mRNA_H-paniculata_contig4049.10473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4049.10473.1
Unique NamemRNA_H-paniculata_contig4049.10473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A6H5KTN5_9PHAE (DJ-1_PfpI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTN5_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.360e-89
Identity = 150/204 (73.53%), Postives = 169/204 (82.84%), Query Frame = 3 
Query:  246 SALFVSGGASTTEMSAAAATGGGVKRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            S  +V GG +   M  AAA   G K VLVPVADGSEEIESVTIIDTLVRAGA+VTVAS+G  ++VTCSRGVKI ADCKI ECE  DWDAVVCPGGMPGA +LK+N TLE++L KQN++GRIV AICAAPAVVLASHGLL+G +ATCYPAS FQ+KIPQL+ EKVVVD N+ITSQGPATSMAF+LQLV SLFG  KA EV   +L
Sbjct:   35 SLAWVPGGPAEAAM--AAAESAGAKHVLVPVADGSEEIESVTIIDTLVRAGALVTVASIGPEVEVTCSRGVKIKADCKIAECEARDWDAVVCPGGMPGAVSLKENETLEAILRKQNSEGRIVGAICAAPAVVLASHGLLEGKQATCYPASVFQSKIPQLVSEKVVVDQNLITSQGPATSMAFALQLVGSLFGQEKADEVAKGLL 236
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A6V1PTF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PTF7_HETAK)

HSP 1 Score: 222 bits (566), Expect = 1.420e-65
Identity = 115/186 (61.83%), Postives = 139/186 (74.73%), Query Frame = 3 
Query:  300 ATGGGVKRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            ATG   K+VLVP+ADGSEEIESVTIIDTLVRAGA VTVASV   LQVTCSRGVK+ AD  I +     +DA+ CPGG+PGA +L+D+ TL +LL  QN  GR+VAA+CAAPAVVL +HGL+ G  ATCYPA  F++ I     + VVV GN++TSQGP TS+AF+L LV  L+G  KA E+ G ML
Sbjct:   49 ATGSAAKKVLVPIADGSEEIESVTIIDTLVRAGAEVTVASVSPELQVTCSRGVKLVADKSIADAAGETYDAIACPGGLPGANHLRDDPTLRALLQAQNEAGRLVAAVCAAPAVVLQTHGLIAGRAATCYPADQFKSAIENYSTDPVVVSGNLVTSQGPGTSLAFALALVAELYGEEKASELKGQML 234
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A6S9E808_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E808_HETAK)

HSP 1 Score: 218 bits (555), Expect = 2.210e-64
Identity = 112/180 (62.22%), Postives = 136/180 (75.56%), Query Frame = 3 
Query:  318 KRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            K+VLVP+ADGSEEIESVTIIDTLVRAGA VTVASV   LQVTCSRGVK+ AD  I +     +DA+ CPGG+PGA +L+D+ TL +LL  QN  GR+VAA+CAAPAVVL +HGL+ G  ATCYPA  F++ I     + VVV GN++TSQGP TS+AF+L LV  L+G  KA E+ G ML
Sbjct:   24 KKVLVPIADGSEEIESVTIIDTLVRAGAEVTVASVSPELQVTCSRGVKLVADKSIADAAGETYDAIACPGGLPGANHLRDDPTLRALLQAQNEAGRLVAAVCAAPAVVLQTHGLIAGRAATCYPADQFKSAIENYSTDPVVVSGNLVTSQGPGTSLAFALALVAELYGEEKASELKGQML 203
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A482RT38_9ARCH (DJ-1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT38_9ARCH)

HSP 1 Score: 214 bits (544), Expect = 6.530e-63
Identity = 106/180 (58.89%), Postives = 132/180 (73.33%), Query Frame = 3 
Query:  318 KRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            K VLVP+A GSEE+E+VTIIDTLVR GA VTVA VG  L VTCSRGVKI ADC I +C    WD +VCPGGMPGA +L ++ TL  +L K   D + +AAICAAPAVVLA+HG L    ATCYP S F AKI + + ++VV DG +ITS+GP T++ FSL+LV+ L+G  KA+++   ML
Sbjct:   13 KHVLVPIATGSEEVEAVTIIDTLVRGGAKVTVAGVGSELTVTCSRGVKIVADCLISDCANKSWDMIVCPGGMPGAQHLSESHTLIEILQKHAHDNKFIAAICAAPAVVLAAHGFLTNKTATCYPVSKFTAKIERYVSQRVVQDGQVITSEGPGTALEFSLKLVQVLYGHEKAEQIKNEML 192
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A1V5W8D7_9CHLR (Chaperone protein YajL n=1 Tax=Chloroflexi bacterium ADurb.Bin222 TaxID=1852858 RepID=A0A1V5W8D7_9CHLR)

HSP 1 Score: 200 bits (509), Expect = 6.810e-58
Identity = 101/181 (55.80%), Postives = 136/181 (75.14%), Query Frame = 3 
Query:  315 VKRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            +KRVLVP+A+G+EE+E+V+I+D L RAGA VTVASV + LQVT SRGVK+ AD +I +C    +D +  PGGMPGA +L+D+  L +LL  Q A GR+ AAICAAP VVL  HGLL+G +ATC+P+   + + P+ + ++VVVDGN +TS+GP T++ F+LQL   LFG  KA+EVG AML
Sbjct:    1 MKRVLVPIAEGTEELEAVSIVDVLRRAGAEVTVASVMERLQVTASRGVKLVADARIGDCATEAYDLIALPGGMPGAVHLRDSAELTALLRAQAAAGRLYAAICAAPVVVLQHHGLLEGRRATCHPSFEKELRNPEAVAQRVVVDGNCVTSRGPGTAVEFALQLAALLFGETKAREVGAAML 181
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A7S1XF23_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF23_9RHOD)

HSP 1 Score: 201 bits (512), Expect = 2.690e-57
Identity = 109/182 (59.89%), Postives = 132/182 (72.53%), Query Frame = 3 
Query:  324 VLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEK---VVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAMLV 860
            VLVPV +GSEEIE+VTIIDTLVRAGA VTVASV + LQVT SRGVKI AD  I +C +  WD +  PGGMPGA NL++++ L  LL  QN   + + AICA+PAVVLASHGLL+  +ATCYPA  F  ++P  ID+    VVV GNI TS+GP T++ FSL LV  LFG AKA E+   ML+
Sbjct:   68 VLVPVGNGSEEIETVTIIDTLVRAGANVTVASVEEDLQVTASRGVKIVADKAIGDCLDSPWDLIALPGGMPGAENLRNSSDLAHLLKHQNGQDKRIGAICASPAVVLASHGLLNDRQATCYPAPQFLDQLPNPIDDDDVPVVVSGNITTSRGPGTALVFSLNLVHQLFGKAKADELAAVMLL 249
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A1G2Z6H8_9BACT (Dihydroxyacetone kinase n=1 Tax=Planctomycetes bacterium RBG_13_62_9 TaxID=1801964 RepID=A0A1G2Z6H8_9BACT)

HSP 1 Score: 197 bits (500), Expect = 1.680e-56
Identity = 108/185 (58.38%), Postives = 134/185 (72.43%), Query Frame = 3 
Query:  318 KRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGD----SLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAMLV 860
            KRVLVP+ADGSEEIE+V IIDTL RAGA VTVA+V      SLQVT SRGVK+ AD +I +C    +D +  PGGMPGA +L+D+  L  +L KQ   GR+  AICAAPAV L  HGLLD  +ATC+P+   +     +  ++VVVDGN +TSQGPAT++ F+L+LVE LFG AKA+EVG AMLV
Sbjct:    3 KRVLVPIADGSEEIEAVCIIDTLRRAGAEVTVATVETQNLASLQVTASRGVKLVADARIADCASQTYDCIALPGGMPGAEHLRDSAELIEMLKKQKQAGRLYGAICAAPAVALRPHGLLDKVRATCFPSLRNKLDPAYVSTDRVVVDGNCVTSQGPATAIDFALKLVELLFGPAKAKEVGSAMLV 187
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A813HFA6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HFA6_POLGL)

HSP 1 Score: 196 bits (498), Expect = 3.100e-56
Identity = 103/179 (57.54%), Postives = 131/179 (73.18%), Query Frame = 3 
Query:  324 VLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAMLV 860
            VLVPVAD SEEIE+  I DTL RAGA V VASV  +LQV  SRG+KI ADC I +C   +WDA+VCPGGMPGA +L+D+  L  LL +Q+   ++ AA+CA+PAVV ++HGLL    ATCYP   F+A +P   + +VVVDG+IITSQGP TS+ F+L++VE LFG  K++E   AMLV
Sbjct:    6 VLVPVADDSEEIETACITDTLTRAGAKVVVASVMPNLQVKMSRGLKIVADCSIEDCAGKEWDAIVCPGGMPGAEHLRDSPALIELLKEQSKRSKVTAAMCASPAVVFSTHGLLP-ETATCYPNPKFKAMVPGWQEAQVVVDGHIITSQGPGTSLHFALKIVEKLFGKEKSEETAKAMLV 183
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BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: K8Z3U6_NANGC (Dj-1 family protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3U6_NANGC)

HSP 1 Score: 195 bits (496), Expect = 1.080e-55
Identity = 107/192 (55.73%), Postives = 137/192 (71.35%), Query Frame = 3 
Query:  318 KRVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSL---------QVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPASAFQAKIPQLID--EKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAMLV 860
            K+VLVPVADGSEEIESVTIID LVRAGA VTVASV  S          QVTCSRGVK+ AD  I +C   +WD + CPGG+PGA +L+D+  L +LL +Q+   R+VAAICA+PAVVL +HG L G +ATC+PA  F + + +  D  E VV DG+++TS+GP T++ F+L LV+ L G AKA+EV   +LV
Sbjct:    6 KKVLVPVADGSEEIESVTIIDVLVRAGAAVTVASVMPSASTATLPRSWQVTCSRGVKLVADKGIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAQRLVAAICASPAVVLHTHGFLTGKRATCFPAERFVSSLARYEDGEEGVVEDGHVVTSRGPGTTLRFALTLVDRLCGRAKAEEVAKGLLV 197
[Close]
BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Match: A0A2D5PGQ2_9GAMM (DJ-1_PfpI domain-containing protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2D5PGQ2_9GAMM)

HSP 1 Score: 194 bits (493), Expect = 1.680e-55
Identity = 101/181 (55.80%), Postives = 126/181 (69.61%), Query Frame = 3 
Query:  321 RVLVPVADGSEEIESVTIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVVCPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDGHKATCYPA--SAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLFGTAKAQEVGGAML 857
            + LV +ADGSE+IE+V+IIDTL R G  VTVASV DS Q+TC+ G KITAD  I +C+   WDAV+ PGGMPGA +L DN     L+ KQ AD ++ AAICA+PAVV+A HG+LDG KATCYP             + E VVVD NI+TS+GPAT++ F+L LV  L G  K++EVG  ML
Sbjct:    3 KALVGIADGSEDIEAVSIIDTLRRGGVEVTVASVMDSQQITCANGTKITADAMISDCDGQQWDAVIAPGGMPGAEHLSDNAVFTGLMKKQLADNKVAAAICASPAVVMAKHGMLDGKKATCYPGFEELLLESATMALTEAVVVDENIVTSRGPATAVTFALVLVGKLCGPEKSREVGQGML 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4049.10473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTN5_9PHAE2.360e-8973.53DJ-1_PfpI domain-containing protein n=2 Tax=Ectoca... [more]
A0A6V1PTF7_HETAK1.420e-6561.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9E808_HETAK2.210e-6462.22Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A482RT38_9ARCH6.530e-6358.89DJ-1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A1V5W8D7_9CHLR6.810e-5855.80Chaperone protein YajL n=1 Tax=Chloroflexi bacteri... [more]
A0A7S1XF23_9RHOD2.690e-5759.89Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1G2Z6H8_9BACT1.680e-5658.38Dihydroxyacetone kinase n=1 Tax=Planctomycetes bac... [more]
A0A813HFA6_POLGL3.100e-5657.54Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
K8Z3U6_NANGC1.080e-5555.73Dj-1 family protein n=1 Tax=Nannochloropsis gadita... [more]
A0A2D5PGQ2_9GAMM1.680e-5555.80DJ-1_PfpI domain-containing protein n=1 Tax=Oceano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4049contigH-paniculata_contig4049:572..6379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue1.3e-73
Seed eggNOG ortholog2880.D7FQJ0
KEGG koko:K03152
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006081,GO:0006082,GO:0006089,GO:0006457,GO:0006464,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009408,GO:0009438,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0022613,GO:0030054,GO:0030091,GO:0031090,GO:0032787,GO:0033554,GO:0034599,GO:0036211,GO:0036524,GO:0036525,GO:0042026,GO:0042180,GO:0042182,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046394,GO:0046686,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051596,GO:0051716,GO:0055044,GO:0061727,GO:0065007,GO:0070887,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080134,GO:0080135,GO:0098588,GO:0098805,GO:0140096,GO:1900407,GO:1900409,GO:1901135,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902882,GO:1902884
EggNOG free text desc.guanine deglycation, methylglyoxal removal
EggNOG OGsCOG0693@1,KOG2764@2759
Ec32 ortholog description4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
Ec32 orthologEc-01_008860.1
EC3.5.1.124
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons6
Model size1669
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4049.10473.1prot_H-paniculata_contig4049.10473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4049 1375..5182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930239.0581198-UTR-H-paniculata_contig4049:571..13741622930239.0581198-UTR-H-paniculata_contig4049:571..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 572..1374 -
1691481205.0782557-UTR-H-paniculata_contig4049:571..13741691481205.0782557-UTR-H-paniculata_contig4049:571..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 572..1374 -
1622930239.1779864-UTR-H-paniculata_contig4049:5182..51901622930239.1779864-UTR-H-paniculata_contig4049:5182..5190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 5183..5190 -
1691481205.1377313-UTR-H-paniculata_contig4049:5182..51901691481205.1377313-UTR-H-paniculata_contig4049:5182..5190Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 5183..5190 -
1622930239.2005355-UTR-H-paniculata_contig4049:6319..63791622930239.2005355-UTR-H-paniculata_contig4049:6319..6379Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 6320..6379 -
1691481205.1478512-UTR-H-paniculata_contig4049:6319..63791691481205.1478512-UTR-H-paniculata_contig4049:6319..6379Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4049 6320..6379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930239.0792193-CDS-H-paniculata_contig4049:1374..14401622930239.0792193-CDS-H-paniculata_contig4049:1374..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 1375..1440 -
1691481205.0892923-CDS-H-paniculata_contig4049:1374..14401691481205.0892923-CDS-H-paniculata_contig4049:1374..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 1375..1440 -
1622930239.1113422-CDS-H-paniculata_contig4049:2464..25591622930239.1113422-CDS-H-paniculata_contig4049:2464..2559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 2465..2559 -
1691481205.0982804-CDS-H-paniculata_contig4049:2464..25591691481205.0982804-CDS-H-paniculata_contig4049:2464..2559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 2465..2559 -
1622930239.1290545-CDS-H-paniculata_contig4049:3311..34261622930239.1290545-CDS-H-paniculata_contig4049:3311..3426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 3312..3426 -
1691481205.1073678-CDS-H-paniculata_contig4049:3311..34261691481205.1073678-CDS-H-paniculata_contig4049:3311..3426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 3312..3426 -
1622930239.1443882-CDS-H-paniculata_contig4049:4046..41991622930239.1443882-CDS-H-paniculata_contig4049:4046..4199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 4047..4199 -
1691481205.1168787-CDS-H-paniculata_contig4049:4046..41991691481205.1168787-CDS-H-paniculata_contig4049:4046..4199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 4047..4199 -
1622930239.1611805-CDS-H-paniculata_contig4049:4813..51821622930239.1611805-CDS-H-paniculata_contig4049:4813..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 4814..5182 -
1691481205.1280446-CDS-H-paniculata_contig4049:4813..51821691481205.1280446-CDS-H-paniculata_contig4049:4813..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4049 4814..5182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4049.10473.1

>prot_H-paniculata_contig4049.10473.1 ID=prot_H-paniculata_contig4049.10473.1|Name=mRNA_H-paniculata_contig4049.10473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MGYLAYMAALLGALPTAHAFFAATVGFVAPKMSSVAAAAHYPSARAVAWT
GLRGLTGRPSALFVSGGASTTEMSAAAATGGGVKRVLVPVADGSEEIESV
TIIDTLVRAGAVVTVASVGDSLQVTCSRGVKITADCKIHECEEHDWDAVV
CPGGMPGATNLKDNTTLESLLWKQNADGRIVAAICAAPAVVLASHGLLDG
HKATCYPASAFQAKIPQLIDEKVVVDGNIITSQGPATSMAFSLQLVESLF
GTAKAQEVGGAMLVA*
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mRNA from alignment at H-paniculata_contig4049:572..6379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4049.10473.1 ID=mRNA_H-paniculata_contig4049.10473.1|Name=mRNA_H-paniculata_contig4049.10473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5808bp|location=Sequence derived from alignment at H-paniculata_contig4049:572..6379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCACTGCATCCTAACTTGCTTAGGAGTTCTTCCTGATCTGCTGCCTG
TGCTGCCTATGTGAGAATAGGTGCTCATGCAGTACATGCAATCACGCTCA
CGTTTTCTGTTCTATGGTATTAATGGTTGTATTGTCTGGATTGCTGGTCT
GCGGCGCCATCTTATGTAGGTAGGTTTCACTGCCGCCGTATCTGGCCATG
GTGTCATTTGCCTATGTTGGAAGTACTGCCGTGCTATCTTTGGCGATCGG
AAGCCAATAGCTGCACAAAAACCGCGTTTGGAAACCATTTGCATACGATT
GGATTTGCGTGTCATTTTGTCCGTGTACATGTACGATGTGAAAGTGGACA
ATGTAGCGGTCAAGCGTTTTCCCTTCCGTCTACCCAGAGGTACCACTCTA
GATTAGCACAAGCGATATGTGCATTATGGACGTCCTTTGCTGTTTCGATG
CCGCAGGGTGTGACCGAGTTGCGGTCTATTCTCGTTGCATCAACAGAAAC
CACCCACCACACCTCCATATTCGGCGTCTTCTGTCTGGTGTACTGCTACT
GTCTTGCTTGTGTATATCGGTAACATCTGCGTGTGGTCGATACTTATACC
CGTAAGGTATTTTAGGAAAAGGAAACCGGTCCGTGATTGTGGCGCTTCTG
ATAGGGCTCGCAGGCTGCTTGTCGGTTCTCCTTATAACTCCTCGGTTAGG
CAGTGCCGAGTCACAGAACACGGTGGAAGGTAAGCGGGAAAAAGACGGTG
TAACAGGACTTTGTTTCACCGTACACGATACTGCACATAAATCCGGAAAC
CTGCCATGTATCGCAAACGTCGACCTATATCCCACACTGAGTAAAATAGT
CATTACGCGTGTTCATATTTTAATAGTCTCTTCTTTCATCAGCCCCAGCA
GAAGATACGTAACACACATTGAGAAACCGAGGCAACATTGGCCCTCCTCG
CGGTTTTTCACGCTGTCACAGATCTGTGTAGTTGTAACTTTCGTGTTAAC
TCCCACTCCCCACCTCTACCCCCTCCCCACCGCCCCTACCCCCGTCTCTA
TCCCCCCCCCCCACCCTATCTGCGTGCTCGCTCGAAATGGAAAATACCCC
TTACCTACTCTTACATATCACCACCACCACCATCACCACCAACAACATGA
CATCAAACCCCCCACATAAAACAACAATATGCAACGAAGTACGGATTATG
GGATACCTCGCGTACATGGCGGCGCTGTTAGGGGCCCTTCCTACAGCCCA
CGCGTTTTTCGCCGCGACCGTCGGTTTTGTAGCACCGAAAATGTCATCGG
TGGCCGCCGCCGCCCACTACCCGAGCGCCAGAGCGGTTGCTTGGACGGGT
TTGAGGGGTCTGACGGGTCGCCCCTCGGCGCTGTTCGTGTCAGGCGGCGC
GTCAACGACCGAGATGTCGGCGGCAGCTGCGACGGGCGGTGGAGTGAAGC
GCGTCCTGGTCCCCGTAGCGGACGGAAGCGAGGAGATCGAGAGCGTTACG
ATCATTGACACGCTGGTTCGGGCCGGTGCGGTGGTGACAGTCGCGAGCGT
CGGAGATAGCTTACAGGTGACAGATATTACGCGGTGTTGTCTAATTGTAC
TTCGCGTCGTTGTACTCAACGACATCCAGTGCCACTGATTGGCTTCTTAC
CATACGTTGTATATTGCAGTGGCTGTGTTGGTTCGACGTGCAGCTTTGAA
GCATAACTACCCCCCCTCCCCCTGATCACAACTCCGGCATGCAGCACATG
AATACGCCCCCTATTGATCTAATTTGGCTTGTGAGTGTGCACAGCTGAAG
TTTGAGGTCAGCTACATAGCCTTAACATGGGTACCATGAAGTTAATATAT
GAACGTTAGAGCTTAGTGTACTAACTGTGGCATTGTCATGGTACCCCCTC
CCTTTCCCCTCCCTCCCTACCTTTGATATTGTTGAATAAAAATGATGACC
AGGCAGGACTATAATATGTATTGGATAGATCATGGGATCGGTTTTGAATT
CTGGTAAAGTGTTCGTTTGTTTGTTTTTCGTTCGTGGGAGTCAATACAGT
AGTCGTTTTGTGTACAAGCATAGCGTCTTGAAGGGACGACGAACGAGACG
TTTCTTCAGCCTTTTCCACACACAATGGCGCACGGCTTCTCTCTGTTGCT
GCTTTCATGGGGGTGGTTGGACTCCGACAGGTGACCTGCTCGAGAGGGGT
GAAGATCACAGCGGACTGCAAGATTCACGAGTGTGAAGAACACGATTGGG
ATGCGGTTGTTTGCCCCGGAGGCATGCCCGGCGCCACCAATCTCAAGGAT
AACACGACCCTTGAGTCTCTTTTGTGGAAACAGGTGATAAATGAATGCAA
TTGGCGATACAAGCGGGAGACGAAAGGCTCTGTTTGTGTCATGACGGCCC
GCAACAACCTCTGCGGGTGCTGGGTCGTCTTCCGAGGCGCAGCGGGACGC
CGCGTTTCCTTTAGAATAATGATGCTGACTGTCTCTCCATCGTGGTCTCT
GTCTTATAATAGGGAGATACGCCGGCGGTTATTCACACACCTGCCACCAT
TTCCAGGCCATCTTATCTGTTTGTATCTACGATATTTTTTGCCGGTCACG
GCAGCTGTGATAGTAGTATGGCGTATTCTGTATGCGAAGTACCCACCTCG
TCAGTGCGCCATACCATGACACCATTCACCGCGCGGGTGGCACCAGTTGT
ACAGTTGACTTGACCTTGGAAAATCCATAAAAATAGAGCGACAACCAATG
CTTTGAAGGACACCACTATACGTAACAACGTACCACAGGCAGACACGATG
GTATAGCAGTATTGAGGGTTCGACATCGTGAAAAAATACTATAATGCAAG
GTGAAGTAGTTGTAATTCTGCACAAGGTCAGATGTGAGCTTGTGTGTTGT
TGTTACTGTTAGTCCAAAAGATTCTGATTCACCCCGATCGTCGCCTGGAT
CAGAACGCGGACGGAAGGATTGTGGCGGCTATCTGCGCGGCTCCAGCGGT
GGTCCTCGCTTCCCATGGACTTCTGGACGGGCATAAAGCCACATGCTACC
CCGCGAGTGCCTTCCAAGGTGATAAAAGTAATACAATGCAATACGACTAT
TGATAGCCGATCAACAACTTTTTGTTGTGGATGATGCTGCTTGTTTAGAC
TGCCCTCCTGACTTCGTTTTTGCTCCGAGGGTTGACTTCCATCGCGAGAG
TTGGTTTGTTATGGATTCCTGGTTAGTCAGTGCATGTGGCTACCTGGTCT
TCGCTTGAGTATGAGGTTTTTGACCGACAGGTAAGATTCTTCCCGCGACG
GAGCGGGTCTGTAAAAATTCTCCCGCTGATTTTCCCGGTGGCGAATGCTT
CATCTGTCGTGTGTAGTCCACCAGTGTCTATCAAAAGACCGGTCGGTTCC
TAGTAAGCTGTGAAGCTTAAGCGGGACTGCGGGATGAGCTTTATTGAACG
TTTTGTGGATCACTGACCAGTGATGCAGCAGTGAGACGAGCTGTTGTCAC
CCGATAGCTCTTACCTCAAGTGGCTTTGTGGCCATGAAAAAAGAAGATCA
AACAAGCAGTTAAACCGCGAGAAATAAGAAATAATCGCTTCTGACTCTTG
AAGAATTGCAACTCAAATTGGTAGTTTTTGTATAGCCCAGCACGGAGCGC
CGGTGTCGGTGCGTATCTTATCTACTTGTACGTACACGAGCGAGGGCAAG
CAATCCAAGGTTCGTGTGCACTCCAGTAGTGCTACCTTGCTCTCCCTCTT
GGTCCTGACTAAGGCGGCGACAACTCACGATGCCCTTCCCTTTTGCTCTC
TTTCCCTCCGACCTCCAAAGCCAAGATTCCGCAGCTAATTGATGAGAAAG
TGGTGGTGGATGGAAATATCATCACAAGTCAAGGGCCTGCGACGTCCATG
GCGTTTTCTCTTCAGGTGGTGTTTCAATATTGTTGGTAGATTCCGGGTAA
TGTATGATCCCTGTTTTAAACTTCAATACCTCCAGTTTTTTTTTTTCGCG
CTGAATTCACTACGCCATTCTCGCAGGACAGTGGTCTTTTTTCACTATAG
TTTTTAAAGGAAGAACAGTGCCATCTAGCGAACGTATGATCAATCATGTA
GGAATTTCTGACCTCCTTATCACATATGTGGTACTTGTGTGTTTCATGTA
GCCGTTACAAAAAAACTATGTGTTTCCCCGTTTTCGCTCTGCAACATGTC
CAAGATAAAAGCTCTCGAAATGGCAACGAAGATACCGACTCTCGTTTGCA
CCTGAGATGCACTAGCCAGACATCTAGAGCTGGTGAAGCATTCTGTCGAC
GTACGATTCGTTATTTGTGGCTAGCAAGTCTATGTTCTGGCCATCACCGA
GTCCGGTTCCTGGAGAGTTAAGCTGTCATCAATTACTGCAAGTTAGTAAA
TACTGCTTTGATGTCTCCCCGATTTTACAGCTCACGTTTTTGCAGGGTAT
GTTAGAGATACCTGTGTATCGCTTGTTGCGTCGCACCTTCTGTTTTTTTC
TTTTAATTTATCGTTTTAGTGATGCCATCGCTCGCTCGTCTACAATGAGG
GTTGGACATAGTGCTGGAAGCCTTTTTTACCCCCGTTTTTGTTGAGGAAT
GAAAGAAATTCGGAGCTAAACATCGGTCTAAATAGACAATGTTTTACAGA
TCAACTTGAAATACAGATGGATTGATGATACGATACGTCAACTGAAGTGT
ACTGCCGGTGTTCCTTGCGATATACTCTCTTGCTCGATGCGCTTGCTGCC
AAACACAAAACTGAAATAAAGTCGGAGAGCCAGGGTAAATAGAGAGCAAG
CTTGAAAATTCTTTTTGTACCGCTTGAAGCAGAAGCAGACCCAGTACACG
CCCACACACACGTGATCAGAGCCTCTCCTCTTTTACTACACTAACGCCTA
TCACCCTTCTCTTTCCGCGTGGGTTTGACCCCTCGGCAGCTGGTCGAGAG
TCTGTTCGGGACCGCAAAGGCGCAAGAAGTAGGGGGTGCTATGCTTGTTG
CGTAGGTGGAGCGACGGATTGGTGGAGAGGTTGTCGTGTAGTTGAGGGAT
CTACAAGCGATCTGTGAAACCGTATAACTAGCACGATGGACTTGCCTGTT
GCTGGTGTAACTTACGAAGGAGAATATACTGGGAATATAATGCAGGGGGC
GGGGGAAGGACAGGCGTGTCTGCACTGGAACTTATCTCATGACAGCATCT
GTATTCTTTGGAGAGTGTTTTCGTTCTTTTTTTGCTTGAATAATCAATGA
ACACTGCGGTAAATGATATCCTCGGTATCGTGTCGATAAATTGTATTGGG
CATATCGGTAACATGGTACGGCAGGGTATTTTGATGTCTTGGTATTTGTG
CGGTGAGTGATATTTATTTTTTCTCCTGCGATACAGTACGGTATGTTACG
GTATTTATATTGTTTTCTCAGTATCGTCCGGTGTGGTATATGTCGGTGCC
CAAGCGCACGATGCACCCATAAAACCTGCGTGGGATATAGTAACGGTATG
ATACGGAGAGTTCCACAAGGAGGCGACTCATCAAGCACCGAGAGCCCATT
CTACCCAGCAAGTGCAACATTCATTCAAAGGCCAAATCCACACCACAGCA
CACCACGCCGCTCGACTGTATTATGATCGCCGCCTCTGCCTGCGTACAAT
GTAGTCAGTATTAGACGCATGTCTATGACGCATGACTACGCATGGTCGTT
GCGACAAAATAAGCAGCACAGTAAATGCTCGTAATTGAAATTCAAGTTCT
TGAAAGTAAGAGGAAACTCTACCCAGAGCAAACTACATAGACAGGCAACA
ACTCGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4049:572..6379-

>mRNA_H-paniculata_contig4049.10473.1 ID=mRNA_H-paniculata_contig4049.10473.1|Name=mRNA_H-paniculata_contig4049.10473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig4049:572..6379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATACCTCGCGTACATGGCGGCGCTGTTAGGGGCCCTTCCTACAGC
CCACGCGTTTTTCGCCGCGACCGTCGGTTTTGTAGCACCGAAAATGTCAT
CGGTGGCCGCCGCCGCCCACTACCCGAGCGCCAGAGCGGTTGCTTGGACG
GGTTTGAGGGGTCTGACGGGTCGCCCCTCGGCGCTGTTCGTGTCAGGCGG
CGCGTCAACGACCGAGATGTCGGCGGCAGCTGCGACGGGCGGTGGAGTGA
AGCGCGTCCTGGTCCCCGTAGCGGACGGAAGCGAGGAGATCGAGAGCGTT
ACGATCATTGACACGCTGGTTCGGGCCGGTGCGGTGGTGACAGTCGCGAG
CGTCGGAGATAGCTTACAGATGGGATACCTCGCGTACATGGCGGCGCTGT
TAGGGGCCCTTCCTACAGCCCACGCGTTTTTCGCCGCGACCGTCGGTTTT
GTAGCACCGAAAATGTCATCGGTGGCCGCCGCCGCCCACTACCCGAGCGC
CAGAGCGGTTGCTTGGACGGGTTTGAGGGGTCTGACGGGTCGCCCCTCGG
CGCTGTTCGTGTCAGGCGGCGCGTCAACGACCGAGATGTCGGCGGCAGCT
GCGACGGGCGGTGGAGTGAAGCGCGTCCTGGTCCCCGTAGCGGACGGAAG
CGAGGAGATCGAGAGCGTTACGATCATTGACACGCTGGTTCGGGCCGGTG
CGGTGGTGACAGTCGCGAGCGTCGGAGATAGCTTACAGGTGACCTGCTCG
AGAGGGGTGAAGATCACAGCGGACTGCAAGATTCACGAGTGTGAAGAACA
CGATTGGGATGCGGTTGTTTGCCCCGGAGGCATGCCCGGCGCCACCAATC
TCAAGGATAACACGACCCTTGAGTCTCTTTTGTGGAAACAGGTGACCTGC
TCGAGAGGGGTGAAGATCACAGCGGACTGCAAGATTCACGAGTGTGAAGA
ACACGATTGGGATGCGGTTGTTTGCCCCGGAGGCATGCCCGGCGCCACCA
ATCTCAAGGATAACACGACCCTTGAGTCTCTTTTGTGGAAACAGAACGCG
GACGGAAGGATTGTGGCGGCTATCTGCGCGGCTCCAGCGGTGGTCCTCGC
TTCCCATGGACTTCTGGACGGGCATAAAGCCACATGCTACCCCGCGAGTG
CCTTCCAAGAACGCGGACGGAAGGATTGTGGCGGCTATCTGCGCGGCTCC
AGCGGTGGTCCTCGCTTCCCATGGACTTCTGGACGGGCATAAAGCCACAT
GCTACCCCGCGAGTGCCTTCCAAGCCAAGATTCCGCAGCTAATTGATGAG
AAAGTGGTGGTGGATGGAAATATCATCACAAGTCAAGGGCCTGCGACGTC
CATGGCGTTTTCTCTTCAGCCAAGATTCCGCAGCTAATTGATGAGAAAGT
GGTGGTGGATGGAAATATCATCACAAGTCAAGGGCCTGCGACGTCCATGG
CGTTTTCTCTTCAGCTGGTCGAGAGTCTGTTCGGGACCGCAAAGGCGCAA
GAAGTAGGGGGTGCTATGCTTGTTGCGTAGCTGGTCGAGAGTCTGTTCGG
GACCGCAAAGGCGCAAGAAGTAGGGGGTGCTATGCTTGTTGCGTAG
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