mRNA_H-paniculata_contig40528.10482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40528.10482.1
Unique NamemRNA_H-paniculata_contig40528.10482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40528.10482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40528contigH-paniculata_contig40528:1056..1422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.8665547-UTR-H-paniculata_contig40528:1055..10711622930240.8665547-UTR-H-paniculata_contig40528:1055..1071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40528 1056..1071 +
1691481206.0082202-UTR-H-paniculata_contig40528:1055..10711691481206.0082202-UTR-H-paniculata_contig40528:1055..1071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40528 1056..1071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.8786635-CDS-H-paniculata_contig40528:1071..14221622930240.8786635-CDS-H-paniculata_contig40528:1071..1422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40528 1072..1422 +
1691481206.025301-CDS-H-paniculata_contig40528:1071..14221691481206.025301-CDS-H-paniculata_contig40528:1071..1422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40528 1072..1422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40528.10482.1prot_H-paniculata_contig40528.10482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40528 1072..1422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40528.10482.1

>prot_H-paniculata_contig40528.10482.1 ID=prot_H-paniculata_contig40528.10482.1|Name=mRNA_H-paniculata_contig40528.10482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MNTLTGTRLSPLTNSLQNEFSNAVLAPGLIPLNGPADKNLFHQCYRHLHE
ALPQRTAKDLGATLQGVLEGCRGCSLAKGLRKEIPRETSTRAREVPPSLG
GRDSSLNESGEGNSDIG
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mRNA from alignment at H-paniculata_contig40528:1056..1422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40528.10482.1 ID=mRNA_H-paniculata_contig40528.10482.1|Name=mRNA_H-paniculata_contig40528.10482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=367bp|location=Sequence derived from alignment at H-paniculata_contig40528:1056..1422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCCTAACGGGAACATGAACACTTTGACCGGTACCCGCCTCTCGCCGC
TAACCAATTCATTGCAAAATGAATTCTCAAATGCTGTGCTCGCGCCCGGA
CTCATACCCCTAAACGGGCCTGCTGACAAAAACCTGTTTCATCAATGTTA
CCGTCACCTGCACGAGGCATTACCACAGCGAACCGCAAAAGACTTGGGGG
CCACGCTACAAGGGGTTCTGGAGGGGTGTCGCGGGTGTTCACTGGCGAAA
GGGCTGCGAAAGGAGATTCCACGGGAGACATCGACACGTGCACGGGAGGT
TCCTCCTTCGTTGGGAGGGAGGGATTCTTCACTGAATGAGAGCGGGGAGG
GCAACTCCGACATCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig40528:1056..1422+

>mRNA_H-paniculata_contig40528.10482.1 ID=mRNA_H-paniculata_contig40528.10482.1|Name=mRNA_H-paniculata_contig40528.10482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig40528:1056..1422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACACTTTGACCGGTACCCGCCTCTCGCCGCTAACCAATTCATTGCA
AAATGAATTCTCAAATGCTGTGCTCGCGCCCGGACTCATACCCCTAAACG
GGCCTGCTGACAAAAACCTGTTTCATCAATGTTACCGTCACCTGCACGAG
GCATTACCACAGCGAACCGCAAAAGACTTGGGGGCCACGCTACAAGGGGT
TCTGGAGGGGTGTCGCGGGTGTTCACTGGCGAAAGGGCTGCGAAAGGAGA
TTCCACGGGAGACATCGACACGTGCACGGGAGGTTCCTCCTTCGTTGGGA
GGGAGGGATTCTTCACTGAATGAGAGCGGGGAGGGCAACTCCGACATCGG
AATGAACACTTTGACCGGTACCCGCCTCTCGCCGCTAACCAATTCATTGC
AAAATGAATTCTCAAATGCTGTGCTCGCGCCCGGACTCATACCCCTAAAC
GGGCCTGCTGACAAAAACCTGTTTCATCAATGTTACCGTCACCTGCACGA
GGCATTACCACAGCGAACCGCAAAAGACTTGGGGGCCACGCTACAAGGGG
TTCTGGAGGGGTGTCGCGGGTGTTCACTGGCGAAAGGGCTGCGAAAGGAG
ATTCCACGGGAGACATCGACACGTGCACGGGAGGTTCCTCCTTCGTTGGG
AGGGAGGGATTCTTCACTGAATGAGAGCGGGGAGGGCAACTCCGACATCG
GA
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