mRNA_H-paniculata_contig4061.10496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4061.10496.1
Unique NamemRNA_H-paniculata_contig4061.10496.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.220e-7
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 3 
Query:    3 WRFGVLVRVDCDHEESR----LRLDYSTDKKELVVAVWGDLTKAVAWAIICCVYTVVRKMTLQFPGLRWDASLGCPDH 224
            WR+GVLV       + R    +  +YS+   EL   ++GD++ +  W  +  V + V  M + FPGLRW+ SL CP H
Sbjct:  613 WRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQH 690
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BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Match: A0A6H5KM56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM56_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.490e-7
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 3 
Query:    3 WRFGVLVRVDCDHEESR----LRLDYSTDKKELVVAVWGDLTKAVAWAIICCVYTVVRKMTLQFPGLRWDASLGCPDH 224
            W++GVLV       E R      L+YS+   EL   ++GD++    W  +  V + V  M + FPGLRW+ SL CP H
Sbjct:  414 WQYGVLVHGGLGDFEGREIFATVLEYSSTDNELSARIFGDISTPAPWTALSYVMSAVILMLVDFPGLRWEGSLKCPQH 491
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BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.540e-7
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 3 
Query:    3 WRFGVLVRVDCDH----EESRLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVYTVVRKMTLQFPGLRWDASLGCPDH 224
            WRFGVLV+             L ++YS DK E+ + V+G ++ A  WA +    +V + M  +FPGLRW A+L CP H
Sbjct:  778 WRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQH 855
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BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 9.830e-7
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 3 
Query:    3 WRFGVLVRVDCDH----EESRLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVYTVVRKMTLQFPGLRWDASLGCPDH 224
            WRFGVLV+         +   L ++YS D  E+ + V+G +  A  WA +    +V + M  +FPGLRW ASL CP H
Sbjct:  742 WRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQH 819
[Close]
BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Match: A0A6H5JME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.790e-6
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 3 
Query:    3 WRFGVLVRVDCDHEES----RLRLDYSTDKKELVVAVWGDLTKAVAWAIICCVYTVVRKMTLQFPGLRWDASLGCPDHPKKGISIS 248
            WRFGVLV+ +     +     + ++YS    E+ + V+G++     WA +    + VR M   FPGLRW ASL CP+H K+ + IS
Sbjct:  880 WRFGVLVQGNMGGVTAGKTFAMLVEYSHKGSEIDIKVYGNIATTAPWAALSLGISAVRVMCSAFPGLRWCASLKCPEH-KQDMPIS 964
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4061.10496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZA1_ECTSI2.220e-735.90LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5KM56_9PHAE5.490e-737.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL98_ECTSI5.540e-739.74LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL89_ECTSI9.830e-739.74LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JME6_9PHAE1.790e-637.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4061contigH-paniculata_contig4061:10454..12266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size915
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4061.10496.1prot_H-paniculata_contig4061.10496.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4061 10779..12266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.6781025-UTR-H-paniculata_contig4061:10453..107781622930242.6781025-UTR-H-paniculata_contig4061:10453..10778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4061 10454..10778 +
1691481206.920369-UTR-H-paniculata_contig4061:10453..107781691481206.920369-UTR-H-paniculata_contig4061:10453..10778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4061 10454..10778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.6930783-CDS-H-paniculata_contig4061:10778..110341622930242.6930783-CDS-H-paniculata_contig4061:10778..11034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 10779..11034 +
1691481206.9291136-CDS-H-paniculata_contig4061:10778..110341691481206.9291136-CDS-H-paniculata_contig4061:10778..11034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 10779..11034 +
1622930242.7098293-CDS-H-paniculata_contig4061:11551..116701622930242.7098293-CDS-H-paniculata_contig4061:11551..11670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 11552..11670 +
1691481206.9368892-CDS-H-paniculata_contig4061:11551..116701691481206.9368892-CDS-H-paniculata_contig4061:11551..11670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 11552..11670 +
1622930242.7247646-CDS-H-paniculata_contig4061:12053..122661622930242.7247646-CDS-H-paniculata_contig4061:12053..12266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 12054..12266 +
1691481206.9449413-CDS-H-paniculata_contig4061:12053..122661691481206.9449413-CDS-H-paniculata_contig4061:12053..12266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4061 12054..12266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4061.10496.1

>prot_H-paniculata_contig4061.10496.1 ID=prot_H-paniculata_contig4061.10496.1|Name=mRNA_H-paniculata_contig4061.10496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
MRYFRSVLPYSIPVNSDHGFFPITTFFSSPMVGNCWCSLHTQVQRRGDRL
IDKRNICTTCRMAGKGAGILASELLEVDDINSRNIGQVLQRVVDRVSESQ
RARLNSCGNASSSDSQAPVRKHRTQVHSDADSEVLEIREELRKMQSSMSI
MEEVKETKAMMADVKDVVEKSQKTNTLETKAMMADVKDVVEKSQKT
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mRNA from alignment at H-paniculata_contig4061:10454..12266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4061.10496.1 ID=mRNA_H-paniculata_contig4061.10496.1|Name=mRNA_H-paniculata_contig4061.10496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1813bp|location=Sequence derived from alignment at H-paniculata_contig4061:10454..12266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGGAGGTTCGGTGTTCTTGTCCGTGTAGACTGCGATCACGAGGAATCG
CGTCTAAGGCTTGATTACAGCACGGATAAGAAGGAGCTGGTGGTGGCGGT
TTGGGGAGATCTTACCAAGGCCGTTGCGTGGGCCATCATCTGCTGTGTGT
ATACAGTCGTCCGGAAGATGACCCTGCAATTTCCAGGATTGCGCTGGGAT
GCGTCCTTGGGCTGCCCAGATCACCCTAAAAAGGGCATAAGCATCTCTGA
GGTGCGCGTTATTGTTTCCATGGGTCGACATGGTGTGTACTATTTGAACC
GTCACTCTCGGTCCCACAACAATTAATGAGATATTTTCGTAGTGTTCTTC
CTTATTCAATACCGGTAAACAGCGACCATGGGTTTTTTCCCATAACTACA
TTTTTTTCGTCTCCTATGGTTGGTAATTGTTGGTGCTCGCTTCACACGCA
GGTCCAGAGAAGGGGTGATCGCTTGATAGACAAGCGAAACATCTGTACAA
CTTGCCGCATGGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTT
GAGGTGGACGATATCAACAGCCGTAATATAGGTAACATCCTCATAGGCAA
ACAGCTGTTCCAGCCAAAATCACAACAATTTCTTGTTAATTGAGTGGAAC
TATAGCCAGCATAACAGCGTTGACTTGGTTTTCATGGTGCTGACTCGTCC
GTTATAAAATCACGTAGGACTAGTTGGATAGTGTTCCGATTGGAGAATTT
TGGAATTGGTGGGTGATCTACGCTCTAGCATACGACAGTACGTGTTTCGC
TGCCGGATGTGGGCAGGGAGTGTTGCATGACATACACACTGCACATACGC
TGGCTGTTAGCCCTGTCAGCTGCCCTCTGATGAGCAGCACGAAGGCGCAA
GCTACATATACTGTAGAACATTTCTTTTCGCCGGGGGTGTCGTTTATTTA
CCCGATCGATGAAACTCGTCTCAATGTAACACCGGCGAATGGTTGCTACG
TCAGTTGTAAACCACCCTCTTTCACACTACTTTGGCGTCCATACCTTTCA
GTCAACGCGAACACATGTCACGGATGTCATCCATTTTCGCGCGTCCAGGT
CAAGTACTTCAGCGAGTGGTGGACCGTGTCTCCGAGTCTCAGAGAGCCAG
GCTCAACAGCTGCGGGAATGCCAGCAGCTCAGATTCTCAAGCGCCGGTAA
GGAAGCATCGTACCCAGGTACGTTTTTTGCGTATTCGATGTGCTTCTTCG
AGTGCGGCTGCGAAAGCACGGCGAAACCATTTGCTCTGGTTATTAGTACC
CTGCTAGTAATGAATAAAGGTATGCATGTCGCCTTGGTGGCGAGGAGACT
GTCGAACTCTCTTTTACTAGCCTTTCAAACGAGCGTGGCACGTTTACCTG
ATGAAGGCGGGCTTGAACTGCCATGCCCACTGCCACAATGTTGAATATTT
CACCTGATTGAACACGCTGGGTGTGCCCGCTCAGTACGGTTCAAATAACT
CCTGAAGAAACAAGTCTCTGGTTTCGTTGCTTGACTGGGTCGTTCGCCCC
TCAAGTCGTCTTGTCTGACGTCAGCACTCTCTCGCTCCTGATTATGACAG
GTCCACAGTGATGCAGATAGTGAAGTGTTGGAGATAAGGGAGGAGCTGAG
AAAAATGCAATCTTCCATGTCCATCATGGAAGAAGTCAAGGAGACCAAGG
CAATGATGGCAGACGTCAAGGACGTTGTAGAGAAGTCGCAAAAGACTAAC
ACGTTGGAGACCAAGGCAATGATGGCAGACGTGAAGGACGTTGTAGAGAA
GTCGCAAAAGACT
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Coding sequence (CDS) from alignment at H-paniculata_contig4061:10454..12266+

>mRNA_H-paniculata_contig4061.10496.1 ID=mRNA_H-paniculata_contig4061.10496.1|Name=mRNA_H-paniculata_contig4061.10496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig4061:10454..12266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATATTTTCGTAGTGTTCTTCCTTATTCAATACCGGTAAACAGCGA
CCATGGGTTTTTTCCCATAACTACATTTTTTTCGTCTCCTATGGTTGGTA
ATTGTTGGTGCTCGCTTCACACGCAGGTCCAGAGAAGGGGTGATCGCTTG
ATAGACAAGCGAAACATCTGTACAACTTGCCGCATGGCGGGCAAGGGAGC
TGGGATTCTTGCATCAGAGCTACTTGAGGTGGACGATATCAACAGCCGTA
ATATAGATGAGATATTTTCGTAGTGTTCTTCCTTATTCAATACCGGTAAA
CAGCGACCATGGGTTTTTTCCCATAACTACATTTTTTTCGTCTCCTATGG
TTGGTAATTGTTGGTGCTCGCTTCACACGCAGGTCCAGAGAAGGGGTGAT
CGCTTGATAGACAAGCGAAACATCTGTACAACTTGCCGCATGGCGGGCAA
GGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGGTGGACGATATCAACA
GCCGTAATATAGGTCAAGTACTTCAGCGAGTGGTGGACCGTGTCTCCGAG
TCTCAGAGAGCCAGGCTCAACAGCTGCGGGAATGCCAGCAGCTCAGATTC
TCAAGCGCCGGTAAGGAAGCATCGTACCCAGGTCAAGTACTTCAGCGAGT
GGTGGACCGTGTCTCCGAGTCTCAGAGAGCCAGGCTCAACAGCTGCGGGA
ATGCCAGCAGCTCAGATTCTCAAGCGCCGGTAAGGAAGCATCGTACCCAG
GTCCACAGTGATGCAGATAGTGAAGTGTTGGAGATAAGGGAGGAGCTGAG
AAAAATGCAATCTTCCATGTCCATCATGGAAGAAGTCAAGGAGACCAAGG
CAATGATGGCAGACGTCAAGGACGTTGTAGAGAAGTCGCAAAAGACTAAC
ACGTTGGAGACCAAGGCAATGATGGCAGACGTGAAGGACGTTGTAGAGAA
GTCGCAAAAGACTGTCCACAGTGATGCAGATAGTGAAGTGTTGGAGATAA
GGGAGGAGCTGAGAAAAATGCAATCTTCCATGTCCATCATGGAAGAAGTC
AAGGAGACCAAGGCAATGATGGCAGACGTCAAGGACGTTGTAGAGAAGTC
GCAAAAGACTAACACGTTGGAGACCAAGGCAATGATGGCAGACGTGAAGG
ACGTTGTAGAGAAGTCGCAAAAGACT
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