mRNA_H-paniculata_contig4047.10471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4047.10471.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE) HSP 1 Score: 787 bits (2032), Expect = 9.400e-252 Identity = 613/1479 (41.45%), Postives = 769/1479 (51.99%), Query Frame = 1
Query: 1405 LLRSFDDDWETFGTRGAHPDETWWELETDPAVMDMSSESVPAMGNPAVMDRVGDSEVILARRVGPGEVVKGLSLLPV----SCGDDECLDGSHISSPSPSPSSSIAPSLSCRLVLLTNKAATVCLVCTNPISSPTSSSMSSLPRIPSXXXXXXXXXSSSSYPSRLEGRDRRISEARGSHVQIDIDPMETRCSGGNTRGSSPVRGLGGETEIDLGDWPLRVFLRRSCRFNHDLLRASIMRCFLFALTVDGLEVWTFPSDNISAAEHLEGPWLEEA--GGMSTG------PSPRPCLLHVQRLEMEGMMPRSPARSFVAIGGARPGVVIFPAPDKNQTLSERSSLAFLSWQSAQRLRADGAVDERTLDENVAVF--PPSPPSSQHTFTSAIGSDASSVQWQDTWQSKWTAWRKGVCGVGGGNAGTSSAPPLALVLRLRTPTEAFRLLSAAEERAPCPRLKTVSAAFLAAAEGLHGALMAEVAACWRAAVCSGSRDRTQTASTNCKTEKNKRDAATGVGIETIIPKLAQCWKLQRVAARCALFMAQLCLEEAIRVAAT-TAGGDGIDSISVTAQAYGRACSWLLESDQSLVESFTRLGEAATRILDAVVPFTRPLGDSHWTEVTVEALDRLQESGDEGDDARSPLSLPGSSSLGLEEALSRAMHEHYLLRALGVGANSGIRSATLGSRSPLGPLNPLAPGKVDSPPLENMLTGLVNYLHLRDMKRALQSPVMRDIGVGEPRSMSLAVAVVCASRTPWIACPNALSRAMRALDDQERALTDNSPSLSSSTSDRSSQSRSSSGGLGAARRPASDSRCTNMGGASSVRSMNSKASRREGRRAELIIGGVGDEREXXXXXXXGNDRIAYSFAWIAVARAVLNGYWEAADSTAAS--ARESCRPMLAPGHLDIGGAEDAILQLACERHPVLVAARSGSTGPLAKIMLAAGRSRPLVRALVRLTSCYTAGGRP------FGSHRVGELLQLTGKCFSPTMDPLQALRVLGAPGRQMASRLESLKRASLDAVEGEGSPPIASRQGSFEPLELQGSPFGSVVLDRVEKGEIEAQETAAREFLSRRCAVSLAQANRGTREEERLSEALGAPAAWQASLAQNRALDRAILRHLIAAHLDDLRTLEGPSAVRPQAARQIPVG-----AGFVGSASAVHARNSRPRGGTTCWTDLVVPLLTGCASQRDIGAAEGHLAAIMALVREVTWRGNGGNGS-------GMSPEEASEVVTEAKRRLPAP--TPASPGGLQNKTTKP--TGETMAWGAGGVGVGMQRATWPWPSRGVPLSAVGAIVALAAALPPSGKLLAGVDVILQVSTEVVGAAKAEAAVAAGVAATAALAERGATGARRPPAIAVGGSYTLAEAGAVVNEVSEAAERALLLYVVEYCGRDPQLWASVTSHVKYALLDAGQGSAGGRETLSMDAGAAHRLVSALLRRCGEELGGADLVRALPEGLTLMECLDEVERSL 5724
LLRSFDDDWE TR + E E E P + S S P N V+DR+G +V+LARRVGPGEVVK L L P+ S D +DG +S +V + Y +L VFLR+S RFN+D+L ASI FLF LTV+G+EVWT+PS+N+ + E W E+ G M P PRPCLLHVQ+LE++G++PRSP + V + GA PG+++FP P ++ +LAFL+ Q +RLR+ GA DE + ++ F PPSP T + ++ QD W K AWR G CG+GG A + PLAL LRLR+PT A RLLS AEE + P VS FL+AAEGLH AL EV+A WRA V TAST + A V IETI+P L CW+LQRVAARCA + QL LE A+ A +A GD T AY RACSWLL S + +VESF L + A R+ A GD V + L D+ ++ S L+ L LEE L RAM+E YLL + GV G+ L S P++ G+ S L+++L+GLV+YLH D++R P + + G PR L+ AVV ASR PW CP ALS+A+ ALD+Q++ L +++ SS RS+SG GA S SR T+ GG ++S R G D+R+ ++ + WIAVARA+L+GY E T A R LA A+ ILQLACERHP LVA G GPLA+ +LAAGR +P+V ALV LTSC GGR FG + ELLQL CFSP +DPLQAL V GAPGRQ+A RL+S +RASLD + G I +R G F + + V R E ++ AAR+FLSRRC+ SLA A R +ER+S+ALGAP AW+ASLA+ RALDRA+LR+LI+AHLDDLR+LE +A P+ P +G V + S N R R +T W D +VPLL+G S+ AE H+ AI+ LVRE+T RG N S M+ E A EVVTEAKRRLPA +PAS G + +T WG+GG G G RA WPW R VP SAVGAI+ALAAALPP+GKLLAG+DV+LQV EVV AAKAE+A + A R I A A V EVS AAERALLLY EYCG+DP WASVT HV+ + A Q GG S+DA LV ALL+RCG ELGG LVRALPE L LM+CLDE+ERSL
Sbjct: 82 LLRSFDDDWEAIRTRREYVPEPL-EPEGAPLATEPYSTSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPIHESSSTADSHAVDGG----------------ISAGVV--------------------------------------------AEYAQQLV-----------------------------------------------------VFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQERKWSEDGRFGDMGVPLSSPAHPPPRPCLLHVQKLEVDGVLPRSPVQIMVPLAGATPGLLLFPPP----LAAKGDTLAFLTHQCQRRLRSPGAADE-PIANGISAFCKPPSP-----TTPLSAWPGGNNNLGQDCWSRKLAAWRNGFCGLGGNKATEYTPSPLALFLRLRSPTAAVRLLSVAEECSERPHPAKVSDMFLSAAEGLHNALTFEVSAAWRAGVGLAG-----TASTLAG-HGSSSSVAEQVRIETILPGLVNCWRLQRVAARCASLLGQLLLETALSAAEQGSAEGD-----CATGLAYTRACSWLLASGEPVVESFASLQDVAARVSVA--------GDETELTAVVPSFVSL----DDDEEGNSYLTTAEVPPLDLEELLPRAMYELYLLPSFGVRDTPGVGPPRLALDSSAIPIS--ESGEPQSLSLDDVLSGLVSYLHREDIQRLSLRPGLPSVWDGTPRYTPLSTAVVYASRAPWTECPVALSQALLALDEQDKTLNEST----------SSNIRSNSGSSGA-----SLSRKTSRGGLKRLKSKTRPRHERSGSTGHQKPASSLDDRDPTDD----ETTLSPTQEWIAVARAILSGYLEQMGGTGGQPEAPRQGRSALA--------ADSQILQLACERHPTLVAPLRGGAGPLARDLLAAGRVKPVVAALVTLTSCGDGGGRAGCGEGSFGPQKAPELLQLKDDCFSPKIDPLQALYVFGAPGRQIAERLDSFRRASLD-LSGPFCSTIGARPGLFHDDAYEQN--SEAVDSRPNPSETKSLSAAARDFLSRRCSASLATAALSVRHQERISQALGAPEAWRASLARTRALDRAVLRYLISAHLDDLRSLENSAAGNPKTPDGKPTADTGRSSGSVKTGSDTRTNNHRDREYST-WADAIVPLLSGQVSKAR--GAEEHVDAILRLVREITRRGRSANNSLSDGNRCSMNHEVAEEVVTEAKRRLPATELSPASTGASVDYDGNGHINDDTQPWGSGGEGTGKGRAPWPWGPRAVPASAVGAILALAAALPPAGKLLAGLDVMLQVGEEVVAAAKAESAXXXXXXXXXXXXKGSA---RAGDVIRKDSGLDAGVAVASVEEVSCAAERALLLYAGEYCGKDPDRWASVTEHVRNSR--ASQVREGG----SVDA-PGQDLVRALLQRCGAELGGQALVRALPENLDLMDCLDEIERSL 1368
BLAST of mRNA_H-paniculata_contig4047.10471.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI) HSP 1 Score: 278 bits (712), Expect = 1.100e-74 Identity = 215/526 (40.87%), Postives = 267/526 (50.76%), Query Frame = 1
Query: 1279 RDGVVEGSVLEAEDMVVCVLQGXXXXXXXXXXXXXXXXXXXALLRSFDDDWETFGTRGAHPDETWWELETDPAVMDMSSESVPAMGNPAVMDRVGDSEVILARRVGPGEVVKGLSLLPVSCGDDECLDGSHISSPSPSPSSSIAPSLSCRLVLLTNKAATVCLVCTNPISSPTSSSMSSLPRIPSXXXXXXXXXSSSSYPSRLEGRD-RRISEARGSHVQIDIDPMETRCSGGNTRGSSPVRGL--GGETEIDLGDWPLRVFLRRSCRFNHDLLRASIMRCFLFALTVDGLEVWTFPSDNISAAEHLEGPWLEEA--GGMS---TGP---SPRPCLLHVQRLEMEGMMPRSPARSFVAIGGARPGVVIFPAPDKNQTLSERSSLAFLSWQSAQRLRADGAVDERTLDENVAVFPPSPPSSQHTFTSAIGSDASSVQWQDTWQSKWTAWRKGVCGVGGGNAGTSSAPPLALVLRLRTPTEAFRLLSAAEERAPCPRLKTVSAAFLAAAEGLHGALMAEVAACWRAAV 2823
RDG+VE ++ EAED+VVCVL LLRSFDDDWE TR + E E E+ P + S S+P GN V+DR+G +V+LARRVGPGEVVK L LLP+ D PS + S CR VLLT+K ATVCLV +S SS +L R S + PSR I P+ +RCS T + G+ GG E L VFLR+S RFN+D+L ASI FLF LTV+G+EVWT+PS+N+ + W E+ G M + P SPRPCLLHVQ+LE++G++PRSPAR V +GG PG+++FP P +A PPSP T SA ++V QD W K+ AWR G CG+GG A + PLAL LRLR+PTEA RLLS AEER+ P SA FL+AAEGLH AL EV+A WRAAV
Sbjct: 112 RDGIVERAISEAEDLVVCVLH---PGGEQDDRETESSARPPPLLRSFDDDWEAIRTRREYVPEPL-EPESAPLATEPFSTSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPIHDRVDPWSSEDE-GDPSRDKARSHPVDPCCRFVLLTSKGATVCLVRAALTASEASSMFPALGR-----------SSGRASPSRPRSSSFAXXXXXXXXXXDRKIPPVGSRCSSSTTDSHAVDGGISAGGVAEDSQ---QLVVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQGRKWSEDGRFGDMGVPLSSPAHASPRPCLLHVQKLEVDGVLPRSPARCMVPLGGETPGLLLFPPP-------------------------------------LATKPPSPT----TPLSAWPGGDNNVG-QDFWPRKFAAWRDGFCGLGGSKATEYTPSPLALFLRLRSPTEAVRLLSVAEERSERPHPAKASAMFLSAAEGLHNALTFEVSAAWRAAV 576 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4047.10471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4047.10471.1 >prot_H-paniculata_contig4047.10471.1 ID=prot_H-paniculata_contig4047.10471.1|Name=mRNA_H-paniculata_contig4047.10471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1923bp MFNEADLLPLPGLPPTYGQESPPEMQIETPNGNSCLSKDAAISNTAAKAAback to top mRNA from alignment at H-paniculata_contig4047:3713..13576+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4047.10471.1 ID=mRNA_H-paniculata_contig4047.10471.1|Name=mRNA_H-paniculata_contig4047.10471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9864bp|location=Sequence derived from alignment at H-paniculata_contig4047:3713..13576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4047:3713..13576+ >mRNA_H-paniculata_contig4047.10471.1 ID=mRNA_H-paniculata_contig4047.10471.1|Name=mRNA_H-paniculata_contig4047.10471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11538bp|location=Sequence derived from alignment at H-paniculata_contig4047:3713..13576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |