mRNA_H-paniculata_contig4031.10440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4031.10440.1
Unique NamemRNA_H-paniculata_contig4031.10440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4031.10440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4031contigH-paniculata_contig4031:27..5433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size575
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4031.10440.1prot_H-paniculata_contig4031.10440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4031 142..501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.7013721-UTR-H-paniculata_contig4031:26..1411622930234.7013721-UTR-H-paniculata_contig4031:26..141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 27..141 -
1691481203.153687-UTR-H-paniculata_contig4031:26..1411691481203.153687-UTR-H-paniculata_contig4031:26..141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 27..141 -
1622930234.7275012-UTR-H-paniculata_contig4031:501..5071622930234.7275012-UTR-H-paniculata_contig4031:501..507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 502..507 -
1691481203.17651-UTR-H-paniculata_contig4031:501..5071691481203.17651-UTR-H-paniculata_contig4031:501..507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 502..507 -
1622930234.7430427-UTR-H-paniculata_contig4031:5339..54331622930234.7430427-UTR-H-paniculata_contig4031:5339..5433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 5340..5433 -
1691481203.1865106-UTR-H-paniculata_contig4031:5339..54331691481203.1865106-UTR-H-paniculata_contig4031:5339..5433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4031 5340..5433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.716072-CDS-H-paniculata_contig4031:141..5011622930234.716072-CDS-H-paniculata_contig4031:141..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4031 142..501 -
1691481203.164889-CDS-H-paniculata_contig4031:141..5011691481203.164889-CDS-H-paniculata_contig4031:141..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4031 142..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4031.10440.1

>prot_H-paniculata_contig4031.10440.1 ID=prot_H-paniculata_contig4031.10440.1|Name=mRNA_H-paniculata_contig4031.10440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MGIRHSQDPHGSTAFPAARKYTPGEEESGVGSCVSLQRQRQREHVSNPAE
IAGTTSDEKISATVSLPVIQEGPSGQREATLAIPTSDPDGRYRVLAVASL
AVVLALSTWFSATAVRSAL*
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mRNA from alignment at H-paniculata_contig4031:27..5433-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4031.10440.1 ID=mRNA_H-paniculata_contig4031.10440.1|Name=mRNA_H-paniculata_contig4031.10440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5407bp|location=Sequence derived from alignment at H-paniculata_contig4031:27..5433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGGTTGCAACCAAGCGCAACACAGGTGACACTTGCGTTGCACGAAAC
GTAACGCATATACTGGCACATTCCACGTTGCTTCTACAAAGTAGGTGAGG
TTGGGTCTTAGGAGGTTCGTCGGTAGTCTGCGCGTTAACAGACGTGCTCA
ATGAGCGCATGCTTGCGGAGCAAGCCACTGTGCGCCCGGCGGTCTCCGTC
ATACGCAGAGGGATGTAAGATATCAAACGAACTTACACAGTCAATCCCGA
GAATACCAAGACGCGTCCTTGTGTAGCAGTAGTAATTTACCGGTATTGTA
GCATCATCAACTTTTGTTAATATGGGAAGAATTGAAGTACAGAGAGCACT
GAAATATACGCGAAGAATGTAAATTATATCGTTTTTTGCCACATGACGAA
ATCGGCCACATGAATACACCACGTGAATTATTTGAAGAAGAATTGTTGAA
ACGACAGTCAGTGTACTGTACTCTCTGTGCTCAGCTGCAACCACACACAA
ATCGTCAGTTTGCAGCTTGCGCGACGGTGGGATCAAACTGTCTTCCATTG
TCTGTTGTGTAAACTGCTTTGTGGTGTACTGTCTGCTGATGAGCTTTTAC
ATGTTCCCCCTTTGTGGTGTACCCCTGTCGCATGGCGAACCACACATCGA
TTCGCTGCCTCGCTTGGTCGCTACAACCTGGCCCTGATAACTACACCTTT
CCATCACAATGGCTATTAACTTGTGAGAAGACACTAATTTGTATTCCGCG
GTGCAAAAAATCTTGTGGGGAAGCAAAAATTTACATAAATGATCAAATTT
GAAAACATCCAATTCAAAAATCCAATTACCAACTCTTGTTGGACATTTTC
GATGTGATTTTTTAGAAAAAAATCCTATCCGGGCAAAACACACCCCAGCT
CACTTGAAATTTTTCTAAACTTCCACATGAGGTTTGACGCGATTGGAAAC
TTTGTAGCGGTAGAGTATGACTCCATGCACCGGCGTCATCATGCGAGCAC
CTACAGTACAGTACAGTACAGTACACTACACTACACTACACTACAGTACA
CTACACTACACTACACTACTGTACAGTACACTACACTACACTACACTACA
CTACACTACACTACACTACACTACACTACACTACACTACAGTACTGTACA
GTACAGTACAGTACAGTACAGTACACTACACTACACTACACTACACTACA
CTACACTACACTACACTACACTACACTACACTACACTACACTACACTACA
CTACACTACACTACACTACACTACACTACCGTGCGCTTGTACCCTCGACG
GAGCACACACCCTGTCTGCGATAATGCCAGTGAGGGGGGATAAGTATGAA
TCCTCCTCCGACGAGGACGAAATGCAGCTGGCTGTATGCCAAGCACAACT
AAATGAGTTAGTTCCACCTGATGGATGCAGCTGTGCAACTGTTTCTGAAC
GACGTCGGGGCGGCGTTTTTCTTTTCTAGTCGTGCCTGGTAAAATCTTTT
TAAGCTGCGTATTGCATATCCCGCCCAATTTTAAACTAAAGGACCATGGC
ATTACAATCTTTACTCCTTGCGGTCACAACCGCCTTCCCAAGTTTGGAGC
GTATCAACAAAAATCCATATGTCCCATAAGACGTGGTGATGCGATTCTTA
AATTGTACATTTCTTACTTGGATTTTGGTGAAAATCAAGTTTTCAATTTC
AATTTTTCGATTCCGATAAGAATTGGCATAAGGCCGTGCCTCACGGAGGC
ACTGAGAAAACTGTTTTTTTTCATTTTGAGAAAATGGAATTACTCTGTGA
TTGGTCGAGTGAATCTGTGGCCAATCGTAGAGTTTTCTCGTCTTCTTACT
CACTATTTCACCTCGTCTTTTGAAAAGCCCCCGAGACTTTTCACAAAACG
AAATGGTAAGCGAATATGCCTGTGACTGGAACAATTGAAGAACATAGAGA
CCAAGGGTCCGACGTGTCGACCAAAGATGGTGAATTGCGAACGGGTAACA
ATCGAATGCAGCACTACCCTCGTGAGAGTGACAGCTTCACTACCCCCGGA
AGAGCAAAACGTATTCAGGCCATTGCTCTTGATGAACTGAGCTTCATGTA
CCTGGTTTGTGTAGAATTAGTTCAGATATGAAGGTGAAGAACTGTTTGTC
GTGGGCGCGAGGGCAAGCCAAACACAGATAAACAGGCAATAATGACCCTT
TTGTAATTGCAGCTGGAAGTGAAATGCTGCGGCTCCCCCAACACAAAACG
GATTCGTACCAAATAAAGGCTGGCGTGTCCAGCTGAACAAGGTCTGTCGT
CCGAACGAATGTGCCTGTACTTCGTCTCTGTGTTTGTGTTGCTTTGGGAC
GGTTTGCGGCTCTGGTGTTTCCCAAGCCATCTCCATTTTGCGGCGTGGTC
ATTGAACATTTGTAACGGCCATGTTCAGAACAAACCTCGACATCTGCAGA
AGCAGTTCGTTTGCTCAATACGACTCAAAACGAGATATTCGGAGACCATT
TTTTGTTTTTTCAGTTCTTCGATAAGACGGCCTAAAAACAACGCGGTAGA
AAAATGTCTGATGTGCGGTATCTTCTTCCGTTCAACAATCACAAAACCCT
TCGAACAATGACAGAGCTTCTCCAATTTTCGTTATTTTTCTAGTTTCACT
TTTCATTTTCTTGGTAAGACACCGTTTAAGATCCAGCTGACACGAGGGTG
AAGACGCAGTGTGGGACAAAGGGCGATGTCACGTTCCCTTGGTGCGATGC
CGTGTCCCTTTAGCGCGCTGTCATGTCTCTTTCGTGCGAGATCGCAAAAC
AAGAATCACATACTGTGCAGTCGTCACGCCCCGCTTTCTAACGTGGTACC
GTAAAACTGACAGCAGGGCGAGCACACACCGCCTCGCCTACACACCTAAG
TCCGCAAACACATAAATATTGAAGCAATGGCACGGGACACCGTGGCCTAC
TATGCAAACGAACTAATGGACGTGAAGTGTTCACTTACAAGGCCCATAAT
TTGAAATGGCCCACGTGTACAACTCCGCATGTAAAGTGTAACTAACCGAC
TCTATCTGGCACCAGTCGTAGCACTGGCCATAAAATCCCTCAATAATATT
CCTTCCGGTGTATGTCTACCGTGTATTGTTTTGCCAGGAGGTGTCCGCTC
GCGGCCCTCCCAACAGCCAACAACACAAAGCAAATAGATAAGCGATGCGC
ATCTTTAAAGTGAAGCATAATCTGACGAGAACGGGCAGACTGGCCATGTG
TGCACGTTGATCGGTGCTCTCTGGCATGTCGCGAATCATCGCGTCAACAT
GATCTATTACAAGCAAATCATTCTTCTCTTCTTTTAAATGTTTTTCTTTG
CGTTGTGTTTGTCTCTGCCCTAGTTAGTTGTGTATGGCTGGTTGTTGGGA
GGGTCGCACGCCGACCCTTCCCCATAAAGAATATAGGTGGTAGAGGAACC
CCCGAAGGAATCCTCACGGAATTGCAACACTCCAGGCTTATTTCAGCCAG
TGCAAGAACCTTCTCTCCCTGGGGTCAGCAGTCATCGTGACTACTGGCAA
GCCCCTGCCAGATGAGTGCTTGACGAACCGCAAATCTATTCGTTCATGCA
CACCTTGGATAGAAAAATGTCTAGTCCGCTGACAGCAAATCGTACGCAAC
GCCAGGTTTGCCAAGACAACGTAGTATTGCACATGCCGTACATCCGCTCA
GGCGCGCGAAAGGAAAAAAATGATACCCACCAACTACTTTCAGCATGTGC
CGATTGACTCCTGTTAGTAGTTTGAACAGGAGCACACGAGCACGTAGTGA
AGCCGTGGTTTATCCAGACACCACGATTCCGAATCATGCAAACAAGCTCC
CTGCGCACCAAAGATCCGGATAACGTGGTGAGGATGCCACCATGCCGAAC
CACCATCAAGCGCGACGCTCACTTGCGCTTGCATAGGGTAGCTGGTTTGC
GTTCCTTGTCGTTTGCTTTGTATTGGCAATAGCGGAAACAAGGGGTCCGC
TACTGGTGGCGAATTAATCATTTCCTAAAAAATTGGGAGCGACAGAAAGA
AAACAAAAATATAATTGAGAAAAATAGAGAGGAAAGAGAGATAAAAAACG
TTCGTAGCGACTCCACAGGTTATATTCGTAGCCCCCTACATGTTGCGAGG
TGCCCCCGCGGTATGGTATCGATTTTGCGTCACGTTTTCGGCGTAATACA
CAATTCGTGCACTTTCGAAAATAACGCACCTGTGTACGTTGTTTTTACGA
CATGTTGCGACAAGGCATCTCCCACGACTTCTTTCTCGGTTACTGCGTTG
CACCGAAATATTCCACAACAAATTGACTTTCAGAAACTATCACACGAGGC
GTTTTTCTCCGTCAGGTCACCTACAGTTTATTTCGCTTCGTTGTCACGCG
TAAGTCCATCAATTGAATAGGACCCGTGATTCACGTACTGAGTCGCACCG
TGATCGCAGCAGTACAAGTCGATATACCCAACAATATGGGCTTGATTTTT
ATGAGGGTTTCCACGTCAGCGATTCAGTTTGCATAATTCCTTAGTTTAAT
CGAGCATGCACAGGTGTTAGGTGCCGCTATCTGGTTAGTCCCTTTCTCGA
ATCACTCCCCGGCACAGTGTCCAGCGAAGAAGTTCTGCAGTAGCAGCAGT
GGTACCGTGCTGTTAGTTCGGCGTCATCCTTGAGTTGGAAAATGCTTTGC
TCGCAGTCGAACAAACAGACTTTGCTGATTGTTCGCTCGTTTGTGTTGGG
ATAACTTTTGTTCAACACTTTTGATGGCAGCCAGCCAAGACATGTGCAGG
TTTCGCCTGCTAAGTTTTCTCTCACGGTGGGCAGCTAACGAAGTCACAGA
TACTGTCGATGGCTGTTGATCGCTTAAACACACCTTCTCTCCGTTTGTTG
GCATATCTTTATCTCCAACAATACAGCGCATAATGGGTATCCGCCACTCC
CAGGACCCACACGGCTCCACAGCTTTCCCTGCAGCACGGAAGTATACACC
TGGTGAAGAAGAGAGTGGCGTTGGTTCATGCGTCTCGTTGCAAAGGCAAC
GACAGCGTGAGCATGTTAGCAACCCCGCCGAAATCGCAGGAACGACCAGC
GATGAGAAAATCTCGGCAACGGTAAGCTTACCAGTGATACAAGAGGGACC
TTCTGGCCAGAGAGAAGCAACCCTTGCCATTCCTACCTCTGATCCAGATG
GACGATATCGAGTGCTCGCCGTTGCTTCGCTGGCAGTGGTTCTTGCACTA
TCGACGTGGTTCAGCGCAACGGCAGTAAGGTCAGCTCTGTAGCCGTCGTA
ACCGTCGATTTAGTATAGTGTTGATGCTTTGGAGACTCTCCCCTGTGTTG
TCCAGGCCTAAAGACTTGTATGCGTTACTATCGTTCGCGCAGCTCCAAAG
AGGTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4031:27..5433-

>mRNA_H-paniculata_contig4031.10440.1 ID=mRNA_H-paniculata_contig4031.10440.1|Name=mRNA_H-paniculata_contig4031.10440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig4031:27..5433- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTATCCGCCACTCCCAGGACCCACACGGCTCCACAGCTTTCCCTGC
AGCACGGAAGTATACACCTGGTGAAGAAGAGAGTGGCGTTGGTTCATGCG
TCTCGTTGCAAAGGCAACGACAGCGTGAGCATGTTAGCAACCCCGCCGAA
ATCGCAGGAACGACCAGCGATGAGAAAATCTCGGCAACGGTAAGCTTACC
AGTGATACAAGAGGGACCTTCTGGCCAGAGAGAAGCAACCCTTGCCATTC
CTACCTCTGATCCAGATGGACGATATCGAGTGCTCGCCGTTGCTTCGCTG
GCAGTGGTTCTTGCACTATCGACGTGGTTCAGCGCAACGGCAGTAAGGTC
AGCTCTGTAGATGGGTATCCGCCACTCCCAGGACCCACACGGCTCCACAG
CTTTCCCTGCAGCACGGAAGTATACACCTGGTGAAGAAGAGAGTGGCGTT
GGTTCATGCGTCTCGTTGCAAAGGCAACGACAGCGTGAGCATGTTAGCAA
CCCCGCCGAAATCGCAGGAACGACCAGCGATGAGAAAATCTCGGCAACGG
TAAGCTTACCAGTGATACAAGAGGGACCTTCTGGCCAGAGAGAAGCAACC
CTTGCCATTCCTACCTCTGATCCAGATGGACGATATCGAGTGCTCGCCGT
TGCTTCGCTGGCAGTGGTTCTTGCACTATCGACGTGGTTCAGCGCAACGG
CAGTAAGGTCAGCTCTGTAG
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