mRNA_H-paniculata_contig40600.10492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40600.10492.1
Unique NamemRNA_H-paniculata_contig40600.10492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40600.10492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40600contigH-paniculata_contig40600:68..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40600.10492.1prot_H-paniculata_contig40600.10492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40600 68..434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.4308176-CDS-H-paniculata_contig40600:67..2571622930242.4308176-CDS-H-paniculata_contig40600:67..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40600 68..257 +
1691481206.8357098-CDS-H-paniculata_contig40600:67..2571691481206.8357098-CDS-H-paniculata_contig40600:67..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40600 68..257 +
1622930242.4494705-CDS-H-paniculata_contig40600:360..4341622930242.4494705-CDS-H-paniculata_contig40600:360..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40600 361..434 +
1691481206.846451-CDS-H-paniculata_contig40600:360..4341691481206.846451-CDS-H-paniculata_contig40600:360..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40600 361..434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930242.4688535-UTR-H-paniculata_contig40600:434..6051622930242.4688535-UTR-H-paniculata_contig40600:434..605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40600 435..605 +
1691481206.8555543-UTR-H-paniculata_contig40600:434..6051691481206.8555543-UTR-H-paniculata_contig40600:434..605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40600 435..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40600.10492.1

>prot_H-paniculata_contig40600.10492.1 ID=prot_H-paniculata_contig40600.10492.1|Name=mRNA_H-paniculata_contig40600.10492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
SHTQPKKTGRPHILDVRLVQLSTFLRCELDGIRVHCSCRAYKALVSTKFQ
YFFLPIRNIASSASKEPVIVPDDLELILNARRRHRHI*
back to top

mRNA from alignment at H-paniculata_contig40600:68..605+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40600.10492.1 ID=mRNA_H-paniculata_contig40600.10492.1|Name=mRNA_H-paniculata_contig40600.10492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at H-paniculata_contig40600:68..605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATACCCAACCGAAAAAAACTGGTCGACCTCACATCCTTGACGTGCG
TCTGGTTCAATTATCAACCTTTTTACGGTGTGAACTGGATGGTATACGTG
TGCATTGTAGTTGCAGAGCCTATAAAGCTCTAGTCAGCACCAAATTTCAA
TATTTTTTTCTTCCAATCCGGAACATCGCATCGTCTGCAATATAGAGAGT
ACGTTGAAAGCTGTTATGCTTCATCCTACTGTAGAGTAAGCTGTTGTCCG
TGATGCGTCGTCCTTAGTTCACCTGCTACTGGTGGGAATGCTGGCAAAGA
ACCTGTAATAGTACCAGATGACCTTGAGCTTATTTTGAATGCTAGGCGTC
GTCATCGACACATTTAGAGCGTATGTATGGTTCTCCGATGAAATGTATAG
CTGTGTTAAGTGAACGAAAATGAGCACACTATTAATAATAGCCACACCAC
CACAAGCAGTTGCAACAGATGATAGATTGAGTGATGTGAGCCTGATTTAC
GTGATGGACATCATACGACAACACTACAATGTTTACCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40600:68..605+

>mRNA_H-paniculata_contig40600.10492.1 ID=mRNA_H-paniculata_contig40600.10492.1|Name=mRNA_H-paniculata_contig40600.10492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig40600:68..605+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATACCCAACCGAAAAAAACTGGTCGACCTCACATCCTTGACGTGCG
TCTGGTTCAATTATCAACCTTTTTACGGTGTGAACTGGATGGTATACGTG
TGCATTGTAGTTGCAGAGCCTATAAAGCTCTAGTCAGCACCAAATTTCAA
TATTTTTTTCTTCCAATCCGGAACATCGCATCGTCTGCAATCACATACCC
AACCGAAAAAAACTGGTCGACCTCACATCCTTGACGTGCGTCTGGTTCAA
TTATCAACCTTTTTACGGTGTGAACTGGATGGTATACGTGTGCATTGTAG
TTGCAGAGCCTATAAAGCTCTAGTCAGCACCAAATTTCAATATTTTTTTC
TTCCAATCCGGAACATCGCATCGTCTGCAAGCAAAGAACCTGTAATAGTA
CCAGATGACCTTGAGCTTATTTTGAATGCTAGGCGTCGTCATCGACACAT
TTAGGCAAAGAACCTGTAATAGTACCAGATGACCTTGAGCTTATTTTGAA
TGCTAGGCGTCGTCATCGACACATTTAG
back to top