mRNA_H-paniculata_contig4025.10426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4025.10426.1
Unique NamemRNA_H-paniculata_contig4025.10426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: D8LGW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW0_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 8.920e-78
Identity = 155/324 (47.84%), Postives = 191/324 (58.95%), Query Frame = 2 
Query:  197 HKVAGTLLKMGMGAGCTAQFSSVWVIEGAPDVHYCKPLEPLSSPQDFLLAHPPGPYTCLRAVGQRSVAMLDFHLDRLRRSAQASGLLDEVESRQGYESLQQGIPTAIANALLAFSEVNALESGCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTS-------------AQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTG 1129
            H   GT L+M   +  TA  +SVW   G P+V  C    PLSSPQ+FLLA+PPGPYTCLR V  RSVAML FHLDRL +S+QA+G      + QG +SL+Q     IA    +F E NA   GCPECM TVL   +      ++G G     +    T+             A   T      I+ HAWPLP   +  R    G++VL+AG  RS P+ KHSSWLRDR  L+ELKAQ   QEV L+          RRLLLEGLTSN F+VEEDGAV TAP+GVL G MR+  ++ C+ EGI VR + PD++RA  W+EAFLTG
Sbjct:   61 HNRGGTELEM---SSTTA--TSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARA-QGRQSLEQETVETIARVTESFREENA-GGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTSKRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPA--GVKVLIAGSGRSLPKAKHSSWLRDRKRLEELKAQTGAQEVVLSEIGFSPEGTTRRLLLEGLTSNFFVVEEDGAVSTAPSGVLLGGMRQLLISVCDKEGIEVRFDAPDISRAGRWREAFLTG 375
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A6H5LF55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF55_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 2.270e-67
Identity = 190/568 (33.45%), Postives = 244/568 (42.96%), Query Frame = 2 
Query:  113 ASWRPEFSGDIIQQTLSSFVPSYCWAKSHKVAGTLLKMGMGAGCTAQFSSVWVIEGAPDVHYCKPLEPLSSPQDFLLAHPPGPYTCLRAVGQRSVAMLDFHLDRLRRSAQASGLLDEVESRQGYESLQQGIPTAIANALLAFSE----VNALES---GCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTS-------------AQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQ-------------------------------FAVQEVALTVTLQQKGAPNRRLLLEG--------------------------------------------------------------------------------LTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALLTPNIPETVGTGTTARPEIAVDTVSRIELPTPWAIEQVGLSTAGSSDARFKGNDGVIATSG--EIQSVARRLRDRMVVDLVDGATHL 1417
            + W   F     +  +S   P    A  H   G  L+M   +  TA  +SVW   G P+V  C    PLSSPQ+FLLA+PPGPYTCLR V  RSVAML FHLDRL  S+QA+G      + QG +SL+QG    IA    +F +    V   E+   GCPECM TVL   +      + G G     +    T+             A  +T      I+ HAWPLP   +  R    G++VL+AG  RS PE KHSSWLRDR  LDELKAQ                                  QEV L+          RRLLLEG                                                                                LTSN F+VEEDGAVCTAP+GVL G MR+  ++ C+ EGI VR + PD++RA  W+EAFLTG GRV+ P+S L+ P I ++      +  E+A+   S+I +P P                      G IAT G   + S+A  LR R+V +L + AT +
Sbjct:   36 SEWGRGFKRSGFRNCISIVTP----AAHHNRGGADLEM---SSTTA--TSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWHSSQATGFGPAARA-QGRQSLEQGTVETIARVTESFRQGIYIVEKTENAGGGCPECMTTVLYTHRRRPGKEDVGEGLSDDDQPEGATAFTGARTSESPRKEAARRTKNSKICIMAHAWPLPTPPVDGRPA--GVKVLIAGSGRSCPEAKHSSWLRDRKRLDELKAQTRRPVLKLISRDVFVRLAVSAVTFVHYVCLAVGAQEVVLSEIGFSPEGTTRRLLLEGMKRSSQAWTLPTFPEPKVILHPRCSPGLQRALPTDSALTSSSPLLRDVVRRTDQYSPTIANPKVLERLPALNTTPPHKSGLTSNFFVVEEDGAVCTAPSGVLLGGMRQLLISVCDKEGIEVRLDAPDISRAGRWREAFLTGTGRVVAPVSTLIVPEIEDSSKITRGSGAEVAL---SKIGIPCP---------------------PGNIATVGGKPVPSLAETLRSRVVAELGEAATQI 567
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A7S3BDZ0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BDZ0_9VIRI)

HSP 1 Score: 118 bits (296), Expect = 4.330e-26
Identity = 93/290 (32.07%), Postives = 131/290 (45.17%), Query Frame = 2 
Query:  323 SPQDFLLAHPPGPYTCLRAVGQRSVAMLDFHLDRLRRSAQASGLLDEVESRQGYESLQQGIPTAIANALLAFSEVNALESGCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTSAQE---------QTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALL 1165
            +P ++L + P G YT  R VG  SV  LDFH+ RL +SA      D   +  G E                      LE+ C    +        H++  ++   C    R + P+ A+E           ATG   +  HA PLP+   H       +  +V G  RSN E K S+W+  R+ LD +       EV L   +   G      LLEGL+SN + VE DGA+ TA  GVL+G++R+  L ACE EG+PVR   P LA A  WK   ++   R+  P+  L+
Sbjct:   19 APGEWLQSGPRGAYTVARTVGLTSVFELDFHVQRLAKSASLMLEGDGAAAPAGSE----------------------LEACCDAARL--------HTRIVDAWGECV---RAMGPSGAKELKLSALLSWDVATGAAELRAHAAPLPSRPPHP------VRAIVRGAPRSNAEAKDSAWIAARAGLDAVGKAAGANEVVL---VDGNGD-----LLEGLSSNFYAVEADGALVTAEEGVLKGTVRDVALRACEREGVPVRLRPPRLADARSWKGCLVSSTSRLALPVDELV 261
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A484EA90_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA90_BRELC)

HSP 1 Score: 90.1 bits (222), Expect = 3.930e-16
Identity = 60/165 (36.36%), Postives = 85/165 (51.52%), Query Frame = 2 
Query:  698 NFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFA------VQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALLTPN 1174
            ++ + VH  PLP  L  +  VL      V GE R+N   KH+ W++DR  +++  A+        + EV L+ T+    +   +LLLEGLT+N+F+V+ D  V TA   VL GS R   L AC    IPV  E P L+   LW+ AF+T  G     I A   P+
Sbjct:  149 DYCVAVHVCPLPTPLRFTSTVL------VYGEGRTNAHCKHTQWIKDRVIIEQHAARIRENRGEPIDEVLLSTTI----SGGDKLLLEGLTTNLFVVKGD-KVYTAENDVLHGSTRMLVLKACADLSIPVVLEAPKLSERDLWQAAFVTRTGEEENAIEATSIPS 302
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A7S2WBR7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WBR7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.830e-14
Identity = 73/280 (26.07%), Postives = 120/280 (42.86%), Query Frame = 2 
Query:  326 PQDFLLAHPPGPYTCLRAV-----GQRSVAMLDFHLDRLRRSAQASGLLDEVESRQGYESLQQGIPTAIANALLAFSEVNALESGCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTSAQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDL--ARASLWKEAFLTGAGRVL 1144
            P+DF+ +HP G YTC+R       G   V  ++FH+ R+    Q  G  +   S +  E L   +    +    AF +     +G    +VT+L++  E  + +                            I+ HA P      ++   L      V G +   P  K SSW+ +R  LD LK+     EV +T         +   +LEGLT+N+F++ +D  + TAP+ +L+GS+R+  L  C   G+ V  +FP +  A+   W   F+T   + L
Sbjct:   19 PRDFINSHPCGVYTCMRTKDVHLQGADDVVDVEFHVKRILHGWQQLGNTEM--SHEKVEELLGRVAATCSGFRQAFPK-----AGGRGLIVTLLVFPGEKGEPK----------------------------IVSHAQPTSKLQEYAELALITNARTVNGNREKLPSVKASSWISERQTLDLLKSSHNATEVIMTDL-------SGECVLEGLTTNVFVLCDDLKIYTAPSQILEGSVRDIVLEVCRELGVTVVFKFPRVSDAKKGKWLGCFVTNVSKPL 256
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A1Y2BFH4_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BFH4_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.220e-11
Identity = 83/312 (26.60%), Postives = 127/312 (40.71%), Query Frame = 2 
Query:  329 QDFLLAHPPGPYTCLRAVGQRSVAMLDFHLDRLRRSAQASGLLDEVESRQ-----GYESLQQGIPTAIANALLAF--SEVNALESGCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTSAQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDG----AVCTAPTG-VLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALLTPNIPETVGTGTTARPEIAVD 1228
            ++FLL +  G YT  R + +  V   + HL+RL  S    GL   V +R+       ++ +  I  A+   L  +  S  +  ++G  +     +L ++  +   E  +  E                       +   P P              V   G  R+ P  K S W RDR  L+    +  + E+ LT T           + EGLTSN F+V +DG    AV TAP   VL G++     + C   GI  R EFP +   S W  AF+T + R+L P+  ++ PN  E+V  G    PE  +D
Sbjct:    7 KEFLLNNTRGAYTATRTLNRTKVMNWNIHLNRLIESW--IGLSKVVGNREPAKEFDLDATKTTISAALGTCLQEYFASTASLSKNGLTDEATITILLLEPSNNLAELRIHIEFQ---------------------LDTKPQPCT------------VAFYGSPRTYPCIKDSQWSRDRKPLELAAMKPGISELLLTDTDGN--------IYEGLTSNFFVVVQDGDGKLAVVTAPVQHVLGGTILRNVESVCGRLGIRFRYEFPKVGSVSTWVGAFVTSSLRILVPVQRIILPN-GESVNLGV---PECVLD 271
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A0G4IRM9_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IRM9_PLABS)

HSP 1 Score: 74.7 bits (182), Expect = 5.120e-11
Identity = 86/308 (27.92%), Postives = 128/308 (41.56%), Query Frame = 2 
Query:  335 FLLAHPPGPYTCLRAVGQRS-VAMLDFHLDRLRRSAQASGLLDEVESRQGYESLQQGIPTAIANALLAFSEVNALESGCPECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTSAQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPT--GVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALLTPNIPETVGTGTTARPEI--AVDTVSRI 1243
            FLLA P G YT +R    R  +   + HL RL  SA A G  D      G   L++ +  AI +A+ A  +      G  E  V V++               ++SG      S  ++  TG       A  +  A+  SR   G               TK S W+ +R  L + +      +V L   +  +GA     +LEGL+SN F++  D  V TAP   GVL GS+RE  +  C    I +    P  +  S W  AFLT   R++ PI  ++     ++ G    A P +   +D +SR+
Sbjct:   28 FLLAAPRGAYTVMRTTQNRQRLLCFEHHLQRLSTSAMAIGA-DRTRVEPG--RLERDVLHAIRSAMSAGGD------GDDELNVAVVV---------------DMSGEVAVHLSILKERETG-------ACVVVEAMRGSRAKYGS--------------TKDSKWVVERQGLLDRRTAPEADDVVL---VNDEGA-----VLEGLSSNFFVIGADQVVQTAPVRDGVLAGSIREIVMHVCRQHDIGIVERSPSWSSRSSWFGAFLTSTSRLVLPIHQVIDSVSKDSHGLPPLAFPAVHRIIDEISRL 282
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BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A5J4W0B9_9EUKA (Uncharacterized protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W0B9_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-10
Identity = 79/307 (25.73%), Postives = 125/307 (40.72%), Query Frame = 2 
Query:  350 PPGPYTCLRAVGQRSVAMLDFHLDRLRRSA----QASGLLDEVESRQGYESLQQGIPTAIANALLAFSEVNALESGCP------------------------ECMVTVLLYVQEHSKTRESGVGCEVSGRDISPTSA--------QEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGEQRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISAL 1162
            P GPYT +R   Q  +  LDFHL RL  S       +  ++  E      SL +     + +A + F E   L                             +  V VLL+V   S   +SG+        IS  +         +++ A  +  +  + + +P   +         E+ + G +R+N E K   W+  R   ++ K + +  E  L +  QQ  +     +LEG +SN F+V +DG+V TA  GVLQGS+R   L       +      P L+ + LW  AF+T   R+L PI+ L
Sbjct:   28 PCGPYTAMRTFQQIMLFDLDFHLQRLYNSLILMQHDNPQINFSEQYADNFSLSEIKKLVLQSAQVGFIEFFKLNGNIELKDPINEQLQQLKNLNQEQKVYRNDLRVLVLLFVNHDS---DSGIDTPKVVLHISQLTRTLHSQLEDEKEQAQNDPLMKDNPYIIPYGCI--------TEIRMGGNKRTNAEAKCMEWVERRKETEKYKCEES--EEMLIIDEQQDNS-----ILEGHSSNFFVVYDDGSVRTAGEGVLQGSIRSLVLQILSEMKVQCIFIAPKLSESELWTHAFITSTSRLLMPINEL 316
[Close]
BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A7R9ZIP8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZIP8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.880e-10
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 2 
Query:  797 RSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLEGLTSNIFIVEEDGAVCTAPTG-VLQGSMRERCLAACEHEGIPVRREFPDLARASLWKEAFLTGAGRVLTPISALLT 1168
            +++P  K SSW  +R  L+ +       EV LT  L   G  N  LL EGLT+N+F+V +DG + TA +  VL G MR   L   +H  +PV +    L+    WKE F+T + R+ T +  L T
Sbjct:    7 QNHPTAKLSSWCWERRPLETMFKDENTGEVILTRKLCGDGDDNLELL-EGLTTNVFVVYKDGRLKTADSQLVLNGYMRHEILRLADHIDMPVDQSPIRLSERGEWKEVFVTSSIRIATSVDTLNT 130
[Close]
BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Match: A0A7S4UF75_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UF75_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.170e-8
Identity = 58/172 (33.72%), Postives = 82/172 (47.67%), Query Frame = 2 
Query:  800 SNPETKHSSWLRDRSALDE--LKAQFAVQEVALTVTLQQKGAPNRRL------LLEGLTSNIFIVEEDGAVCTAPTG-VLQGSMRERCLAACEHEGIPVRREFP---DLARASLWKEAFLTGAGRVLTPISALLTPNIPETVGTGTTARPEIAVDTVSR-IELPTPWAIEQV 1276
            + P+ K SSW RDR  L+   L     V EV L   L      +         LLEGLTSN+F+V  DG + TA    VL G +R   L+     G+ V  E P     A+  LW EAF+T + R++ P+  +L P+  +      ++R E     VS+ I L T W+ + V
Sbjct:  149 NQPDAKLSSWCRDRRPLERNSLFKPTGVGEVLLAKPLDDAADDDDGTKYDEFQLLEGLTSNLFVVYRDGTIRTASENLVLGGYVRHLILSLASSLGLKVDTENPIKVQDAKNGLWVEAFVTSSIRIVVPVGQILIPSDNDK-----SSRKEKEQQEVSKNISLDTLWSKDTV 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4025.10426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LGW0_ECTSI8.920e-7847.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LF55_9PHAE2.270e-6733.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3BDZ0_9VIRI4.330e-2632.07Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A484EA90_BRELC3.930e-1636.36Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2WBR7_9STRA1.830e-1426.07Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1Y2BFH4_9FUNG1.220e-1126.60Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
A0A0G4IRM9_PLABS5.120e-1127.92Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A5J4W0B9_9EUKA1.220e-1025.73Uncharacterized protein n=1 Tax=Streblomastix stri... [more]
A0A7R9ZIP8_9STRA4.880e-1036.80Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4UF75_9STRA7.170e-833.72Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4025contigH-paniculata_contig4025:6166..11215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue1.2e-66
Seed eggNOG ortholog2880.D8LGW0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Amino-transferase class IV
EggNOG OGs2CZHV@1,2SAEW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1620
Cds size1377
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4025.10426.1prot_H-paniculata_contig4025.10426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4025 6366..11172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.7644038-UTR-H-paniculata_contig4025:6165..63651622930232.7644038-UTR-H-paniculata_contig4025:6165..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4025 6166..6365 -
1691481202.172651-UTR-H-paniculata_contig4025:6165..63651691481202.172651-UTR-H-paniculata_contig4025:6165..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4025 6166..6365 -
1622930232.8777893-UTR-H-paniculata_contig4025:11172..112151622930232.8777893-UTR-H-paniculata_contig4025:11172..11215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4025 11173..11215 -
1691481202.2439265-UTR-H-paniculata_contig4025:11172..112151691481202.2439265-UTR-H-paniculata_contig4025:11172..11215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4025 11173..11215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.7790577-CDS-H-paniculata_contig4025:6365..66581622930232.7790577-CDS-H-paniculata_contig4025:6365..6658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 6366..6658 -
1691481202.1827323-CDS-H-paniculata_contig4025:6365..66581691481202.1827323-CDS-H-paniculata_contig4025:6365..6658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 6366..6658 -
1622930232.7898238-CDS-H-paniculata_contig4025:6927..71101622930232.7898238-CDS-H-paniculata_contig4025:6927..7110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 6928..7110 -
1691481202.1911554-CDS-H-paniculata_contig4025:6927..71101691481202.1911554-CDS-H-paniculata_contig4025:6927..7110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 6928..7110 -
1622930232.8046398-CDS-H-paniculata_contig4025:7499..75751622930232.8046398-CDS-H-paniculata_contig4025:7499..7575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 7500..7575 -
1691481202.1996062-CDS-H-paniculata_contig4025:7499..75751691481202.1996062-CDS-H-paniculata_contig4025:7499..7575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 7500..7575 -
1622930232.8165402-CDS-H-paniculata_contig4025:7813..81361622930232.8165402-CDS-H-paniculata_contig4025:7813..8136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 7814..8136 -
1691481202.2081504-CDS-H-paniculata_contig4025:7813..81361691481202.2081504-CDS-H-paniculata_contig4025:7813..8136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 7814..8136 -
1622930232.8327773-CDS-H-paniculata_contig4025:8690..88791622930232.8327773-CDS-H-paniculata_contig4025:8690..8879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 8691..8879 -
1691481202.2241282-CDS-H-paniculata_contig4025:8690..88791691481202.2241282-CDS-H-paniculata_contig4025:8690..8879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 8691..8879 -
1622930232.8504744-CDS-H-paniculata_contig4025:10859..111721622930232.8504744-CDS-H-paniculata_contig4025:10859..11172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 10860..11172 -
1691481202.234427-CDS-H-paniculata_contig4025:10859..111721691481202.234427-CDS-H-paniculata_contig4025:10859..11172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4025 10860..11172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4025.10426.1

>prot_H-paniculata_contig4025.10426.1 ID=prot_H-paniculata_contig4025.10426.1|Name=mRNA_H-paniculata_contig4025.10426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=459bp
MRKPRPLVTLLRVTYGALLKSEGASWRPEFSGDIIQQTLSSFVPSYCWAK
SHKVAGTLLKMGMGAGCTAQFSSVWVIEGAPDVHYCKPLEPLSSPQDFLL
AHPPGPYTCLRAVGQRSVAMLDFHLDRLRRSAQASGLLDEVESRQGYESL
QQGIPTAIANALLAFSEVNALESGCPECMVTVLLYVQEHSKTRESGVGCE
VSGRDISPTSAQEQTATGNFSILVHAWPLPAALMHSREVLGGLEVLVAGE
QRSNPETKHSSWLRDRSALDELKAQFAVQEVALTVTLQQKGAPNRRLLLE
GLTSNIFIVEEDGAVCTAPTGVLQGSMRERCLAACEHEGIPVRREFPDLA
RASLWKEAFLTGAGRVLTPISALLTPNIPETVGTGTTARPEIAVDTVSRI
ELPTPWAIEQVGLSTAGSSDARFKGNDGVIATSGEIQSVARRLRDRMVVD
LVDGATHL*
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mRNA from alignment at H-paniculata_contig4025:6166..11215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4025.10426.1 ID=mRNA_H-paniculata_contig4025.10426.1|Name=mRNA_H-paniculata_contig4025.10426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5050bp|location=Sequence derived from alignment at H-paniculata_contig4025:6166..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCGACAGAGCTGAAAGTACCACTAGTGTAACTCACTCACGATGAGGA
AGCCTAGACCCCTCGTTACCCTGCTGCGCGTCACATACGGAGCTTTGCTC
AAGAGCGAAGGGGCATCTTGGCGGCCTGAATTCTCCGGCGACATCATCCA
ACAAACGCTTTCCTCCTTCGTACCATCGTACTGCTGGGCGAAGTCCCATA
AGGTAGCAGGCACTCTGCTCAAGATGGGTATGGGTGCTGGATGTACAGCG
CAATTCAGCAGTGTTTGGGTTATCGAAGGAGCTCCAGACGTTCACTATTG
CAAGCCTCTTGAACCTCTTTCATCTCCACAGGACTTCCTGCTGGCCCATC
CTCCAGGTATTTCTCATCCGATGCGACTCTCATCTTAGGCGGAATGGCGC
TCACCTGATTGACGGAGTTCTTGGCCTTTCTACTGACTGTCTGTGGGACT
GACCAGGGGCGACATACCCGTGTCTGTACTCCATTCTCTCCCTTCCGTAA
GCGATGCACCTGTACAGCGCGAGGGTCGCTCTTATCGCACCCTCAATAGC
TAGGGATCAAATATGCAAAACCTGGCTGTACAGTACAGTACAATTCGCGG
CGACAATCAGGTGGAGTCTCTCAAACCCAAACATGAGTGATATGAGTCGA
AATCCGGTATTAGAATATTTGGAGGTTTTTGCGCGAGCGAAGCGAGCTGG
CTTCATTTCTTGGTCGTCACGAATCAGTGTTCCGACTGGGGTCTCCGGTC
CGAAGTTGGGAGTGTGTAATGCCTCAGTTCTTGCCCAATATTATCGCACG
GTGTTCGGGGCAGCAGTCCCTCTCGCTGTAAACATCGGAGTTGACGGCAG
TATACACTGAGCATAGTCTTCTCCCTTCGCAGACATTTTTTGCTGCATGT
ACTAGTATTTTTCCTGGAAACGCTCGAAGAAAAATGTGAGTACGAGGAAT
TGGACTTAGCTGTGCTCGAATGGAAGCACGAGTTCAGTGGGATGATGGGG
AAAAAGACATTTCTGGATAATCAGTACGAGCTGTATCCCGTCGCTGGATA
TCTTTGAAAGTTTCTGACTGTAGCAATAATGTTGCTTGATTCTCGGCGCA
GAAGGTGATATGAACCCATTCCCGCGGTATGTACGAAGCACGAACAATAA
TGTGAAATCTTGATATTCAAATACCTCTCTTTGTTGTCAAGTGGTAGATA
TCTGACATACAAGGTCAGCCCGCCGATCAATTTTGTAAAGTCGTAGCATC
ACACAGTCACAGCGAGTTGCACCCCAATAGATTCTTGAAATACAGCAAAA
TCGAAAGAACCGATTAGAAATATTCCTATCTTGCTCTATTCAAAAATTCT
ATTATCGGGTTCAATATAGTGCAATAGTTCCGGGTGACATTTTCCTTCGA
CAAATGAAATATTTTTCCTCTGATGGCAGCGGTAGTGTATACCAAGTCCA
CTCAACTCTCTTACACGCGTGACTACACCAATTGATGTGTAGTTAACGTG
CAGGTAATCGGAGCCAGTTACTCCCACTAGCAGCTACATACAAACGGTTG
AAGAAAGTAGCCGTCGACAGAGAGCGCACTAGCAAGAGACGGGAGAAATA
CAAACTCTGTGAACACATGACACCACCAATCCAATAACGACCGGGGCTGA
GTTTAAAGTAACCGTAACCATGCATGGCATACCCTTCTTATGACTTGAGG
GCACGAGCGAGTGAGTGAGATCAGAAATCAGCAATGCCATATCCCCCCAG
GCAGCACACAATGAGCCGTGAAGCAGCAATAATCCTCCTTAACCTTAGCC
AGTGTGACTCTCCACCATCGCAGGTGACACGTAGTCAACGACACAGCATC
TATGCCCCTCGGCGTGATTGTCGCGGTATGCGTACGTTTCTCGTCCATGA
AAACGAGACAGGCGGTCAGCACACAACAAACAGAAAATTCCTTAATTTTG
TATAGTAATATACAGAGTAGTGTAGCTGTCAGATGCTCACGAGAAGTTTA
CAGAACGTGACACATACAGTACAGACAAGACCTATAGTTCCCGTGCACGA
AACAGGGGTTTGGGCGATGAGTTGAACTTGAAGTATTTTCATGGGCAAGG
GGGCTCAACAATGTTTCCATTGTCCGTCCTCCAGCCTTTCGTCAAAAGGT
CTTCAATGGACCTACTTGCCCACATGCCATGGGTCTCCGACATCAGTCCA
TGACATGGGTCTTGTTCTGCGGTACCCAGTTACCGACGCGCGGTTGAAGC
AGTTTTCGGTTGGGCAGCCTTAGTTGTGCCTATCCTTCACTCGCTCTCAT
TGTTGCCTCACCGTAGTCCTCACTGTGTTGAATCAGGTCCGTACACGTGT
CTCAGGGCCGTCGGGCAACGGTCCGTGGCAATGCTTGATTTTCACCTTGA
CAGACTACGAAGGTCTGCTCAAGCTTCAGGCCTTCTCGACGAGGTCGAAA
GTCGACAGGGCTATGAGTCCCTCCAACAGGGGATACCTACCGCCATCGCA
AACGCTTTGTTGGCATTTTCGGAAGGTGTGCAGTGGCTTCGGTCCTTTAT
CATGCGTACGAAACTGTCTTTTATCTGCTTACAGTATCCCCACTCACTCC
GATCCACCACGTCCGCAAATGCTAGGCAGGAGAAGTGTAGGCCGAGTGCG
CTGAGCTTGGTATGTGTAACTATGATCACGTATTTGCTTCTTGTGAACAC
GTGTTATCGACTGGGTCGTGAGGTATGATATTTACTACAAACCCATCACG
GAGCAACTTGTGCGTCCCACTGAGCGGGAAAAAATTACAGCAGTGCATGA
TCACACCGAGACTCCTCCAGGCGCTACTCACTGCAGCAAGGCTGAGAAGC
AGGTCGTGTTGGGCACCGGTATTTCTTTTCTGCATAAAGTTAGTGGTATA
TTTTGGGAAAAGCTCATGTGTTGGATGAAAGTCGTTAACCTTTTGACGAA
GCGACGATATCATGAAATTTCTTGGCGGAGCTGTTATCCGCGCCGGAAAC
CTGATGTTTTCCTTGGGATACTCATTCGTCGTCAGTAAACGACTGCTTCC
CTCTATGTCATTGCACTGAACCTGTACAGTAAACGCGCTGGAATCTGGCT
GCCCTGAGTGCATGGTCACCGTGTTATTATACGTGCAAGAGCATTCCAAA
ACAAGAGAGAGCGGCGTTGGCTGCGAAGTTTCAGGACGTGATATAAGCCC
TACTTCAGCACAGGAGCAAACAGCTACTGGAAACTTCAGCATCTTGGTGC
ATGCATGGCCGTTACCTGCTGCGCTAATGCATTCGAGAGAGGTATTAGGT
GGCTTAGAAGTTCTCGTTGCCGGAGAGCAGAGATCAAATCCTGAGACAAA
ACACTCGAGCTGGCTGAGGGACAGGAGTGCGCTGGACGAGTTAAAAGCGC
AGGTATTGTGCAAGTTGTCACGTCTGCAGCTATCAGGGAAATAACGATAT
GCAATCAATAGCAAATCCATATGCATGGGATGATGTCGAGAAATGCCGAC
ATATTATCTAGTACATACCTCGAAGATTTACGGCTGGTGGTACAAGTAAT
TCCCTGCTTCGTATCGCTCTTTTTTCCCGCTGGTGGTTGCGTATCGGGGC
TGTTCTCCCCCTTCTGCCCAACTGTCCCGACATTTCACAGTTTGCAGTCC
AAGAGGTTGCGTTGACGGTGACGCTGCAGCAAAAAGGCGCGCCAAATCGA
AGGCTGTTGCTCGAAGGTGTGCAAAGCGGTGCTGCTGTCGACGTGTACAT
TATATCAAATCTTCTAACAATGTGAACCGTTCTCGGCATGACATGCATGA
CACTCCTCCATCAACGATGGTGCCCTCTTTTATGTTTGGCCCACCAGAAA
AAGAAGTCTCGAATACCATAAAGTGGGCACTTGTCATGACAACATAGAAC
GTTTGGAGAACACCACAAGTTGACGGAGATAATTCCATGGGTACACACGT
AGTAACGTGTCGAGTTCTTCTATCATGTGCCCTAGCCCTCCGCTAACTTT
CACGGTTATAGGTTCGTCTCTATTCTCTTTTTCTTTTGTCACTTTTTGTC
GTTCGCTTTGCGCTTGCATGAAGAACTAACATGTGCCCATTGCCAACGTA
TTCAGGGCTCACCTCCAACATCTTCATTGTGGAGGAAGACGGGGCGGTGT
GCACAGCACCAACCGGAGTGCTGCAGGGCAGTATGCGCGAGCGGTGTCTC
GCTGCATGCGAGCACGAGGGCATTCCTGTTCGACGGGAATTTCCAGACCT
CGCGCGTGCATCCTTGTGGAAGGAGGCGTTCTTGACAGGTGAGGCACTGG
TGTGCTCTGACAGCACATGATCCTGTCACTGCTGTAGGTGCTGGGGTTGC
CCTTCACAACCTGGCATGGGGAGTGTGCAAGCTCTATCGCCGTACCATAT
TACTTCGAAACAGGGGTGTATCCACGAAGCAATGCGGGTCCGTTTCCTCG
ATAGGCGAGATTTCGTTGGCCAAGAAACCCTTGGCACTGTTTCCCGTTCT
CGCAGTCTTATCCATCACTGATTCTCAGCTCTCTCGTTTATTGAATCGAT
TTCACAGGAGCTGGTCGAGTTTTAACCCCAATTTCGGCCTTGCTGACTCC
TAACATACCCGAAACGGTTGGTACTGGTACTACCGCACGGCCTGAAATAG
CTGTTGATACCGTCTCAAGGATCGAGCTACCGACGCCATGGGCAATCGAA
CAAGTAGGCCTGTCTACAGCAGGGAGTTCAGACGCACGTTTCAAGGGTAA
TGATGGCGTCATAGCCACATCAGGGGAGATTCAATCGGTGGCTCGACGAC
TTCGTGATCGCATGGTTGTTGATCTAGTCGACGGTGCTACACACCTTTGA
CTAGGTATGATAATTCGTAATGAAGCGTTCGCACACGGTGAAATGTTCAC
CTGTCATCCATACCGAAGAGACCGGCGAGGTGGTCACTGCAGTGAGTGAC
GAAATCCCACGAGTCCAAACATACGTGGCCGAAATAAGGAACGCGGGGGG
ACGGGGGTGGGGGGTGAACGTGGAGGCTGGGTGTGCGACGTTCGGGATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig4025:6166..11215-

>mRNA_H-paniculata_contig4025.10426.1 ID=mRNA_H-paniculata_contig4025.10426.1|Name=mRNA_H-paniculata_contig4025.10426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at H-paniculata_contig4025:6166..11215- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGCCTAGACCCCTCGTTACCCTGCTGCGCGTCACATACGGAGC
TTTGCTCAAGAGCGAAGGGGCATCTTGGCGGCCTGAATTCTCCGGCGACA
TCATCCAACAAACGCTTTCCTCCTTCGTACCATCGTACTGCTGGGCGAAG
TCCCATAAGGTAGCAGGCACTCTGCTCAAGATGGGTATGGGTGCTGGATG
TACAGCGCAATTCAGCAGTGTTTGGGTTATCGAAGGAGCTCCAGACGTTC
ACTATTGCAAGCCTCTTGAACCTCTTTCATCTCCACAGGACTTCCTGCTG
GCCCATCCTCCAGATGAGGAAGCCTAGACCCCTCGTTACCCTGCTGCGCG
TCACATACGGAGCTTTGCTCAAGAGCGAAGGGGCATCTTGGCGGCCTGAA
TTCTCCGGCGACATCATCCAACAAACGCTTTCCTCCTTCGTACCATCGTA
CTGCTGGGCGAAGTCCCATAAGGTAGCAGGCACTCTGCTCAAGATGGGTA
TGGGTGCTGGATGTACAGCGCAATTCAGCAGTGTTTGGGTTATCGAAGGA
GCTCCAGACGTTCACTATTGCAAGCCTCTTGAACCTCTTTCATCTCCACA
GGACTTCCTGCTGGCCCATCCTCCAGGTCCGTACACGTGTCTCAGGGCCG
TCGGGCAACGGTCCGTGGCAATGCTTGATTTTCACCTTGACAGACTACGA
AGGTCTGCTCAAGCTTCAGGCCTTCTCGACGAGGTCGAAAGTCGACAGGG
CTATGAGTCCCTCCAACAGGGGATACCTACCGCCATCGCAAACGCTTTGT
TGGCATTTTCGGAAGGTCCGTACACGTGTCTCAGGGCCGTCGGGCAACGG
TCCGTGGCAATGCTTGATTTTCACCTTGACAGACTACGAAGGTCTGCTCA
AGCTTCAGGCCTTCTCGACGAGGTCGAAAGTCGACAGGGCTATGAGTCCC
TCCAACAGGGGATACCTACCGCCATCGCAAACGCTTTGTTGGCATTTTCG
GAAGTAAACGCGCTGGAATCTGGCTGCCCTGAGTGCATGGTCACCGTGTT
ATTATACGTGCAAGAGCATTCCAAAACAAGAGAGAGCGGCGTTGGCTGCG
AAGTTTCAGGACGTGATATAAGCCCTACTTCAGCACAGGAGCAAACAGCT
ACTGGAAACTTCAGCATCTTGGTGCATGCATGGCCGTTACCTGCTGCGCT
AATGCATTCGAGAGAGGTATTAGGTGGCTTAGAAGTTCTCGTTGCCGGAG
AGCAGAGATCAAATCCTGAGACAAAACACTCGAGCTGGCTGAGGGACAGG
AGTGCGCTGGACGAGTTAAAAGCGCAGTAAACGCGCTGGAATCTGGCTGC
CCTGAGTGCATGGTCACCGTGTTATTATACGTGCAAGAGCATTCCAAAAC
AAGAGAGAGCGGCGTTGGCTGCGAAGTTTCAGGACGTGATATAAGCCCTA
CTTCAGCACAGGAGCAAACAGCTACTGGAAACTTCAGCATCTTGGTGCAT
GCATGGCCGTTACCTGCTGCGCTAATGCATTCGAGAGAGGTATTAGGTGG
CTTAGAAGTTCTCGTTGCCGGAGAGCAGAGATCAAATCCTGAGACAAAAC
ACTCGAGCTGGCTGAGGGACAGGAGTGCGCTGGACGAGTTAAAAGCGCAG
TTTGCAGTCCAAGAGGTTGCGTTGACGGTGACGCTGCAGCAAAAAGGCGC
GCCAAATCGAAGGCTGTTGCTCGAAGTTTGCAGTCCAAGAGGTTGCGTTG
ACGGTGACGCTGCAGCAAAAAGGCGCGCCAAATCGAAGGCTGTTGCTCGA
AGGGCTCACCTCCAACATCTTCATTGTGGAGGAAGACGGGGCGGTGTGCA
CAGCACCAACCGGAGTGCTGCAGGGCAGTATGCGCGAGCGGTGTCTCGCT
GCATGCGAGCACGAGGGCATTCCTGTTCGACGGGAATTTCCAGACCTCGC
GCGTGCATCCTTGTGGAAGGAGGCGTTCTTGACAGGGCTCACCTCCAACA
TCTTCATTGTGGAGGAAGACGGGGCGGTGTGCACAGCACCAACCGGAGTG
CTGCAGGGCAGTATGCGCGAGCGGTGTCTCGCTGCATGCGAGCACGAGGG
CATTCCTGTTCGACGGGAATTTCCAGACCTCGCGCGTGCATCCTTGTGGA
AGGAGGCGTTCTTGACAGGAGCTGGTCGAGTTTTAACCCCAATTTCGGCC
TTGCTGACTCCTAACATACCCGAAACGGTTGGTACTGGTACTACCGCACG
GCCTGAAATAGCTGTTGATACCGTCTCAAGGATCGAGCTACCGACGCCAT
GGGCAATCGAACAAGTAGGCCTGTCTACAGCAGGGAGTTCAGACGCACGT
TTCAAGGGTAATGATGGCGTCATAGCCACATCAGGGGAGATTCAATCGGT
GGCTCGACGACTTCGTGATCGCATGGTTGTTGATCTAGTCGACGGTGCTA
CACACCTTTGAGAGCTGGTCGAGTTTTAACCCCAATTTCGGCCTTGCTGA
CTCCTAACATACCCGAAACGGTTGGTACTGGTACTACCGCACGGCCTGAA
ATAGCTGTTGATACCGTCTCAAGGATCGAGCTACCGACGCCATGGGCAAT
CGAACAAGTAGGCCTGTCTACAGCAGGGAGTTCAGACGCACGTTTCAAGG
GTAATGATGGCGTCATAGCCACATCAGGGGAGATTCAATCGGTGGCTCGA
CGACTTCGTGATCGCATGGTTGTTGATCTAGTCGACGGTGCTACACACCT
TTGA
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