mRNA_H-paniculata_contig403.10436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig403.10436.1 vs. uniprot
Match: A0A6H5K2N6_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N6_9PHAE) HSP 1 Score: 328 bits (842), Expect = 3.880e-86 Identity = 373/982 (37.98%), Postives = 477/982 (48.57%), Query Frame = 1
Query: 6112 LQREYDMAQEELGATRSVVDAADGRVMALTEEIESLRRARXXXXXXXXELQLELAAEKLAGTVLGGDRRGVTAWRAARGGKEAS-----FVQWKMACIDARQKKLGLEAELLAHKAENYEGLVKRLSEELEQQGAVVNRHADVLHEKDLEVQRALERASRAQQELITMEPPTLAQADDGLEVLLRVSSTDAAAVAEEASMVGADESGVIGEAVASCSAAEAAVGPRVWCLVRYHRKPLGTTLPRGGANRDDDASEERSGKEHDVASAERGQENANSVAVAVAGRDGDRVGGDEECGQGIAEVQGEHAAAGDDGVDRGCDTSPNKPAFTSSSRVEAAEGDDHEAPAPAASVVAGDTEGETGKDGEVTLEEGEDERRHPGNAPASTIIEETSQGAAATGATPEAINVDEVQXXXXXXXXVVVEWRLQEEVDEWFARQVAQAVESSSTVENTAY------GGEAAGALGDLMEAVPTPAPAAPEAKPPTLPMLDMPMTVQERFAVELRRLRDDREGQLEEARAELSRNTEAYQQYRARAHTTINTTIKKSADTQRALEARIAQCQAELATAREEFRRTREEGASAEVRWGQEAATLAQRIQDLEALVEAEQIRAAEVEAGVARSVEQGLHAAREEVAVVQQRLEAETA-ALEATRRTLSSARTELEKNKREMIQIRQRARTLIAEKDVILNRLTSGGGGENXXXXXXXXXXXAGRSTMDTGSSTHGAGNVIAANGHPALSPGLTPGGFTHGDGSPSVAAAVSGVPPPVGPDGGSSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXVVGVAGGNAMVDSHH----------------------------AEQQILQMARVQAQRDEETGRLRQKIQKLLEEISKRDRRLSAXXXXXXXXXXXXXELRGEAKRARELLDAEHGSQKLTYLKNVVIGFITSKVIQERKALVAVLAEILSFTEEEKAEVNLAVETAARVGKSSWWG*VFG 8937
L++E + A+EE+ TRS V+A DGRV++L+EE+++LR +R ELQLELA EKL G R G+ G + F +W++A ++ RQ + E+E KAE+YE LV+RLSEELE+QG VVNR+A +L E++ ++ AL+RA+RA ELI+MEPP+L+QA DG+++LLRVS+T AA E++++ G D A A + EA P+VWCLVRY G G+ V+GE K A PA XXXXXX VVEWR QE+VDEWFA QVA+A+E + GG AAGA+ + AP A P LP+L+ PMT+Q+ F EL R+R D E +LEEARAEL+RNTEAY+QYRARAHT I K S +QR EARIAQ ELA +E RR E+ +AE RW +E+A L Q+I +LEA V+ R AEVEA +A SVE+G+ AA+EE A + RLE E A A R L++AR++L+K KRE+ Q Q AR L+AEKD +NRL SG AG M ++ G G V AA+G L+ XXXXXXXXXXXXXXXXXXXXXXXXX AEQQILQMARVQAQRDEETGRLR KI++L +EI R+ L+AXX +L+GEA RA+ELLD G +K+TYLKNVV F+ S ER+ LV V+A ILSF+ E +EV AV AA G +SW G VFG
Sbjct: 2283 LRQELESAREEVATTRSAVEAGDGRVVSLSEEVQALRASRNGLDRRRVELQLELAGEKLKNAFGVGGRSGLGLGLGPEFGADLGVAGEVFQRWRLAFLEGRQGTMKSESEENRGKAESYESLVQRLSEELERQGEVVNRYASLLLEREEQLDAALDRAARAHDELISMEPPSLSQAVDGVKILLRVSTT--AAAGEQSAVTGDDA-----PAAAVAAGGEADAAPQVWCLVRYAIASXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXGGTPRGNVSSSGNDQPVEGEEXXXXXXXXXXXXXXXXQKDA-------------------PATDXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEVVEWRTQEDVDEWFAAQVARAIEVADEQXXXXXXXXXVDGGPAAGAMDTTVVNA-----QAPVAVAPVLPVLETPMTLQQSFGAELSRVRGDLEAKLEEARAELTRNTEAYKQYRARAHTAI----KNSGASQRDTEARIAQAHKELAAEQEAMRRAHEDRTAAEARWAEESAVLKQQIAELEARVKTAAARTAEVEANIAGSVEEGVRAAKEETAEAR-RLEEEGAKAXGELREALAAARSDLDKTKRELKQRGQLARNLLAEKDAEINRLRSG---------------EAGGGLMHLHANGDG-GAVGAASGSAVDGTALSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQILQMARVQAQRDEETGRLRVKIKRLADEIRAREEELAAXXEEKEGLRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGT-ERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATSW-GSVFG 3199
BLAST of mRNA_H-paniculata_contig403.10436.1 vs. uniprot
Match: D8LEJ5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ5_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.340e-65 Identity = 306/974 (31.42%), Postives = 395/974 (40.55%), Query Frame = 1
Query: 6160 SVVDAADGRVMALTEEIESLRRARXXXXXXXXELQLELAAEKLAGTVLGGDRRGVTAWRAARGGKEAS-----FVQWKMACIDARQKKLGLEAELLAHKAENYEGLVKRLSEELEQQGAVVNRHADVLHEKDLEVQRALERASRAQQELITMEPPTLAQADDGLEVLLRVSSTDAAAVAEEASMVGADESGVIGEAVASCSAAEAAVGPRVWCLVRY---------------------------------------HRKPLGTTLPRGG--ANRDDDASEERSGKEHDVASAERGQENANSVAVAVAGRDGDRVGGDEECGQGIAEVQGEHAAAGDDGVDRGCDTSPNKPAFTSSSRVEAAEGDDHEAPAPAASVVAGDTEGETGKDGEVTLEEGEDERRHPGNAPASTIIEETSQGAAATGATPEAINVDEVQXXXXXXXXVVVEWRLQEEVDEWFARQVAQAVESSSTVENTAY--GGEAAGALGDLMEAVPTPAPAAPEAKPPTLPMLDMPMTVQERFAVELRRLRDDREGQLEEARAELSRNTEAYQQYRARAHTTINTTIKKSADTQRALEARIAQCQAELATAREEFRRTREEGASAEVRWGQEAATLAQRIQDLEALVEAEQIRAAEVEAGVARSVEQGLHAAREEVAVVQQRLEAETAALEATRRTLSSARTELEKNKREMIQIRQRARTLIAEKDVILNRLTSGGGGENXXXXXXXXXXXAGRSTMDTGSSTHGAGNVIAANGHPALSPGLTPGGFTHGDGSPSVAAAVSGVPPPVGPDGGSSSGTAXXXXXXXXXXXXXXXXXXXXXXXXXVVGVAGGNAMVDSHHAEQQILQMARVQAQRDEETGRLRQKIQKLLEEISKRDRRLSAXXXXXXXXXXXXXELRGEAKRARELLDAEHGSQKLTYLKNVVIGFITSKVIQERKALVAVLAEILSFTEEEKAEVNLAVETAARVGKSSWWG*VFG 8937
S V+A DGRV++L+EE+++LR +R ELQLELA EKL R G+ G + F +W++A ++ RQ + E+E KAE+YE LV+RLSEELE+QG VNRHA +L E++ ++ AL+RA+RA ELI+MEPP+L+Q VWCLVRY G T PRG ++RDD E G++ ASA + + A A DG V ++ A++ H E A+GD E+G A G + V+ VVEWR QE+VDEWFA QVA+A+E + + A GG G M+A A AP A P LP+L+ PMT+Q+ F EL R+R D EG+LEEARAEL+RNTEAY+QYRARAHT I K S +QR EARIAQ EL+ +E R+ E+ +AE RW +E+A L Q+I +LEA VE R AEVEA +A SVE+G+ AA+EE A R + G+ G XXXXXXXX AEQQILQMARVQAQRDEETGRLR IQ+L +EI R+ L+A +L+GEA RA+ELLD G +K+TYLKNVV F+ S ER+ LV V+A ILSF+ E +EV AV AA G +SW G VFG
Sbjct: 2156 SAVEAGDGRVVSLSEEVQALRASRNGLDRRRVELQLELAGEKLKNAFGVRGRSGLGLGLGPEFGADLGVAGEVFQRWRLAFLEGRQGAMKSESEENRGKAESYESLVQRLSEELERQGEAVNRHASLLLEREEQLDAALDRAARAHDELISMEPPSLSQ---------------------------------------------------VWCLVRYAIASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGDT-PRGNVSSSRDDQPMEGEEGEQQPAASAPASXXQSQNDAPAT--DDGAAVSAED------AQLSSNHPVR------------------------EGAKGD------------------ESGXXXXXXXX--------------XXXXXXXXXXXVANGNNDKDDTVE------------VVEWRTQEDVDEWFAVQVARAIEVAEEQQQAASLGGGVDGGPSAGAMDATAVNA-QAPVAVAPVLPVLETPMTLQQSFGAELSRVRGDLEGKLEEARAELTRNTEAYKQYRARAHTAI----KNSGASQRDTEARIAQAHKELSAEQEAMRKAHEDRTAAEARWAEESAALKQQISELEARVETAAARTAEVEANIAGSVEEGVRAAKEETAEA--------------------------------------------------------------------------RRLEEXGAKAXGXXXXXXX---------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXAEQQILQMARVQAQRDEETGRLRVNIQRLADEIRAREEELAARDDEKEELRKRVEDLQGEAARAKELLDDATGPEKMTYLKNVVKRFVMSDGT-ERQRLVPVVATILSFSPAETSEVGKAVAAAAAGGATSW-GSVFG 2857
BLAST of mRNA_H-paniculata_contig403.10436.1 vs. uniprot
Match: A0A835ZGA7_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.890e-7 Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 1
Query: 8482 VGVAGGNAMVDSHHAEQQILQMARVQAQRDEETGRLRQKIQKLLEEISKRDRRLSAXXXXXXXXXXXXXELRGEAKRARELLDAEHGSQKLTYLKNVVIGFITSKVIQERKALVAVLAEILSFTEEEKAEVNLAV 8886
VG GG + AEQQILQ AR QAQRDEE RLR +++L + + +D+ ++A +L+ R +LL + + KLTYLKNVV+ F+ R+ LV VLA IL +E E A V +V
Sbjct: 2365 VGQPGGYDI----RAEQQILQAARAQAQRDEEGNRLRGLVKELRDRLQTKDKEIAAREAALRIRESEVEDLKRSRAREGDLL-GQDSADKLTYLKNVVLKFLVCDQ-HGRERLVPVLATILRLSELEAASVRASV 2493 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig403.10436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig403.10436.1 >prot_H-paniculata_contig403.10436.1 ID=prot_H-paniculata_contig403.10436.1|Name=mRNA_H-paniculata_contig403.10436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2958bp MEGWAKGLKDRAERAANQLSQVSTAFMPPEDGSGGQLEGDPLPTNGDSCRback to top mRNA from alignment at H-paniculata_contig403:12437..32506+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig403.10436.1 ID=mRNA_H-paniculata_contig403.10436.1|Name=mRNA_H-paniculata_contig403.10436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20070bp|location=Sequence derived from alignment at H-paniculata_contig403:12437..32506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig403:12437..32506+ >mRNA_H-paniculata_contig403.10436.1 ID=mRNA_H-paniculata_contig403.10436.1|Name=mRNA_H-paniculata_contig403.10436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=17748bp|location=Sequence derived from alignment at H-paniculata_contig403:12437..32506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |