mRNA_H-paniculata_contig40333.10443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40333.10443.1
Unique NamemRNA_H-paniculata_contig40333.10443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5JR26_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR26_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.570e-37
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCN-RAPPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN+T+V TINAAGA + P   +KGQR    WV +   PPG +Y  T+SSFM   V++ +++ F + +    L DG+PHVLVLD HASHV+++V+K A+  N HL QLPSH SHITQPLDV  FG
Sbjct:  139 ENVTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGDVFIKYIQNFHKQLGERNLLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFG 262          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.310e-36
Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCN-RAPPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN T+V TINAAGA + P   +KGQR    WV +   PPG +Y  T+SSFM   V++ ++K F + + +  L DG+PHVLVLD HASHVT++V+K A+  N HL QLPSH SHITQPLDV  FG
Sbjct:  215 ENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFG 338          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.650e-36
Identity = 69/124 (55.65%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN TVV TI+A GA   P   ++GQR+Q  W   R  P    Y  TDSSFMQ  V++ + K F + +D+ G+ DG+PH LVLDEHAS+V+  V+K AME N  LFQLPSH+SHITQPLDV AFG
Sbjct:   21 ENTTVVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFG 144          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.490e-36
Identity = 70/124 (56.45%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN TVV TI+A GA   P   +KGQR+Q  W   R  P    Y  TDSSFMQ  V++ ++K F + +D+ G+ DG+PH LVLD HASHV+  V+K AME N  LFQLPSH+SHITQPLDV AFG
Sbjct:  195 ENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFG 318          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5L108_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L108_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 6.380e-36
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAF 366
            EN TVV TI+A GA   P   +KGQRVQ  W   R  P    Y  TDSSF+Q  V++ ++K F + +D  G+ +G+PHVLV D HASHV+  V+K AME N  LFQLPSH+SHITQPLDV AF
Sbjct:   82 ENTTVVTTISANGATWAPTIIFKGQRVQPDWFAERNGPKDARYTCTDSSFVQGDVFIKYLKDFHKQLDGRGVLEGKPHVLVHDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAF 204          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5JRL2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.300e-35
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCN-RAPPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN T++ TINAAGA + P F +KGQR    WV +   PPG +   T+SSFM   V++ ++K F + + +  L DG+PHVLVLD H SHV+++V+K  +  N HL QLPSH SHITQPLDV  FG
Sbjct:   60 ENCTIITTINAAGAVLAPTFIFKGQRFNGDWVADLNGPPGAFNDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHTSHVSLDVIKLVISLNIHLVQLPSHMSHITQPLDVAGFG 183          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5JR11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR11_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.740e-35
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN T+V TINAAGA + P   +KG R    W+ +R  PPG  Y  T+SSFM   V++ ++K F E +    L DG+PHVLVLD HASHV+  V++ A   N HL QLPSH SH+TQPLDV  FG
Sbjct:  137 ENCTIVTTINAAGAVLDPTVIFKGVRFNQDWIADRNGPPGATYTCTESSFMCGDVFIKYIKNFHEQLRRRNLLDGKPHVLVLDGHASHVSFEVIQLAKSLNIHLVQLPSHMSHVTQPLDVAGFG 260          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.290e-35
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN TVV TI+A GA   P   +KGQR+Q  W   R  P    Y  TDSSFMQ  V++ ++K F + +D+ G+ DG+PH+LVLD HASHV+   +K AM+ N  LF+LPSH+SHITQPLDV AFG
Sbjct:   21 ENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFG 144          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 5.240e-35
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN+TVV TI+ AGA + P   YKGQR+QA WV  R  PP    AVTDSSFMQ   ++++++ F   + +  L +G PHVL LD HASHVT  V+K A E N  L+Q+PSHSSH+ QPLDV +FG
Sbjct:   21 ENVTVVVTISTAGATLAPWIIYKGQRLQADWVEGRNGPPNARLAVTDSSFMQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFG 144          
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.300e-35
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 ENMTVVATINAAGAKMPPLFSYKGQRVQAAWVCNR-APPGLWYAVTDSSFMQEPVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTHLFQLPSHSSHITQPLDVCAFG 369
            EN+TVV TI+AAGA + P   YKGQR+QA WV  R  PP    AV DSSFMQ  V++++++ F   + + GL +G PHVLVLD HASHVT  V+K A + N  L+Q+PSHSSH+ QPLDV +FG
Sbjct:  201 ENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFG 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40333.10443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR26_9PHAE4.570e-3753.23DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JYX7_9PHAE1.310e-3654.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B8_9PHAE2.650e-3655.65DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JBS6_9PHAE3.490e-3656.45DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L108_9PHAE6.380e-3655.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JRL2_9PHAE1.300e-3551.61DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JR11_9PHAE1.740e-3552.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGL1_9PHAE3.290e-3554.03DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K717_9PHAE5.240e-3554.03DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L5E2_9PHAE8.300e-3555.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40333contigH-paniculata_contig40333:737..1105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score93.6
Seed ortholog evalue6.8e-17
Seed eggNOG ortholog7029.ACYPI47057-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs3A3P5@33154,3BQDY@33208,KOG3105@1,KOG3105@2759
COG Functional cat.B
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.9534101-CDS-H-paniculata_contig40333:736..10991622930234.9534101-CDS-H-paniculata_contig40333:736..1099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40333 737..1099 -
1691481203.2977066-CDS-H-paniculata_contig40333:736..10991691481203.2977066-CDS-H-paniculata_contig40333:736..1099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40333 737..1099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.966732-UTR-H-paniculata_contig40333:1099..11051622930234.966732-UTR-H-paniculata_contig40333:1099..1105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40333 1100..1105 -
1691481203.307686-UTR-H-paniculata_contig40333:1099..11051691481203.307686-UTR-H-paniculata_contig40333:1099..1105Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40333 1100..1105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40333.10443.1prot_H-paniculata_contig40333.10443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40333 737..1099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40333.10443.1

>prot_H-paniculata_contig40333.10443.1 ID=prot_H-paniculata_contig40333.10443.1|Name=mRNA_H-paniculata_contig40333.10443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MTVVATINAAGAKMPPLFSYKGQRVQAAWVCNRAPPGLWYAVTDSSFMQE
PVYLSFMKKFKEFIDNNGLNDGRPHVLVLDEHASHVTINVLKYAMEHNTH
LFQLPSHSSHITQPLDVCAFG
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mRNA from alignment at H-paniculata_contig40333:737..1105-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40333.10443.1 ID=mRNA_H-paniculata_contig40333.10443.1|Name=mRNA_H-paniculata_contig40333.10443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig40333:737..1105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATATGACAGTTGTGGCAACGATCAACGCAGCCGGCGCCAAGATGCC TCCGTTGTTCAGCTACAAGGGACAGCGGGTGCAGGCGGCCTGGGTCTGTA ACCGCGCCCCCCCCGGTTTGTGGTACGCCGTGACTGACTCCTCGTTCATG CAAGAGCCAGTCTATCTCAGCTTCATGAAGAAATTCAAGGAGTTCATCGA CAACAATGGTCTGAATGACGGCAGGCCCCACGTCCTTGTCCTCGACGAGC ACGCTTCACATGTTACCATCAACGTGTTGAAGTACGCCATGGAGCACAAC ACCCACCTGTTCCAGCTACCGTCACACTCCTCTCACATTACGCAACCCTT GGACGTGTGCGCGTTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig40333:737..1105-

>mRNA_H-paniculata_contig40333.10443.1 ID=mRNA_H-paniculata_contig40333.10443.1|Name=mRNA_H-paniculata_contig40333.10443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig40333:737..1105- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGTTGTGGCAACGATCAACGCAGCCGGCGCCAAGATGCCTCCGTT
GTTCAGCTACAAGGGACAGCGGGTGCAGGCGGCCTGGGTCTGTAACCGCG
CCCCCCCCGGTTTGTGGTACGCCGTGACTGACTCCTCGTTCATGCAAGAG
CCAGTCTATCTCAGCTTCATGAAGAAATTCAAGGAGTTCATCGACAACAA
TGGTCTGAATGACGGCAGGCCCCACGTCCTTGTCCTCGACGAGCACGCTT
CACATGTTACCATCAACGTGTTGAAGTACGCCATGGAGCACAACACCCAC
CTGTTCCAGCTACCGTCACACTCCTCTCACATTACGCAACCCTTGGACGT
GTGCGCGTTCGGTATGACAGTTGTGGCAACGATCAACGCAGCCGGCGCCA
AGATGCCTCCGTTGTTCAGCTACAAGGGACAGCGGGTGCAGGCGGCCTGG
GTCTGTAACCGCGCCCCCCCCGGTTTGTGGTACGCCGTGACTGACTCCTC
GTTCATGCAAGAGCCAGTCTATCTCAGCTTCATGAAGAAATTCAAGGAGT
TCATCGACAACAATGGTCTGAATGACGGCAGGCCCCACGTCCTTGTCCTC
GACGAGCACGCTTCACATGTTACCATCAACGTGTTGAAGTACGCCATGGA
GCACAACACCCACCTGTTCCAGCTACCGTCACACTCCTCTCACATTACGC
AACCCTTGGACGTGTGCGCGTTCGGT
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