mRNA_H-paniculata_contig40608.10494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40608.10494.1
Unique NamemRNA_H-paniculata_contig40608.10494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40608.10494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40608contigH-paniculata_contig40608:455..1053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40608.10494.1prot_H-paniculata_contig40608.10494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40608 491..712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.582254-UTR-H-paniculata_contig40608:454..4901622930242.582254-UTR-H-paniculata_contig40608:454..490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40608 455..490 +
1691481206.891328-UTR-H-paniculata_contig40608:454..4901691481206.891328-UTR-H-paniculata_contig40608:454..490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40608 455..490 +
1622930242.6243696-UTR-H-paniculata_contig40608:712..10531622930242.6243696-UTR-H-paniculata_contig40608:712..1053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40608 713..1053 +
1691481206.9092517-UTR-H-paniculata_contig40608:712..10531691481206.9092517-UTR-H-paniculata_contig40608:712..1053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40608 713..1053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.5995123-CDS-H-paniculata_contig40608:490..7121622930242.5995123-CDS-H-paniculata_contig40608:490..712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40608 491..712 +
1691481206.9013717-CDS-H-paniculata_contig40608:490..7121691481206.9013717-CDS-H-paniculata_contig40608:490..712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40608 491..712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40608.10494.1

>prot_H-paniculata_contig40608.10494.1 ID=prot_H-paniculata_contig40608.10494.1|Name=mRNA_H-paniculata_contig40608.10494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MDRVEGEWAREDAQVAFICYGVPEAVPPTKAHEQQGRTDKLDESDTMLDQ
SSGTHLHCERGYQSWLRANKKEA*
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mRNA from alignment at H-paniculata_contig40608:455..1053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40608.10494.1 ID=mRNA_H-paniculata_contig40608.10494.1|Name=mRNA_H-paniculata_contig40608.10494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at H-paniculata_contig40608:455..1053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAGTGCAGCTACCGGGCATTAGTGCGCAGCTATATGGACAGGGTGGA
GGGAGAGTGGGCGCGGGAGGACGCTCAGGTGGCTTTCATTTGCTATGGCG
TTCCCGAGGCAGTACCTCCCACCAAGGCGCACGAGCAGCAAGGGCGAACA
GACAAGTTAGATGAGAGCGATACCATGTTAGACCAGAGCTCTGGCACCCA
TCTTCATTGCGAGCGAGGGTATCAAAGCTGGCTGCGTGCGAACAAGAAAG
AGGCGTGAAATGTGATAGATGCGGACGCGATATTATGCACCACTCGTCTC
TGTTCAAGCGCAGCGGTGATCCGTCCTTGGTATGCTACGGAGTCAGCATG
TCGGATCCGCGGAGTGCGAATCTCGCGCGAACTGGCACCCAGTTTCCACC
GCCGGCAAGCAGAGCCGCCGTTGGTGGGGCACGAAGGCGGCCGTGCGCGC
AGTCGCGAGAAGCATAGTCTGGACGCAAGCGCGTTGGGGGCGGAGTGACT
GCGGGAGGTAGAGCGGCTGTGGGTGGAGTGCCACAGCAGCGACGCGCGCA
GTCGTCGGTAGCAGTAGTGACACCCATGGTAGTCGACGGTAGAGCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig40608:455..1053+

>mRNA_H-paniculata_contig40608.10494.1 ID=mRNA_H-paniculata_contig40608.10494.1|Name=mRNA_H-paniculata_contig40608.10494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig40608:455..1053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGGGTGGAGGGAGAGTGGGCGCGGGAGGACGCTCAGGTGGCTTT
CATTTGCTATGGCGTTCCCGAGGCAGTACCTCCCACCAAGGCGCACGAGC
AGCAAGGGCGAACAGACAAGTTAGATGAGAGCGATACCATGTTAGACCAG
AGCTCTGGCACCCATCTTCATTGCGAGCGAGGGTATCAAAGCTGGCTGCG
TGCGAACAAGAAAGAGGCGTGAATGGACAGGGTGGAGGGAGAGTGGGCGC
GGGAGGACGCTCAGGTGGCTTTCATTTGCTATGGCGTTCCCGAGGCAGTA
CCTCCCACCAAGGCGCACGAGCAGCAAGGGCGAACAGACAAGTTAGATGA
GAGCGATACCATGTTAGACCAGAGCTCTGGCACCCATCTTCATTGCGAGC
GAGGGTATCAAAGCTGGCTGCGTGCGAACAAGAAAGAGGCGTGA
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