mRNA_H-paniculata_contig4063.10498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4063.10498.1
Unique NamemRNA_H-paniculata_contig4063.10498.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4063.10498.1 vs. uniprot
Match: D7G444_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G444_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 2.920e-85
Identity = 130/158 (82.28%), Postives = 141/158 (89.24%), Query Frame = 1 
Query:    1 MKTVTETYADYFRDLHGWLSEYFFAKLARACYEKTLKLLIQFFTKETMPGSGTTMMEFLAQAGLRETGAMDDVAQAARDIATVLEADDPEMDRLQGSMVQAAIKRLVKEFKSKGSEVVMAVVGMQGRWNSEETRARREFVERLARTCGNFGENDVSTR 474
            MKT+TETYADYFRDLHGWLSEYFFAKLARAC+EK++KLLIQFFT E MPGS TTM E+LAQAG+RE GAMDDVAQAARD ATVLEADD  MDRLQGS+VQAAIKRLV+EFKSKG++VVM VVGMQGR   EE R RREFVERLA TCG F E+DVSTR
Sbjct:    1 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKLLIQFFTNEAMPGSSTTMKEYLAQAGIREAGAMDDVAQAARDAATVLEADDDGMDRLQGSLVQAAIKRLVREFKSKGTDVVMMVVGMQGRRGVEEMRQRREFVERLANTCGRFTESDVSTR 158
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BLAST of mRNA_H-paniculata_contig4063.10498.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.440e-74
Identity = 131/191 (68.59%), Postives = 142/191 (74.35%), Query Frame = 1 
Query:    1 MKTVTETYADYFRDLHGWLSEYFFAKLARACYEKTLK---------------------------------LLIQFFTKETMPGSGTTMMEFLAQAGLRETGAMDDVAQAARDIATVLEADDPEMDRLQGSMVQAAIKRLVKEFKSKGSEVVMAVVGMQGRWNSEETRARREFVERLARTCGNFGENDVSTR 474
            MKT+TETYADYFRDLHGWLSEYFFAKLARAC+EK++K                                 LLIQFFT ETMPGS TTM E+LAQAG+RE GAMDDVAQAARD ATVLEADD  MDRLQGS+VQAAIKRLV+EFKSKG++VVM VVGMQGR   EE R RREFVERLA TCG F E+DVSTR
Sbjct:  394 MKTITETYADYFRDLHGWLSEYFFAKLARACFEKSVKVYVESLLIGDASGARHEFSSPGVAAQRIRGDIQLLIQFFTNETMPGSSTTMKEYLAQAGIREVGAMDDVAQAARDAATVLEADDDGMDRLQGSLVQAAIKRLVREFKSKGTDVVMMVVGMQGRRGVEEMRQRREFVERLANTCGRFTESDVSTR 584
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BLAST of mRNA_H-paniculata_contig4063.10498.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.890e-30
Identity = 74/189 (39.15%), Postives = 104/189 (55.03%), Query Frame = 1 
Query:    1 MKTVTETYADYFRDLHGWLSEYFFAKLARACYEKTLKLLIQ-------------------------------FFTKETMPGSGTTMMEFLAQAGLRETGAMDDVAQAARDIATVLEADDPEMDRLQGSMVQAAIKRLVKEFKSKGSEVVMAVVGMQGRWNSEETRARREFVERLARTCGNFGENDVSTR 474
            +K+V ET+ D+FRDL  WL ++FF KL R+  +  +K+ ++                               FF  E MP  G T+ E L QAG+   GA+    Q   D+  VL A+   +D LQ S  QA+IKRLV EFK +G +++M ++ +QG+W SEE  ARREF+ERL +TCG FG  +VS R
Sbjct:  555 VKSVVETHGDFFRDLELWLPDFFFVKLVRSSLDLVVKMYVEQLAENPAQRKPFVTHHEAMNQIDDDVALMCAFFQDEKMPALGLTLGEILEQAGITGAGAVQVQFQMVYDMLAVLAANT--LDLLQVSTTQASIKRLVVEFKGQGLDLLMHLIALQGKWTSEERAARREFLERLVKTCGTFG-TEVSAR 740
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4063.10498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G444_ECTSI2.920e-8582.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE3.440e-7468.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA2.890e-3039.15Exocyst complex component Sec6-domain-containing p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4063contigH-paniculata_contig4063:2782..7869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Exons4
Model size474
Cds size474
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_000630.1
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4063.10498.1prot_H-paniculata_contig4063.10498.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4063 2782..7869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.9979641-CDS-H-paniculata_contig4063:2781..28921622930242.9979641-CDS-H-paniculata_contig4063:2781..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 2782..2892 +
1691481206.9975355-CDS-H-paniculata_contig4063:2781..28921691481206.9975355-CDS-H-paniculata_contig4063:2781..2892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 2782..2892 +
1622930243.0121317-CDS-H-paniculata_contig4063:5069..52131622930243.0121317-CDS-H-paniculata_contig4063:5069..5213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 5070..5213 +
1691481207.006774-CDS-H-paniculata_contig4063:5069..52131691481207.006774-CDS-H-paniculata_contig4063:5069..5213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 5070..5213 +
1622930243.0307152-CDS-H-paniculata_contig4063:6289..63731622930243.0307152-CDS-H-paniculata_contig4063:6289..6373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 6290..6373 +
1691481207.015137-CDS-H-paniculata_contig4063:6289..63731691481207.015137-CDS-H-paniculata_contig4063:6289..6373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 6290..6373 +
1622930243.0544715-CDS-H-paniculata_contig4063:7734..78691622930243.0544715-CDS-H-paniculata_contig4063:7734..7869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 7735..7869 +
1691481207.0279694-CDS-H-paniculata_contig4063:7734..78691691481207.0279694-CDS-H-paniculata_contig4063:7734..7869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4063 7735..7869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4063.10498.1

>prot_H-paniculata_contig4063.10498.1 ID=prot_H-paniculata_contig4063.10498.1|Name=mRNA_H-paniculata_contig4063.10498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MKTVTETYADYFRDLHGWLSEYFFAKLARACYEKTLKLLIQFFTKETMPG
SGTTMMEFLAQAGLRETGAMDDVAQAARDIATVLEADDPEMDRLQGSMVQ
AAIKRLVKEFKSKGSEVVMAVVGMQGRWNSEETRARREFVERLARTCGNF
GENDVSTR
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mRNA from alignment at H-paniculata_contig4063:2782..7869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4063.10498.1 ID=mRNA_H-paniculata_contig4063.10498.1|Name=mRNA_H-paniculata_contig4063.10498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5088bp|location=Sequence derived from alignment at H-paniculata_contig4063:2782..7869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACGGTTACCGAGACATACGCCGACTACTTTCGAGATCTCCACGG
CTGGCTATCTGAATATTTCTTTGCCAAGCTCGCTAGGGCTTGCTACGAGA
AGACCCTCAAGGTGATCATTCGTTTTTTTATTTTTGTGATCCCCAGGAGA
CACTCCTACAGGCTTCACTACCCATTTGGGCTTTTGTCTGTTGAGTGACG
TTTCGCGTTTTTGTGTGTTGTGTGTTGTGTATTAGTATGTGCTTTTCTGT
GCTTTTATCTCTGTGGTGTACATATTTTAGCGTCCGCGGGACTACCCGGC
TAGTGCTACCTGCAGGATAGACCCGCTACTGCTAGAGGTAGGTGTGGCGT
GTGTCAGGTTTTTCCTACATGTCTGATTTTGCTTCTGGGAGCTTTTGTTC
TCTGACTGTGCGTCTGAGAAACTGGATCCCAGTTCAGGAATGAAAACGTG
CTGCATGTGTAGTAGTATCTATAGAGCTATTGCACAATGTTCGAAAGCAA
GGATTGATTATAACCGTAAATAAGCCCTTTGCTAGCGCACCTTCCCTTTG
CTGGCGTACCAGTGCGATCTGCAACAGCGCGTGTTTTTTTTTTTGTGACG
TCCCGCCCGCGTCGTAAACGCATCGGTGCGTTTTAGCAAAAAAGATGCGC
CAAGATACGACCGACCTGTAGGGGGAAAGCACCGCCGGTGCATTCTCGAG
AATTTAATTTCGAGGTCAATCTGATCACAGTCGTTGTTGTTGTGTTTTCT
TGATGCCTTGAACTCATTTGAGTGGCCACGAAGAGCCAAAAGGAGGGAAG
GTGCGTTGAGTGTCGCAAGATAACCCACCGAAATAATACACGGAACACGA
CGGGAACCTTGGCTGACTGCTCGCAGCGAACACGTACCATTTTGTTTCTA
TTCGCACCCGGTGTATCTTCGCACCCCCAATGTTGCTCTGAATTTTTTCA
ATATGTGCACCATCTCCCCTTTGCCGGTGCCACCGGATGCGATCTTTAAC
AGGTAGTCTTATTTTCCTTCACAATCGTTGCGCCAGCTAAGGGTTTGCGG
TTATAGGGATTGATTATTACAAGTATTAGCAGCACACGTGAGACAGAAAA
CAAAACCATATCATATATATATATATATATATATATATACATATACACGA
ATTTAGCTTGCAAGGCTACAAGAGCCAGGCGTTAACCTCTGCGGCTTTAT
TTATATGTTTGTTGGTGGGGAATTTTTATGCTCGGTGAAAAGTTACGTAC
GTCCGCTGCGAGGATTTGTTTTTTTGCCATCGTAATTTCCTTTTTATTTT
TCTTTGTTATAGATTCAGTATTTTATTTGCGTGGCTTATTATGTACGTCC
TTGAATTCGTCTTCATGTGTTGATTTTCATACAGATGTATGTCGAGGCGT
TACTGGGAGTTGACAAGGCTGGGAACCGACGTCAGTTCGCATCGCCGGTG
ATGGCTGCCCAGCGCATCCGAGCAGACGTCCAGGTAGACAAGAAGAGAGA
CAAAAGAGGGAAGACAAAATCCGGAAAGACAGTTCACGAGAAGATTCTAT
TTTGCCGAAGAACATTCCGAAGATATTGGAAGTCAGTTTGCTATTTCCTG
CTGACATGTTTTGTTTTTTTCCAATTTTTGAACGCCAAAATAAGTCGGTG
TGTGACTGTCTATTTTTTTTTTTCAAAACTTTGGTGTCATGGTGTAGATC
CTGTTCTACCACCCGTATTGGTCATGATCTAATTTTGCTGATAAGACTAC
ACGACTGAACTTTAAGGTCAGCTGTCTCCGCCCCCCTAAATCTTTGTGTA
ATTAGTCATTACTCAGCATATCTCCAGTTTTGAAACAATGGTTGGTTGGT
ATATATGGGCGTGTTTTCTTATTGTACTTTGTGCGGCACTGTTTCGTACC
GTATTGTATTCCCATGGTGTTGGCAATGTACGCGGTCTGTCTGTCTGTCT
GTCTGTCTGTCTTGTTGGAGTCGTCCTTGGCAAGGGGCTTTCGTACATGC
TGCTGCTGTCGCTGTTCTGGTGTAGTAGTTGATATGTAGACTTGTTGCTC
CTGCTTGGTCCAGGTCACTCACTATTTCGTCCTCTTTTAGACTGCGGTAT
TTCCCTGCCCCCTGCTGTGTTGAGGTAGACAGGGAAGGTAGGAAAGATGG
ATTGGCTGTGATCGGAAATCGCTCTGTCAGGAACAAAGCTCTGCCCTCCC
GAGGACGCGCGGTCAACGGTATAATAACATCGACGTGCAAAACATGGAAC
GCTTCCCGCCCCCCGCCGCAACAACGTCCAACCAACAGCTCCTTATCCAG
TTTTTCACGAAAGAGACCATGCCCGGATCGGGTACGACGATGATGGAGTT
CCTAGCGCAAGCGGGACTACGCGAGACCGGAGCTATGGATGATGTGGCAC
AGGCCGCCCGAGACATCGCTACGGTTTTGGAGGTGCGTTCGGTACCGTAC
CATAGTCTACCTTTCAGGGTAACAACGCTAGAAACTCGTGTTTCGTTCGG
ATGAGGCTCATAACCTGCCAATTATGTTTTGTATCTTCACCTAGTGCATG
TCTCTAATGGAATCTCCGATATGAGGTACTTCTTCTCTGAAGATCCTGGC
TTCCACACGTACGAGCGTTTACTTGATGTACCCTCTGTTTTTAGGGTGAG
GATTAGGAAGGGATCCTGGAGAGATTGGGGTCCAAAGCGGTGATGAGAGC
TCTAGTTTCGCACGTAGACACAATATCTGTGAAGATTCGTTCCTAGAAAT
GAATTTGAGTACAGAACTGAACATCTGTTTCGAGTCACACAGAGCTGTCG
GTGTTTATTTTTTCTCTTGTTGTCGACTTTTTCATCATCACATTACAGTA
TTTCTTACCTTGTCGACTCCCGTTGGTCATGAGGTATCACTCCCATTATC
ATGTAGGCACAATATCCGGGAAGATTCGTTTCTAGAAATTACTCGAATTT
AGAGTTAAAAGTATGTTCCGAAACAACAATCAACAGATATATACACCGAG
TGTATATATATATATATTATTTTTTTCTCAACCTCATCATGAGGTATGAC
TGGCCCCAAAAAATGCTCCCTCCATCAAATCGAAACTCGCAATAACACAG
ATACCCAGCCATAGTGCTGAGAATTCAACGCGTCTAGAATAGACTGGCTC
TCGAGGGGGACACCGTCTGTTCGAAGGATTTGTTCTGAATCTTGGGACGT
GCAGTAGTGCGGACTACGCAGTTGGATTTCGCTCTGTAGTTGATGAACTA
ACCAACTGGTCATCTTCCAGGGTCGCAAGTAGCTATAAACGCTGTTCGGA
TTATGTGACAGAACATCACTGGTTGTATAAGGGACCGGGGTTCAGGAACC
CTCAGAACGTCAGAAACGTTCCTGCTCTTAACATCATTTCCCAATTGAAG
TGCTTCATGGTACAGTAGCTTGGAGTCATACTTTAGTACTTCTTTGATGA
CTGATGTGTGTATATTCTCGTCTTTTTTTGATCCGCCCGTCTCACCTATC
TCTATCAGGCGGACGATCCCGAGATGGATCGACTACAGGGTAGCATGGTG
CAGGCTGCGATAAAACGCCTCGTCAAGGAGTTCAAGTCCAAGGTATGAGG
GGGGGCTGTATGATGAATTTTATACTTGTAGTACAGATGTCGTAAATCTG
TTCAGTAAGTTTATTGCTGGTTAGGTTGGTTAGACCATGGTTTTCACCCG
TGAAAAACGCTTGTTAGATAAGAGTGCATCTGTGTGGGAAATTAGTCCGA
AGAGTGAATGTGATTCATCAAGAATGCATCGAAGATGACAGTTGACACTT
TCGAAAATTGTTCCCTTGAACAGTCAATTTTTGCCGCTTTTTTTACTAAG
CTTTTAGGAGCCGATGATGCCCTAATGAGCTAGGTGTGCATGGGTTGTAT
TATCATTGTGGCCATTACGGAGCAAGGTTGGTGGTCTTTTTCAGTCCTCA
CTCTATGCTGAATCCCATGAGCTGGAAGAATGCCCAAGTGGGCAAAGAAA
TCTATTAATTTTCAGACATGAGATAAGTTGACCAGCCGCCTGCTGTGGAG
GTGGTTAGTCGTTGTGTAGACGCACTCGTCGTTATTTGCGACTACTCGCT
ACGATATCTGTCTATGGTCCATGGCACTCCGGACACCAGTAGACAAAGGC
TCAAGACGTTGTCGATTAATACACGTGTCCCCCTATCTATGTTTCCATCT
CGTGATTCCCTACAGCTCCCCAAACTTCTGAAGCTCTCCTGAGGACGTGT
GGTCCATGGTTGAATAGTTATGGCATGCGACAACATGAGTATGCCGCCTC
CCTAATTGATCGGTTGGTGGATTCCGCCACTCCACATTGTGTTTGGTCAC
TTCAACAATGACCAAATATACTATCCTACTTTGATTTATGCTCAATGACA
TGTTTTCTAGGTGGTACTTGGAAAGTATTCGCGACAAAATGGAAGAACGT
TCGCCTCAGTTTCAGAAGGTGCAGGATGAATGGCACACGTGAAGGAAGTG
TTGAGCCCCTTTTAATTCCTTCTGTTGCTGTTCAGAGCGGTCAGTCGTAG
ATAGTACTTCCGGCACATCGGCCGAATAATCGTGCTCATGCTGAACTCAC
TAACCTGTAGAACATTTTTTTTTTTTTTTTTTCCTTAACGTTGGAAAAAT
TCGGAATTGTTTTCATGGGATGACGACACTATTGAAGTATTCGTTCAAGC
CGGAGTGAAATATTTTCGAACGGCACACCCGTTCTGCTTGTCGATCCTGT
CTCGGGTGTGGAAGTTGTATTTGATAACAGAGGCTGTACGTGTTGTTGTC
GCTGTCGTGGTGTGCAATGGTTTATGTGTACCCCATTTCATTGCTCTAAT
TTTGCTGAATTAGTCTACACCACTGACGTTTGAAGTCAGTTGCACAAACT
CTCCCCCCTCACCCCCGTTCGCCACCGACTGGCTGTCATCCGGTGTGTAA
CAGGGTTCGGAAGTAGTTATGGCGGTGGTCGGAATGCAGGGGCGATGGAA
CAGTGAGGAGACGAGAGCGAGACGGGAATTCGTGGAACGGCTCGCGAGAA
CGTGCGGAAATTTTGGGGAAAATGACGTCTCGACAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4063:2782..7869+

>mRNA_H-paniculata_contig4063.10498.1 ID=mRNA_H-paniculata_contig4063.10498.1|Name=mRNA_H-paniculata_contig4063.10498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig4063:2782..7869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACGGTTACCGAGACATACGCCGACTACTTTCGAGATCTCCACGG
CTGGCTATCTGAATATTTCTTTGCCAAGCTCGCTAGGGCTTGCTACGAGA
AGACCCTCAAGATGAAAACGGTTACCGAGACATACGCCGACTACTTTCGA
GATCTCCACGGCTGGCTATCTGAATATTTCTTTGCCAAGCTCGCTAGGGC
TTGCTACGAGAAGACCCTCAAGCTCCTTATCCAGTTTTTCACGAAAGAGA
CCATGCCCGGATCGGGTACGACGATGATGGAGTTCCTAGCGCAAGCGGGA
CTACGCGAGACCGGAGCTATGGATGATGTGGCACAGGCCGCCCGAGACAT
CGCTACGGTTTTGGAGCTCCTTATCCAGTTTTTCACGAAAGAGACCATGC
CCGGATCGGGTACGACGATGATGGAGTTCCTAGCGCAAGCGGGACTACGC
GAGACCGGAGCTATGGATGATGTGGCACAGGCCGCCCGAGACATCGCTAC
GGTTTTGGAGGCGGACGATCCCGAGATGGATCGACTACAGGGTAGCATGG
TGCAGGCTGCGATAAAACGCCTCGTCAAGGAGTTCAAGTCCAAGGCGGAC
GATCCCGAGATGGATCGACTACAGGGTAGCATGGTGCAGGCTGCGATAAA
ACGCCTCGTCAAGGAGTTCAAGTCCAAGGGTTCGGAAGTAGTTATGGCGG
TGGTCGGAATGCAGGGGCGATGGAACAGTGAGGAGACGAGAGCGAGACGG
GAATTCGTGGAACGGCTCGCGAGAACGTGCGGAAATTTTGGGGAAAATGA
CGTCTCGACAAGGGGTTCGGAAGTAGTTATGGCGGTGGTCGGAATGCAGG
GGCGATGGAACAGTGAGGAGACGAGAGCGAGACGGGAATTCGTGGAACGG
CTCGCGAGAACGTGCGGAAATTTTGGGGAAAATGACGTCTCGACAAGG
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