containing protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165RZ08_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-5
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 3 
Query: 1374 LVSSDALQ--AENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFY 1688
            L  S  +Q  +EN+ ++   QN L+  +L E+++ EIS L     + +  Q    + +F+ A+++   +  G + L +A +R    R+F   F++GASF LLFLH+Y
Sbjct:  298 LTQSQIMQFESENSQILHSMQNTLESVQLAESRLLEISALQTELVAHLTRQTELTDQLFEDAIASTGMVEKGNEQLREAKKRAKDSRIFILVFLLGASFSLLFLHYY 404
[Close]
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Match: A0A0W8D429_PHYNI (t-SNARE coiled-coil homology domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D429_PHYNI)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-5
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 3 
Query: 1392 LQAENADLVARYQNELDDARLVETKMSEISGLMGLFASKVVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGASFCLLFLHFYRT 1694
             + EN  L   +Q  L+DA+ +E+KM+EIS LMG FA K++EQQ  +E +   A      +    + LE+  + G  +      F +G S  L  LH++ +
Sbjct:  197 FRVENVMLHRHFQENLEDAKKMESKMAEISNLMGQFADKIMEQQTDIELIQQHAQETKSNITQSNRILEQTQKIGKGYGFMIFCFYVGFSVLLHMLHYFNS 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4072.10521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G3X8_ECTSI8.620e-11152.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y6Y2_HETAK9.480e-1446.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813M466_POLGL2.340e-732.67Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A0G4GG12_VITBC3.610e-736.63Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4W5N1C8_9TELE8.890e-732.32Syntaxin-18 n=12 Tax=Euteleosteomorpha TaxID=14893... [more]
A0A4Y7T863_9AGAR9.360e-736.45t-SNARE coiled-coil homology domain-containing pro... [more]
A0A8H5C9Q3_9AGAR3.840e-635.51t-SNARE coiled-coil homology domain-containing pro... [more]
A0A6A3SCP9_9STRA1.350e-532.67t-SNARE coiled-coil homology domain-containing pro... [more]
A0A165RZ08_9AGAM1.620e-531.78Syntaxin-18_N domain-containing protein n=1 Tax=Ne... [more]
A0A0W8D429_PHYNI1.680e-532.67t-SNARE coiled-coil homology domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4072contigH-paniculata_contig4072:1671..6795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.5
Seed ortholog evalue1.3e-96
Seed eggNOG ortholog2880.D7G3X8
Preferred nameSTX18
KEGG koko:K08492
KEGG Pathwayko04130,ko04145,map04130,map04145
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006810,GO:0006888,GO:0006890,GO:0006996,GO:0007029,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007528,GO:0008150,GO:0009987,GO:0010256,GO:0010638,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019904,GO:0023052,GO:0031201,GO:0031594,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045202,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050808,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0060628,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0071944,GO:0090158,GO:0098796,GO:0098827,GO:0098916,GO:0099536,GO:0099537,GO:0099568,GO:1902115,GO:1902117,GO:1902953,GO:1903358
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG3894@1,KOG3894@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size1915
Cds size1539
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930246.0391622-UTR-H-paniculata_contig4072:1670..18881622930246.0391622-UTR-H-paniculata_contig4072:1670..1888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4072 1671..1888 -
1691481208.4049911-UTR-H-paniculata_contig4072:1670..18881691481208.4049911-UTR-H-paniculata_contig4072:1670..1888Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4072 1671..1888 -
1622930246.1599934-UTR-H-paniculata_contig4072:6637..67951622930246.1599934-UTR-H-paniculata_contig4072:6637..6795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4072 6638..6795 -
1691481208.471017-UTR-H-paniculata_contig4072:6637..67951691481208.471017-UTR-H-paniculata_contig4072:6637..6795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4072 6638..6795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930246.0509145-CDS-H-paniculata_contig4072:1888..21101622930246.0509145-CDS-H-paniculata_contig4072:1888..2110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 1889..2110 -
1691481208.4152439-CDS-H-paniculata_contig4072:1888..21101691481208.4152439-CDS-H-paniculata_contig4072:1888..2110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 1889..2110 -
1622930246.083361-CDS-H-paniculata_contig4072:3125..38511622930246.083361-CDS-H-paniculata_contig4072:3125..3851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 3126..3851 -
1691481208.4239101-CDS-H-paniculata_contig4072:3125..38511691481208.4239101-CDS-H-paniculata_contig4072:3125..3851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 3126..3851 -
1622930246.1143093-CDS-H-paniculata_contig4072:4242..45361622930246.1143093-CDS-H-paniculata_contig4072:4242..4536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 4243..4536 -
1691481208.4340622-CDS-H-paniculata_contig4072:4242..45361691481208.4340622-CDS-H-paniculata_contig4072:4242..4536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 4243..4536 -
1622930246.127297-CDS-H-paniculata_contig4072:5080..51761622930246.127297-CDS-H-paniculata_contig4072:5080..5176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 5081..5176 -
1691481208.446989-CDS-H-paniculata_contig4072:5080..51761691481208.446989-CDS-H-paniculata_contig4072:5080..5176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 5081..5176 -
1622930246.1413276-CDS-H-paniculata_contig4072:6436..66371622930246.1413276-CDS-H-paniculata_contig4072:6436..6637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 6437..6637 -
1691481208.4621103-CDS-H-paniculata_contig4072:6436..66371691481208.4621103-CDS-H-paniculata_contig4072:6436..6637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4072 6437..6637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4072.10521.1prot_H-paniculata_contig4072.10521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4072 1889..6637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4072.10521.1

>prot_H-paniculata_contig4072.10521.1 ID=prot_H-paniculata_contig4072.10521.1|Name=mRNA_H-paniculata_contig4072.10521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=513bp
MSSAAIDLTKEWRALVGVVRVQLSSSTSGASGRSTGVLWGVSSAEAAATA
AEFASPWRTPLTPFMQQATELNDSIKEMHTFLLQHFHDYIDLHHSLPSQR
SVMSDEDKDIIDLEVTSFMTACAAGVDALKALLQRERLRRLEASASNGGV
GNGAGIDNGGVAGGGMRPGSRPAHENVAVTFLFERLKAVTEVAETMQTER
NKRTVEQKARFYAGPATRSRTASEAAAAATPASAIAATGDVWRPTPEELE
EERLFEESLMRPSLGIAERPNSAKVLGTGHSGVMVPPGAAEATTPSPIST
STRESSSLSLSSSRPQPALESLPHAAISALSTTGFVGMNSGSAALDRRRQ
PLNNDGSAAFDERASEAAAERGRGREDGRRYRGGGVGGRGLGTWGDDGAE
NSGGPLVSSDALQAENADLVARYQNELDDARLVETKMSEISGLMGLFASK
VVEQQGGMEHVFDAAVSANDKLVSGGQHLEKAVERGGAFRMFYSWFMIGA
SFCLLFLHFYRT*
back to top

mRNA from alignment at H-paniculata_contig4072:1671..6795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4072.10521.1 ID=mRNA_H-paniculata_contig4072.10521.1|Name=mRNA_H-paniculata_contig4072.10521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5125bp|location=Sequence derived from alignment at H-paniculata_contig4072:1671..6795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAATTTCCTGTGGCATCTATTGGTTTGTTCCTCCAAGCTTTCGGTTTG
GAACTGTGCTGTAGAGCTAGCGACCTCGGCGCGAATTCCAAATGTAGGTT
GTGCTCCTGATCACGCTGACTACTTTCCCTTGCCGGTATTCTTTTCGCTT
CTCTCCCAATGTCGAGCGCAGCGATAGACCTTACCAAGGAATGGCGTGCT
CTCGTAGGCGTTGTCCGGGTTCAACTCTCATCTTCCACGTCGGGGGCTAG
TGGCCGCAGTACTGGAGTATTGTGGGGAGTGTCCTCCGCTGAAGCTGCTG
CTACTGCTGCTGAGTTTGCTTCGCCATGGAGAACTCCGTTGACTCCTTTC
ATGCAGCAGGTAGACGACATCAAACAGTTGCAGGTCGTGCACTCTGTGTT
AAGAAAGGATGATGCTTTCACTACGCATGACGAACAATAGTTCTGGCTCT
GTTCGGTACTAGGTGCAGTATTGCCGGCAGCATTGACCCTCTAGAAGTAT
AGTATCGCAATGTTGTTTTTACGGCTGGGAGATGAGAGATGATAACGATG
TATGTAATTTTAGCCGCTTCTACCAAAGCCAGGGGCAGCTGTGTGCTTCT
AAAAATTGCGCGGAGTTATGGTTGTACACATGAGGCTACGATGATCACTG
CTGCGTAGTTTCAGCGGATTTCATTTGCAATTGAGAGCAAACGACCCACC
GAAGCAAAAGAAAAGTGATGCAGAACAACACGATCCTGGAATCTTTCGCT
GGATTATGACTTTTCCGTAAATGGCGACAATATGTACTTAAGTAATCCCA
CGTGCTGCCAGGGCTCACCCCGCTCTCTCAGCCAAATCTCGAGTCGAATT
GTGCTATTTTGAGCGTACAGGGATGAATGTTGCCCAAAATAGTATCCAGT
TTCAAACTGTCCTCTATTTAGACACACGGTCGAAACAACCCCTCACTATG
CGATGGAAAAACTGCGCTATGGGGCACAACGTTCAGCGAAAGATATGCCC
ACAGGACCAAACAGTACGAAATAGCGAAATAGGACCCGCCTAGGTGTTTT
TAGCAATCCTACTGATAATATCCGCAAAAAACCGGTTGCTAAAAATATAT
TGAAAATAGTACTCGCAAGCTGTATGGTCCTGTTTCCTGTTGTTTGTTCC
TATGGCCATATCTTGCGCTGAACATGTCACGAAAAGAGGGGCGTGTCCCT
AAAATAGAGGGCAATTTGAAACTGTACACCAAATTGCACAAAATTCGCTC
CTGCCCTCTCAAAATAGCCCCGTTCGATTAGAGACTTGACAGAGAGTGGT
GTGAGCCCTAGCAGCACATGGTTCAATTTTCAGTTTGCCGCGGTTCGTTT
ACGCGTCGTTTATAGCCACAAATACTTGAGGATCGAATCCTTTAATAAAT
ATATTAGTTGTCATTTCCCAGCCAAATAGAACAAAACTGATCGAGTGTAG
CAGTGCACACATTACACCAATACACCAGGCTCTGCACAGGAAAATGAAGC
AAGTCAAGAAAATGTGCGTATGTGCACTAAATGTCTTGCTCTCTCATCTA
ATTAACTTACCAACCAAAAAAAGCCCCCATGTGCAACATACTTGGTCTGG
ATTTCGCCTTGTCGGACAGGCAACGGAGCTGAACGACAGCATCAAAGAAA
TGCATACGTTCCTGCTGCAGCATTTTCACGACTACATCGACCTGCACCAC
TCGCTGCCTTCTCAGGTAAAAGTATCCACATCTGCTCAACTTGTATTTAT
GCCACCTTTGACGGTCTCTTCGATGGAGGAAAGACGCAACTACGGGGTAA
ATTAATCTATCCCCTATCTAAGTATCATGAAGTCATATCGTGCATCGTAT
TCTTCAGTTCTGCTTATGTCTTGAAAAAGTTGCGTATTTTCAAACAACCA
CTTTTTCTTTTTTTTTTCAAAGTAACGGTCACCCCCCGCGCTTCGCAGAA
ATGACCGAGCGACCGAGCATGGCCAATCATTCTGATAGGAACAATGCTTC
TTTGTGTCCGATGGGTACGCTCTGCCCCTAATAGCTTCACCATGCCAAAA
ACATTCTACGTCGTTTTTCGATGAACTTTTTCTTTGATCGGAACTCTCAG
CATGGACCCTACCCCTGACTGATTCAATTTTACTCATTAGCGTTTATAAC
TGCAAATTAAAGTCAGCTTCATAACCTCAGCATATTGGGGTTATCATGTA
AGGTTATCCCACCCCTCGCCGATCGCGCGCGGGCACCAACCTTCCTCTCC
CCATCACAGCGATCTGTCATGTCGGACGAGGATAAAGATATCATCGATCT
CGAAGTGACCTCCTTTATGACAGCTTGCGCCGCCGGCGTTGACGCGCTCA
AGGCCTTGCTTCAGAGAGAAAGACTAAGGAGGCTGGAGGCGTCCGCCAGC
AACGGTGGTGTCGGGAATGGTGCAGGCATCGATAATGGAGGCGTCGCCGG
GGGTGGGATGCGCCCGGGGTCAAGACCCGCACACGAAAACGTGGCGGTTA
CATTTCTATTCGAAAGGCTCAAGGCGGTCACCGAAGTGGCAGAGACGATG
CAGGTGTGGGTGGGTAGGGTGGAGGTGGCAGTGGCGGCGGTAGGGGAATG
GGTATGCGATTATGTTGTACGTTGTGCTGTCTGTAGAGCAGATTTTGTTT
TGATAACGAACATAGAGTCAGGAAATTCGTGTTTTGTGTGGATAGAGAGA
GATACTGTTCAAAGCACAGCATATTCTTCTCTGGGCTTTATTTTAGCAAG
CTTTGATATTGTGATGTCATGTACATTCTCATAAATCCGATCAGATGTTT
TTATAATTTACGCAAAATTCTTCGTAATCTTGTTTTTTGTTTTTTTTCGT
ATTTCCGTTATTCCTCCATTCCACATACAAGCACATGAGCCTTCCTCCCC
CCCCCCTCCTCCTCCTCTGACCGCCTTTTCTTCCTCCCACCAAGACCGAA
CGGAACAAACGAACCGTGGAACAAAAAGCACGCTTCTACGCTGGTCCCGC
CACGAGATCGCGCACTGCTTCCGAAGCCGCGGCAGCAGCGACGCCCGCTA
GTGCCATCGCCGCAACCGGGGACGTTTGGCGACCAACCCCTGAAGAACTC
GAAGAGGAACGCCTCTTCGAAGAATCTTTGATGCGCCCGTCCCTCGGTAT
CGCGGAGCGACCAAACAGCGCCAAGGTGCTCGGGACGGGTCACAGTGGCG
TGATGGTACCACCCGGGGCGGCAGAAGCAACAACGCCTTCTCCGATTTCA
ACCTCTACTCGCGAGTCGTCATCGTTGTCATTATCATCGTCACGACCACA
GCCAGCGTTGGAGTCGCTTCCCCACGCAGCAATCTCGGCGTTATCTACGA
CGGGATTTGTGGGGATGAATTCAGGTAGTGCTGCCCTAGATCGTCGACGA
CAGCCGCTAAACAATGATGGCAGTGCCGCTTTTGACGAGAGGGCGTCTGA
GGCTGCTGCTGAGCGGGGGCGGGGGCGGGAAGACGGGCGGCGATATAGGG
GGGGGGGGGTTGGGGGGAGGGGACTAGGGACATGGGGAGATGATGGGGCG
GAGAACTCTGGTGGTCCTTTGGTGTCGTCCGATGCGCTGCAGGCAGAAAA
TGCTGATCTTGTGGCAAGATATCAGAACGAACTGGATGATGCTAGACTGG
TGGAAACCAAGATGTCAGAGGTGAACTATTTATACTGAAAGAGCGGCCGC
CGGGAAGCTGTAGTTGATTTCGGGCTTATCTTTGGCAACGTGAGAAACAG
CACCTAGCGTCGTGTGTATTTGCACGAGTAGATGCGAACACGTGGGCCGA
TGTAAGCACGACATGGATCAAGGATTTTACTGGTTATTGCTTATATTTAG
TATTTAGGGTGGAGGTGATGAAGTTGCTCAACTCTTGAAATAGTCCGGGT
GCGGGCTATAGGTCTCGCCCGCAAAATTCAGGGAAAACAGGAGAAGTAAG
AGGGAACTTGCTTGAATAGGTGTAATTCGTTTTTTGAAAACGAGGCCAAA
ACGTGTCCCGAGCAAAATTGCACATTACCACCAGTACGCCAGCTGTTGTG
GTAGGGGAAACTAGCTCCCGCTTTCGCATTTTCGATTTGTTCGCGGGAAG
TGAACGTGAAGTTGTCACTTGGTCGTGCTGCGTATCGAGTTTTCACCACA
TCGTATTGGGCGCTTGTGTGTCTGCCACAATAGGCATAAGTATAGATGTA
GCTACCCTCGAGTTTGTGCTTTTTTTTATGTCTTTGTTTCGTTCGTGCGG
GTGTTTCAGGGTGGGCCTGGTCCTTGAGTACTTCTTTGTGACCAGGTGCG
GATCACAGTAACTGTTGCGTGTACCCAAGTAGCAGATTGGATCCACTGCT
GACTTTGTGTAAGAAAAGAAATGCTCAATTTTCTATTGCAGACGTTCACC
TGTTGTGCCTGCGTTTGCACACAAAGCCGGAAGTCAGGTATTGTTGGCAA
TTCGTTTGGCCAAGTATAATGATATTGCTGATGGACATGTCGGGACATTG
TTCCTCTCTCCTCCATACGCGTGTGCAAAAAAAAAATGCCACACAGGTGG
ATGTTGCCAAAGGCAGACTTATGGACAGAATCGCGGTGTGGGCGAGAGGT
TCCCCACTAGAGCTACTAAAGCGTTAGTAAGCCATCCAAATACCCCTTCG
TTTTGTACCTGCTGTTTCATCTCTAAATTTCACAGATCTCTGGCCTCATG
GGCCTCTTCGCATCCAAGGTGGTGGAACAGCAGGGAGGTATGGAGCATGT
CTTCGACGCAGCGGTCTCGGCGAATGACAAGCTTGTCAGTGGTGGGCAGC
ACCTCGAGAAAGCGGTGGAGCGGGGCGGCGCATTCCGCATGTTCTACTCG
TGGTTCATGATCGGAGCCTCTTTCTGCCTCCTGTTCCTGCATTTCTACAG
GACGTGACTAACAGCGGAAATTGAGAAGCAGTCCCAAACTCCGGGACTTT
TTTTTGTATCGGGAATGGTTGATCCAGCACTTCTAATCAATCGAGTTCCT
GTGTATAGCACACGTGCTGGAAAATGACCATGGTGTTACACGGAGGAATG
ACAATACCAACCGAACCGGGGTGGCGCCTACCCCGCAGAGGAATAAATAA
CTCTGTTCTATTAAAGGAAATGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4072:1671..6795-

>mRNA_H-paniculata_contig4072.10521.1 ID=mRNA_H-paniculata_contig4072.10521.1|Name=mRNA_H-paniculata_contig4072.10521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3078bp|location=Sequence derived from alignment at H-paniculata_contig4072:1671..6795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAGCGCAGCGATAGACCTTACCAAGGAATGGCGTGCTCTCGTAGG
CGTTGTCCGGGTTCAACTCTCATCTTCCACGTCGGGGGCTAGTGGCCGCA
GTACTGGAGTATTGTGGGGAGTGTCCTCCGCTGAAGCTGCTGCTACTGCT
GCTGAGTTTGCTTCGCCATGGAGAACTCCGTTGACTCCTTTCATGCAGCA
GATGTCGAGCGCAGCGATAGACCTTACCAAGGAATGGCGTGCTCTCGTAG
GCGTTGTCCGGGTTCAACTCTCATCTTCCACGTCGGGGGCTAGTGGCCGC
AGTACTGGAGTATTGTGGGGAGTGTCCTCCGCTGAAGCTGCTGCTACTGC
TGCTGAGTTTGCTTCGCCATGGAGAACTCCGTTGACTCCTTTCATGCAGC
AGGCAACGGAGCTGAACGACAGCATCAAAGAAATGCATACGTTCCTGCTG
CAGCATTTTCACGACTACATCGACCTGCACCACTCGCTGCCTTCTCAGGC
AACGGAGCTGAACGACAGCATCAAAGAAATGCATACGTTCCTGCTGCAGC
ATTTTCACGACTACATCGACCTGCACCACTCGCTGCCTTCTCAGCGATCT
GTCATGTCGGACGAGGATAAAGATATCATCGATCTCGAAGTGACCTCCTT
TATGACAGCTTGCGCCGCCGGCGTTGACGCGCTCAAGGCCTTGCTTCAGA
GAGAAAGACTAAGGAGGCTGGAGGCGTCCGCCAGCAACGGTGGTGTCGGG
AATGGTGCAGGCATCGATAATGGAGGCGTCGCCGGGGGTGGGATGCGCCC
GGGGTCAAGACCCGCACACGAAAACGTGGCGGTTACATTTCTATTCGAAA
GGCTCAAGGCGGTCACCGAAGTGGCAGAGACGATGCAGCGATCTGTCATG
TCGGACGAGGATAAAGATATCATCGATCTCGAAGTGACCTCCTTTATGAC
AGCTTGCGCCGCCGGCGTTGACGCGCTCAAGGCCTTGCTTCAGAGAGAAA
GACTAAGGAGGCTGGAGGCGTCCGCCAGCAACGGTGGTGTCGGGAATGGT
GCAGGCATCGATAATGGAGGCGTCGCCGGGGGTGGGATGCGCCCGGGGTC
AAGACCCGCACACGAAAACGTGGCGGTTACATTTCTATTCGAAAGGCTCA
AGGCGGTCACCGAAGTGGCAGAGACGATGCAGACCGAACGGAACAAACGA
ACCGTGGAACAAAAAGCACGCTTCTACGCTGGTCCCGCCACGAGATCGCG
CACTGCTTCCGAAGCCGCGGCAGCAGCGACGCCCGCTAGTGCCATCGCCG
CAACCGGGGACGTTTGGCGACCAACCCCTGAAGAACTCGAAGAGGAACGC
CTCTTCGAAGAATCTTTGATGCGCCCGTCCCTCGGTATCGCGGAGCGACC
AAACAGCGCCAAGGTGCTCGGGACGGGTCACAGTGGCGTGATGGTACCAC
CCGGGGCGGCAGAAGCAACAACGCCTTCTCCGATTTCAACCTCTACTCGC
GAGTCGTCATCGTTGTCATTATCATCGTCACGACCACAGCCAGCGTTGGA
GTCGCTTCCCCACGCAGCAATCTCGGCGTTATCTACGACGGGATTTGTGG
GGATGAATTCAGGTAGTGCTGCCCTAGATCGTCGACGACAGCCGCTAAAC
AATGATGGCAGTGCCGCTTTTGACGAGAGGGCGTCTGAGGCTGCTGCTGA
GCGGGGGCGGGGGCGGGAAGACGGGCGGCGATATAGGGGGGGGGGGGTTG
GGGGGAGGGGACTAGGGACATGGGGAGATGATGGGGCGGAGAACTCTGGT
GGTCCTTTGGTGTCGTCCGATGCGCTGCAGGCAGAAAATGCTGATCTTGT
GGCAAGATATCAGAACGAACTGGATGATGCTAGACTGGTGGAAACCAAGA
TGTCAGAGACCGAACGGAACAAACGAACCGTGGAACAAAAAGCACGCTTC
TACGCTGGTCCCGCCACGAGATCGCGCACTGCTTCCGAAGCCGCGGCAGC
AGCGACGCCCGCTAGTGCCATCGCCGCAACCGGGGACGTTTGGCGACCAA
CCCCTGAAGAACTCGAAGAGGAACGCCTCTTCGAAGAATCTTTGATGCGC
CCGTCCCTCGGTATCGCGGAGCGACCAAACAGCGCCAAGGTGCTCGGGAC
GGGTCACAGTGGCGTGATGGTACCACCCGGGGCGGCAGAAGCAACAACGC
CTTCTCCGATTTCAACCTCTACTCGCGAGTCGTCATCGTTGTCATTATCA
TCGTCACGACCACAGCCAGCGTTGGAGTCGCTTCCCCACGCAGCAATCTC
GGCGTTATCTACGACGGGATTTGTGGGGATGAATTCAGGTAGTGCTGCCC
TAGATCGTCGACGACAGCCGCTAAACAATGATGGCAGTGCCGCTTTTGAC
GAGAGGGCGTCTGAGGCTGCTGCTGAGCGGGGGCGGGGGCGGGAAGACGG
GCGGCGATATAGGGGGGGGGGGGTTGGGGGGAGGGGACTAGGGACATGGG
GAGATGATGGGGCGGAGAACTCTGGTGGTCCTTTGGTGTCGTCCGATGCG
CTGCAGGCAGAAAATGCTGATCTTGTGGCAAGATATCAGAACGAACTGGA
TGATGCTAGACTGGTGGAAACCAAGATGTCAGAGATCTCTGGCCTCATGG
GCCTCTTCGCATCCAAGGTGGTGGAACAGCAGGGAGGTATGGAGCATGTC
TTCGACGCAGCGGTCTCGGCGAATGACAAGCTTGTCAGTGGTGGGCAGCA
CCTCGAGAAAGCGGTGGAGCGGGGCGGCGCATTCCGCATGTTCTACTCGT
GGTTCATGATCGGAGCCTCTTTCTGCCTCCTGTTCCTGCATTTCTACAGG
ACGTGAATCTCTGGCCTCATGGGCCTCTTCGCATCCAAGGTGGTGGAACA
GCAGGGAGGTATGGAGCATGTCTTCGACGCAGCGGTCTCGGCGAATGACA
AGCTTGTCAGTGGTGGGCAGCACCTCGAGAAAGCGGTGGAGCGGGGCGGC
GCATTCCGCATGTTCTACTCGTGGTTCATGATCGGAGCCTCTTTCTGCCT
CCTGTTCCTGCATTTCTACAGGACGTGA
back to top