mRNA_H-paniculata_contig40565.10487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40565.10487.1
Unique NamemRNA_H-paniculata_contig40565.10487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40565.10487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40565contigH-paniculata_contig40565:47..1208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930241.427234-CDS-H-paniculata_contig40565:46..1811622930241.427234-CDS-H-paniculata_contig40565:46..181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40565 47..181 +
1691481206.30671-CDS-H-paniculata_contig40565:46..1811691481206.30671-CDS-H-paniculata_contig40565:46..181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40565 47..181 +
1622930241.4444125-CDS-H-paniculata_contig40565:1139..12081622930241.4444125-CDS-H-paniculata_contig40565:1139..1208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40565 1140..1208 +
1691481206.3160949-CDS-H-paniculata_contig40565:1139..12081691481206.3160949-CDS-H-paniculata_contig40565:1139..1208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40565 1140..1208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40565.10487.1prot_H-paniculata_contig40565.10487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40565 47..1208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40565.10487.1

>prot_H-paniculata_contig40565.10487.1 ID=prot_H-paniculata_contig40565.10487.1|Name=mRNA_H-paniculata_contig40565.10487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MEDAPLYSTPSPAQILEMAISEVKEMVDAGLSEDVDGREDRRHKPAKRVV
RPVHSRVKAEQVGTLAAR
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mRNA from alignment at H-paniculata_contig40565:47..1208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40565.10487.1 ID=mRNA_H-paniculata_contig40565.10487.1|Name=mRNA_H-paniculata_contig40565.10487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1162bp|location=Sequence derived from alignment at H-paniculata_contig40565:47..1208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACGCGCCGCTCTACTCGACCCCATCGCCGGCGCAGATTTTGGA
GATGGCTATCTCTGAGGTAAAGGAGATGGTGGATGCTGGGCTATCGGAGG
ATGTGGACGGCAGGGAAGACCGGCGTCATAAGCCAGTGAGTGACACGAAC
CGACTACAACGACAATGTATCAACACTTTGCCGGACAGGGTATTTCTTGG
GGGTCGTATTCGTGTTGTTGTAAACCCTAGTTATGTGACCGTTGGCCGCG
CGTACTCGAGATGACGGAGGATGTATTTCTTGGGGAGGTATGAATGAAGC
ATCATCATTTTTCTTGAGTTGTAACGCCTGAGGGACAAGGGAAAAAGAAA
GAAAACGAACGATTTTTTAGTTTGTAGAAGCTTGCCCAGTTTTGTCGATT
CCGGTTTTTGTAACTAACGTACAGTATGTATGTTAGGGCGTTTTTGTTTC
TGTTTTGTTTTTGCGCTCTTATGCTGAAGATTATGGACCAAATCGATGGG
GACGTTTCAATTCATGCTTGCTGTCCGATTTGACCCTCGACCACCGTATC
CGTTGGGGTTACCGTTGGGGTTCCCGGGTGGTGCAGGTTGGGGGTCACTT
CGGTTTTTCGTCAATGTCGCCTTGGGTTATTGATATATATTTAGTGTACA
GGGCTCCTCGTTTGATCGGTTTGCTAAGAATGACGGGAGAAGCCTCCGTA
TTAAGCCGCGCTACATGAATTGTTGAGATTTTGTGGTTACGTTTTTCAGC
TAATCAATTATTCAATTTACAAATACCCTGCAATCTTGGATCATGCAATA
ATTGATGGCACTATTAGGGGACCAGACAGGTTGCATCGAAATGAGGGAAA
CGGGGGACATGAAATGGAAAGCGGGATTCATCTTTGAGATGGGACCTCCA
TCCTAATATTTATCCGTTTGTGGATATTTACATGTAATCCCGATCGAAAA
GCATTAAAAGGGCTGGGCATACGTCTGGTTTGTTTATTGGATGTTGGTTT
TGTGATGCTTTCTAATTTTCGATATGTCGATAATTGCTGTTTCTTTTTCA
TCTGTAATTGGTCCTGGAATCATGTCTTCTTGTGATCGGAAAGGCTAAGC
GGGTCGTCCGGCCTGTTCACTCGAGGGTCAAGGCTGAACAGGTGGGCACT
CTGGCGGCGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig40565:47..1208+

>mRNA_H-paniculata_contig40565.10487.1 ID=mRNA_H-paniculata_contig40565.10487.1|Name=mRNA_H-paniculata_contig40565.10487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig40565:47..1208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACGCGCCGCTCTACTCGACCCCATCGCCGGCGCAGATTTTGGA
GATGGCTATCTCTGAGGTAAAGGAGATGGTGGATGCTGGGCTATCGGAGG
ATGTGGACGGCAGGGAAGACCGGCGTCATAAGCCAATGGAGGACGCGCCG
CTCTACTCGACCCCATCGCCGGCGCAGATTTTGGAGATGGCTATCTCTGA
GGTAAAGGAGATGGTGGATGCTGGGCTATCGGAGGATGTGGACGGCAGGG
AAGACCGGCGTCATAAGCCAGCTAAGCGGGTCGTCCGGCCTGTTCACTCG
AGGGTCAAGGCTGAACAGGTGGGCACTCTGGCGGCGCGGGCTAAGCGGGT
CGTCCGGCCTGTTCACTCGAGGGTCAAGGCTGAACAGGTGGGCACTCTGG
CGGCGCGG
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