mRNA_H-paniculata_contig4037.10448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: D8LJZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ9_ECTSI) HSP 1 Score: 144 bits (362), Expect = 8.070e-37 Identity = 97/181 (53.59%), Postives = 110/181 (60.77%), Query Frame = 3
Query: 3 VECDAFVVSP--RWLAKSTAFRRQGMSHCSATPVGTRFLTTVL--GATEDTSSTDQE------EPVTSSPPDV--YYEGLVGGQPINDDDAEVNK-----FTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDDAKYD-GPW 491
V DAFV SP RW + + R + TPV R +T + AT EP S+ P+ YY GL+G QP D K +DYPI LPSYLLL LATV SIAFTGSIFEV G HP+LGYTATYIIGTL+LPTFIFLFYAAIKKG+AEVEEDDAK+ G W
Sbjct: 16 VVSDAFV-SPKARWASAAINTNRH-QARSLTTPVAARVRSTTVRTAATXXXXXXXXXXXXXPAEPAKSAVPEDLDYYSGLIGEQPGADKAPASGKEEAVTTSDYPIPLPSYLLLVLATVVSIAFTGSIFEVTGGHPELGYTATYIIGTLSLPTFIFLFYAAIKKGKAEVEEDDAKFGKGRW 194
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A835YHG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG1_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.710e-23 Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 3
Query: 222 INDDDAEVNKFTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDD 470
IN D + +K YPI+ P+Y LL L+TV +IAF GSIFEV G P LGY TYIIG L+LP FIFLFYAAIKKGQAE EEDD
Sbjct: 50 INLDAKDQDK--SYPIDFPAYGLLSLSTVVAIAFVGSIFEVAGPSPLLGYVPTYIIGALSLPGFIFLFYAAIKKGQAEAEEDD 130
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A6T6GAQ8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6GAQ8_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.810e-12 Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 3
Query: 132 TEDTSSTDQEEPVTSSPPDVYYEGLVGGQPINDDDAEVNKFTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDDAKY 479
T+ + TD P SSPP E T+YP+++PS LLL + + I TG +FE+ G QLG+ AT + +++PT +FLFYA+I K AE EEDD +Y
Sbjct: 89 TKSETPTDVAVPEPSSPPKAVEEPT----------------TEYPLDVPSPLLLASSMILGIIGTGCVFELTGDAEQLGFAATAALTVVSIPTCLFLFYASILKATAETEEDDRRY 188
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A2V3IZS2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZS2_9FLOR) HSP 1 Score: 73.2 bits (178), Expect = 5.250e-12 Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 3
Query: 264 PINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEED 467
PIN PS +LL ++V +IA G +FE+ G HP G+ T I T++LP+F+FLFYAAIKKGQ E ED
Sbjct: 58 PINAPSGVLLLSSSVLAIAAIGCVFELTGGHPTYGFNVTAGILTVSLPSFLFLFYAAIKKGQIEALED 125
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A7S0BY63_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY63_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.110e-11 Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 3
Query: 225 NDDDAEVNKFTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDDAKYD 482
ND+D++ + P+N+PS LLL + + +IA GS+F++ G PQLG+ T I T+ ++ FY AI KG +E EEDD K++
Sbjct: 39 NDEDSDSKPQLNVPLNIPSPLLLGSSMILAIAGVGSMFDIAGGSPQLGFPLTESIATVGTTISLYFFYCAILKGISETEEDDEKFN 124
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A7S2P364_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P364_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.140e-11 Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query: 240 EVNKFTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDDAKY 479
E + YPI+LPS +LL + V +I+ GS+FE+ G P+LG+ T I L LP +FL YAAI KG AE EE D ++
Sbjct: 34 EEEELQAYPIDLPSPILLATSMVLAISSIGSLFELAGGTPKLGFAVTAAITALGLPISVFLIYAAILKGSAETEEADREF 113
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A7S4JDB9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JDB9_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.350e-11 Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query: 258 DYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDDAKY 479
+YP+N+PS LLL + + +IA GSIFE+ G +P G T I + LPT +FLFYAAI KG AE EEDD +
Sbjct: 89 NYPLNVPSPLLLGSSMILAIASIGSIFELSGGNPSNGVGPTAAIAAIGLPTCLFLFYAAIMKGIAETEEDDKAF 162
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: M2XU10_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XU10_GALSU) HSP 1 Score: 68.9 bits (167), Expect = 2.920e-10 Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 3
Query: 264 PINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAE 455
P+N+PS +LL ++ V +IAF GSIFE+ HPQ G T +I +LP+F+FLFYAAI+KG+ E
Sbjct: 81 PLNVPSGILLGVSCVLAIAFVGSIFELSSGHPQYGRELTSVILVSSLPSFLFLFYAAIQKGKDE 144
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A7S2XVJ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ4_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.460e-9 Identity = 52/153 (33.99%), Postives = 74/153 (48.37%), Query Frame = 3
Query: 48 STAFRRQGMSHCSATPVGT-------RFLTTVLGATEDTSSTDQ-----EEPVTSSPPDVYYEGLVGGQPINDDDAEVNKFTDYPINLPSYLLLCLATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEEDD 470
S RQG+ P GT R TV+ +TED + EEP P Y EG + P+ + LP+YL L ++ V +IAF G+IFEV G P LG+ T+ I + P F++LFY ++K+GQ E +ED+
Sbjct: 58 SQIINRQGLK----VPTGTMKLRQLQRSSKTVIFSTEDEKMAAEVKKIFEEPPKQVPKPNYEEGGLPMIPM--------------LPLPAYLYLVVSCVVAIAFIGTIFEVSGGKPLLGFPLTWAIMVASGPGFLYLFYCSLKRGQIEEKEDN 192
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Match: A0A1X6PBI0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBI0_PORUM) HSP 1 Score: 55.5 bits (132), Expect = 1.500e-5 Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 3
Query: 300 ATVGSIAFTGSIFEVIGKHPQLGYTATYIIGTLALPTFIFLFYAAIKKGQAEVEE 464
++V +IA G +FE+ PQ G T I T+ +P F+FLFYAAIKKGQAE E
Sbjct: 100 SSVAAIASIGCVFELSSGKPQYGVQLTTAILTVCVPGFLFLFYAAIKKGQAEERE 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4037.10448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4037.10448.1 >prot_H-paniculata_contig4037.10448.1 ID=prot_H-paniculata_contig4037.10448.1|Name=mRNA_H-paniculata_contig4037.10448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp MSHCSATPVGTRFLTTVLGATEDTSSTDQEEPVTSSPPDVYYEGLVGGQPback to top mRNA from alignment at H-paniculata_contig4037:9320..12284+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4037.10448.1 ID=mRNA_H-paniculata_contig4037.10448.1|Name=mRNA_H-paniculata_contig4037.10448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2965bp|location=Sequence derived from alignment at H-paniculata_contig4037:9320..12284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4037:9320..12284+ >mRNA_H-paniculata_contig4037.10448.1 ID=mRNA_H-paniculata_contig4037.10448.1|Name=mRNA_H-paniculata_contig4037.10448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig4037:9320..12284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |