mRNA_H-paniculata_contig40519.10480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40519.10480.1
Unique NamemRNA_H-paniculata_contig40519.10480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.410e-33
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            FQEQMGMPKEEDLNSWSHHYSTDTADD VFRGAM+GTGDSLVSFVFGLEVTWDLLS+QLE+EAE
Sbjct:  950 FQEQMGMPKEEDLNSWSHHYSTDTADDPVFRGAMMGTGDSLVSFVFGLEVTWDLLSVQLEQEAE 1013
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A7S1DCT5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCT5_CYCTE)

HSP 1 Score: 85.9 bits (211), Expect = 5.430e-20
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            FQEQ+GMP EED+ +WSHHYSTD+ DD +FR AM G   S VSFVFGLEVTW L+  + +EE E
Sbjct:   47 FQEQIGMPDEEDMRNWSHHYSTDSVDDPIFRAAMKGC--SAVSFVFGLEVTWSLIQQRQQEEEE 108
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A7S1BT35_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BT35_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.430e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            FQEQ+GMP+EED+ +WSHH+STDT DD VFR AM G     VSFVFGLEVTW L+  + +E+ E
Sbjct:  212 FQEQIGMPEEEDMRNWSHHHSTDTVDDPVFRAAMRGFNS--VSFVFGLEVTWSLIQEKEQEQEE 273
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A7S1BT52_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BT52_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.940e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            FQEQ+GMP+EED+ +WSHH+STDT DD VFR AM G     VSFVFGLEVTW L+  + +E+ E
Sbjct:  937 FQEQIGMPEEEDMRNWSHHHSTDTVDDPVFRAAMRGFNS--VSFVFGLEVTWSLIQEKEQEQEE 998
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A6T8PAH4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8PAH4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.600e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            FQEQ+GMP EE++ SWSHHYST+T DD +FR AM G     VSFVFGLEVTW L+  +  EE E
Sbjct:   77 FQEQLGMPDEENMRSWSHHYSTNTVDDPIFRAAMKGY--DTVSFVFGLEVTWSLIQQRAMEEEE 138
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: W7TPR5_9STRA (Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLG--TGDSLVSFVFGLEVTWDLL 165
            FQ Q+GMP EEDLN+WSHH++ +T DD VFR AMLG  TG  +VSFVFGLEVTW LL
Sbjct:  978 FQAQVGMPLEEDLNNWSHHWNVETVDDPVFREAMLGLGTGMDVVSFVFGLEVTWSLL 1034
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A7S2A0G1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0G1_TRICV)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-16
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLL 165
            FQEQ+GMP EE++  WSHHY  DT DD VFR AM  T    VSFVFGLEVTW L+
Sbjct:    3 FQEQIGMPDEENMRHWSHHYDADTVDDPVFRAAMRNT--DAVSFVFGLEVTWSLI 55
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: K0TNR5_THAOC (Bromo domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TNR5_THAOC)

HSP 1 Score: 79.7 bits (195), Expect = 6.290e-16
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            +QEQ+GMP EE++  WSHH+STDT DD +FR AM G  DS VSFVFGLEVTW L+  + +EE E
Sbjct:  222 YQEQIGMPDEENMRHWSHHHSTDTVDDPIFRAAMRGY-DS-VSFVFGLEVTWSLIQQRQQEEEE 283
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BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A1Z5KRM6_FISSO (DNA repair and recombination protein RAD54 and RAD54-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRM6_FISSO)

HSP 1 Score: 79.7 bits (195), Expect = 6.660e-16
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            +QEQ+GMP EE++ +WSHH++TDT DD +FR AM G     VSFVFGLEVTW L+  + +EE E
Sbjct:  910 YQEQIGMPDEENMRNWSHHHTTDTVDDPIFRAAMRGC--DAVSFVFGLEVTWSLIQERQQEEEE 971
[Close]
BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Match: A0A7S3UQQ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQQ3_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 9.680e-16
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 FQEQMGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDLLSIQLEEEAE 192
            +Q Q+GMP EEDL SWSHHYS +T DD  FR A++G+    VSFVFGL VTWDL+  Q ++EAE
Sbjct:  231 YQGQIGMPCEEDLRSWSHHYSPETLDDPCFRRALVGS--DAVSFVFGLAVTWDLIQEQQKKEAE 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40519.10480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE8.410e-3393.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1DCT5_CYCTE5.430e-2064.06Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S1BT35_9STRA1.430e-1762.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BT52_9STRA2.940e-1762.50Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A6T8PAH4_9STRA6.600e-1762.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W7TPR5_9STRA1.030e-1670.18Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2A0G1_TRICV3.270e-1665.45Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
K0TNR5_THAOC6.290e-1662.50Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A1Z5KRM6_FISSO6.660e-1657.81DNA repair and recombination protein RAD54 and RAD... [more]
A0A7S3UQQ3_HETAK9.680e-1660.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40519contigH-paniculata_contig40519:463..1489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue6.8e-26
Seed eggNOG ortholog2880.D7FYB3
Preferred nameRAD54L
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons2
Model size192
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40519.10480.1prot_H-paniculata_contig40519.10480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40519 475..1489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.6372929-UTR-H-paniculata_contig40519:462..4741622930240.6372929-UTR-H-paniculata_contig40519:462..474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40519 463..474 +
1691481205.9487169-UTR-H-paniculata_contig40519:462..4741691481205.9487169-UTR-H-paniculata_contig40519:462..474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40519 463..474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930240.6799667-CDS-H-paniculata_contig40519:474..5641622930240.6799667-CDS-H-paniculata_contig40519:474..564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40519 475..564 +
1691481205.9625905-CDS-H-paniculata_contig40519:474..5641691481205.9625905-CDS-H-paniculata_contig40519:474..564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40519 475..564 +
1622930240.6983259-CDS-H-paniculata_contig40519:1399..14891622930240.6983259-CDS-H-paniculata_contig40519:1399..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40519 1400..1489 +
1691481205.9723065-CDS-H-paniculata_contig40519:1399..14891691481205.9723065-CDS-H-paniculata_contig40519:1399..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40519 1400..1489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40519.10480.1

>prot_H-paniculata_contig40519.10480.1 ID=prot_H-paniculata_contig40519.10480.1|Name=mRNA_H-paniculata_contig40519.10480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MGMPKEEDLNSWSHHYSTDTADDSVFRGAMLGTGDSLVSFVFGLEVTWDL
LSIQLEEEAE
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mRNA from alignment at H-paniculata_contig40519:463..1489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40519.10480.1 ID=mRNA_H-paniculata_contig40519.10480.1|Name=mRNA_H-paniculata_contig40519.10480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-paniculata_contig40519:463..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCAGGAGCAAATGGGCATGCCCAAAGAGGAGGACTTGAACTCCTGGAG
TCACCATTATTCCACCGACACCGCGGATGATTCCGTCTTCAGAGGAGCGA
TGGTGGGCGACTGCCGTACCATTGAGGCCATTATATATATATAGCTGCTG
GGTTTATCGTAGAACCTGGAACTATCGCACCCGCACATGTGCCGTTTCGG
ATTGATCATCACCACAACCCCGGCGTTTTAACTACCAAGGACACGCGTAA
CTCCGGCATCCTTAACCCTTGATGATTTCCCGACCCCCTGTTTAGTTGTC
GAGTGCTTGCTTACTATGTTGCTGTTGGGAAAACAGCCAGTGCCATTTGC
GCATTCTCGCCTTACACTAAATCTAAGGCAAAAAACTCCTCCCGAACGGG
AAACAAAACGATGCCCCTTGTGCACTTTAGACGCCTTAACAAAACGTATT
CGTCGTTATTCACGACTGGTCGTTGGCAGATCTAACTTATTGACCGTTAC
AAAAGTTCGGCTTCTGAACGGTCAACCCTGTTAGCACCGGATGTTGTTTC
GAGGGGGAAAATAAATGCAAAGCAAATGTTGAGCGCTGTAACAGTCTTCG
TGAGTAGAGTCATGCATGCCTACAACCATCTCCTGTCTGTTTTAACAGCG
GAGGCTCCATATAATCATGTCATCGGCGTCGTGTTCCCTCCCCCCCTCCC
TGTTTTGAGATAAGAATTAGGTGAGAACCGGTTCTCAAAGGGTTCTAAGC
GTGGCTGACACCATTTTGCTGCTGTCTACTCTCTGGTCTAGCTGATTCAT
CCTGTTATTGTTGTTCCAACGTTACCCATCCGCCCCCGCCTGATCGGCCC
CTTCGTCCTGCCTACTGTTCCTTCCCGTCTTTCTGATTTTGCCGTGTTGC
GTGTTGGTTGTGGCGATGACATGTACGAAACCTACAGTTGGGTACAGGAG
ACTCTTTGGTGAGCTTCGTTTTCGGCCTGGAAGTAACCTGGGACCTCTTG
TCAATCCAGCTGGAGGAAGAAGCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40519:463..1489+

>mRNA_H-paniculata_contig40519.10480.1 ID=mRNA_H-paniculata_contig40519.10480.1|Name=mRNA_H-paniculata_contig40519.10480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig40519:463..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATGCCCAAAGAGGAGGACTTGAACTCCTGGAGTCACCATTATTC
CACCGACACCGCGGATGATTCCGTCTTCAGAGGAGCGATGATGGGCATGC
CCAAAGAGGAGGACTTGAACTCCTGGAGTCACCATTATTCCACCGACACC
GCGGATGATTCCGTCTTCAGAGGAGCGATGTTGGGTACAGGAGACTCTTT
GGTGAGCTTCGTTTTCGGCCTGGAAGTAACCTGGGACCTCTTGTCAATCC
AGCTGGAGGAAGAAGCCGAATTGGGTACAGGAGACTCTTTGGTGAGCTTC
GTTTTCGGCCTGGAAGTAACCTGGGACCTCTTGTCAATCCAGCTGGAGGA
AGAAGCCGAA
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