mRNA_H-paniculata_contig4024.10425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4024.10425.1
Unique NamemRNA_H-paniculata_contig4024.10425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: D7G5C6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.890e-57
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTIPNLAK-AEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEDA 352
            VFNVF+S IAYDTSIK++PNLAK   EE MVEYEFEPDTK+EV++DMYEYL+ASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE+A
Sbjct:  187 VFNVFKSAIAYDTSIKSLPNLAKEGGEEQMVEYEFEPDTKEEVMQDMYEYLVASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEEA 304          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A835Z5Y6_9STRA (F1 complex, gamma subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.180e-47
Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTIPNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            V+  FRS IAY+TS K + NL K E+E MVEYEFEPDTK EVL+DMYE+ LAS ++H+LME+ATSEQSSRMNAMENASKNAGEMI+SLTL+YNRARQSRITTELIEIISGA+ALE
Sbjct:  192 VYQRFRSAIAYETSCKLLINLTKLEQEPMVEYEFEPDTKSEVLQDMYEFTLASSLYHALMENATSEQSSRMNAMENASKNAGEMIESLTLLYNRARQSRITTELIEIISGAAALE 306          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7R9UBL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBL1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.160e-39
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            V+N F S I+Y T + T+ P L + E E M EYEFEPD K+E++ D+YEYLL S++++ LMESATSEQSSRMNAMENASKNAGE+ID LTL YNRARQ+RITTELIEIISGASALE
Sbjct:  164 VYNEFVSAISYTTRLATLAPLLKEGEAEPMPEYEFEPDNKNEIMVDLYEYLLTSKIYYGLMESATSEQSSRMNAMENASKNAGELIDKLTLQYNRARQARITTELIEIISGASALE 279          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S2WGF0_9STRA (ATP synthase subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGF0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.660e-38
Identity = 78/117 (66.67%), Postives = 94/117 (80.34%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALED 349
            ++N +++   Y    K I P   + E+E M+ YEFEPDTK EVL+D++EYLL SQ++HSLM+ A +EQSSRM AMENASKNAGEMI SLTL YNRARQ+RITTELIEIISGASALED
Sbjct:  190 IYNAYKNAATYHQMYKVIKPFSGEGEDEAMLAYEFEPDTKSEVLQDLHEYLLTSQIYHSLMDGAAAEQSSRMTAMENASKNAGEMIHSLTLQYNRARQARITTELIEIISGASALED 306          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S1UJC2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJC2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.200e-37
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            V+N F S IAY+T + T+ P L +   E M EYEFEPD K+EV+ D++EY+L +++++ LME ATSEQSSRMNAMENASKNAGE+ID LTL YNRARQ+RITTELIEIISGASALE
Sbjct:  183 VYNEFVSAIAYNTRLATVAPMLKEDVAEPMPEYEFEPDNKNEVMVDLFEYMLTTKIYYGLMEGATSEQSSRMNAMENASKNAGELIDKLTLQYNRARQARITTELIEIISGASALE 298          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A6T7FHU0_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FHU0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.390e-37
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALED 349
            V+N F +   Y    K I P   + E+E M+ YEFEPDTK EV+ DMYEYLL SQ++HS M+ A SEQS+RM AMENASKNAGEMID LTL YNRARQSRITTELIEIISGASALED
Sbjct:  215 VYNSFVNKATYQQKYKIIKPFTGEGEDEPMMAYEFEPDTKGEVMADMYEYLLTSQIFHSFMDGAASEQSARMTAMENASKNAGEMIDKLTLKYNRARQSRITTELIEIISGASALED 331          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S3Q9N9_9STRA (ATP synthase subunit gamma n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9N9_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.500e-37
Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 2
Query:    5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEDA 352
            +N + +   Y    K I P   + EEE M EYEFEPDTK EVL D YEY+L SQM+HS M+ A +EQSSRM AMENAS+NAGE+IDSLTL YNRARQSRITTELIEIISGA+ALEDA
Sbjct:  203 YNSYVNAAVYHQKYKLIRPLTGEGEEEPMTEYEFEPDTKSEVLVDFYEYMLTSQMFHSFMDGACAEQSSRMTAMENASQNAGELIDSLTLKYNRARQSRITTELIEIISGAAALEDA 319          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S2N4W1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4W1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.490e-36
Identity = 80/115 (69.57%), Postives = 90/115 (78.26%), Query Frame = 2
Query:    5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            +N F +   Y    K I P   + E+E M+ YEFEPDTK EVL D+YEYLL SQ++HS M+ A SEQSSRM AMENASKNAGEMIDSLTL YNRARQ+RITTELIEIISGASALE
Sbjct:  193 YNSFINSAVYTQKYKLIKPFSGEGEDEPMMSYEFEPDTKSEVLTDLYEYLLTSQVYHSFMDGAASEQSSRMAAMENASKNAGEMIDSLTLQYNRARQARITTELIEIISGASALE 307          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S0FVP8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FVP8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.670e-36
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2
Query:    5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            +N + +   Y  + K I P   + E+E M+ YEFEPDTK EV+ D+YEYLL SQ++HS M+ A SEQSSRM+AMENASKNAGEMI+SL+L YNRARQ+RITTELIEIISGASALE
Sbjct:  176 YNTYVNAAVYKQNYKIIKPFAGEGEDEPMMAYEFEPDTKSEVMVDLYEYLLTSQLFHSFMDGAASEQSSRMSAMENASKNAGEMIESLSLRYNRARQARITTELIEIISGASALE 290          
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: W7TPQ0_9STRA (Atp synthase gamma n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPQ0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.840e-35
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2
Query:    2 VFNVFRSVIAYDTSIKTIPNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
            VFN FRS IAY+ ++KT+   A    E  VEYEFEPDTK EVL+DMYE  +A+ M+ S++ESA +EQSSRMNAMENASKN  ++I  L++ YNRARQSRITTEL+EIISGASALE
Sbjct:  170 VFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C6_ECTSI1.890e-5788.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5Y6_9STRA2.180e-4778.26F1 complex, gamma subunit of ATPase n=1 Tax=Tribon... [more]
A0A7R9UBL1_9STRA1.160e-3970.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WGF0_9STRA6.660e-3866.67ATP synthase subunit gamma n=1 Tax=Rhizochromulina... [more]
A0A7S1UJC2_9STRA2.200e-3768.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6T7FHU0_9STRA2.390e-3769.23Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S3Q9N9_9STRA2.500e-3768.38ATP synthase subunit gamma n=1 Tax=Chaetoceros deb... [more]
A0A7S2N4W1_9STRA1.490e-3669.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0FVP8_9STRA7.670e-3666.09Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
W7TPQ0_9STRA1.840e-3566.09Atp synthase gamma n=3 Tax=Monodopsidaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4024contigH-paniculata_contig4024:13669..14965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0224@1,KOG1531@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size797
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.8e-38
Seed eggNOG ortholog2880.D7G5C6
KEGG koko:K02136
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4024.10425.1prot_H-paniculata_contig4024.10425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4024 14111..14880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.644046-UTR-H-paniculata_contig4024:13668..141101622930232.644046-UTR-H-paniculata_contig4024:13668..14110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 13669..14110 -
1691481202.1308975-UTR-H-paniculata_contig4024:13668..141101691481202.1308975-UTR-H-paniculata_contig4024:13668..14110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 13669..14110 -
1622930232.7186198-UTR-H-paniculata_contig4024:14880..149651622930232.7186198-UTR-H-paniculata_contig4024:14880..14965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 14881..14965 -
1691481202.1603684-UTR-H-paniculata_contig4024:14880..149651691481202.1603684-UTR-H-paniculata_contig4024:14880..14965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 14881..14965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.6873121-CDS-H-paniculata_contig4024:14110..143321622930232.6873121-CDS-H-paniculata_contig4024:14110..14332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 14111..14332 -
1691481202.1411345-CDS-H-paniculata_contig4024:14110..143321691481202.1411345-CDS-H-paniculata_contig4024:14110..14332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 14111..14332 -
1622930232.7036078-CDS-H-paniculata_contig4024:14832..148801622930232.7036078-CDS-H-paniculata_contig4024:14832..14880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 14833..14880 -
1691481202.1508193-CDS-H-paniculata_contig4024:14832..148801691481202.1508193-CDS-H-paniculata_contig4024:14832..14880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 14833..14880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4024.10425.1

>prot_H-paniculata_contig4024.10425.1 ID=prot_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENAS
KNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEDA*
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mRNA from alignment at H-paniculata_contig4024:13669..14965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4024.10425.1 ID=mRNA_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-paniculata_contig4024:13669..14965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTTTAACGTTTTCCGGTCGGTAATTGCGTACGACACGTCCATCAAGA CAATCCCCAACCTCGCCAAGGCGGAGGAGGAGATCATGGTAGAGTACGAG TTCGAGCCCGACACCAAGGATGAAGTGCTTGAGGTAAGTGAATAGCTGGC CCTTGTAAGCTAGTGTGTTGCCAAGTTGGGTAGGGAAGCGTAGCGAGAGG AACCTAATCTCCTGCCGTTGGTTCTTGTTCAGGAGTCATTCTGGTGAAAA TTACCAGTGCCACGAGGACCTCCTTTACCGTGTTGAGTAAACTCCGGATA TCGATGTATTTTGGTCAAATCAAGAATGTATTACCGCAGACCCCACAAGA ACACCTCAAACATCGGGCACCTCGGCTAGTGGTCAGCGATTAGAGGAGGA CGTGTCATGTAGCCATGGTTTGGCACGATTATTTTGCCGTTTAGGAGAGG CCTTTACTTTGAAAATCGTTCAGGTCGCCCTAGTGCATAGTGCACGGACT CATGGCCTGTGCTCGGGTGGATCAGGGCAACGTGTTTTTCGCGTAGTTCT TCTATCTCGGTGTACAAACAGTGCGCTTCAATTCGCCAATCTTCACTCCC CTCTCCTCCCCATGTTATCTTTCAACTTTTCAGGATATGTACGAATATCT TCTGGCTTCTCAGATGTGGCACAGCCTCATGGAGAGCGCAACCTCAGAGC AGTCTTCTCGCATGAACGCTATGGAGAACGCGAGCAAGAACGCGGGAGAG ATGATTGACAGTCTCACGCTTATCTACAATCGCGCCCGTCAATCGCGCAT TACCACTGAGCTTATCGAAATCATCTCGGGAGCGTCGGCCCTTGAAGATG CGTAGAAAGATGGTTAATGCGCGCCCGGGGTAGGAAGTCCGTTAGTTGTG TGTGGTATGAGGGGGTGGTATTCCGACGTGATATCTTGTGATTTTCACAG GTAGTGTCGCGGTCTACGCAGTGTACTCAGCACAGCATGACTTGCAATGG TGGAGTGCCTCGCCCGTAGTCCAGCCATTCGCGGATAGGTATATAGTAGT TTGGGCTTTTTAATGCTTTTCTCGAGGAATGATGGCGTGAGCACTAGACT TGAACGTGTAGTTAATCCAATTAACCTGAGCTGGGTTGTCCAGATAGGAT AGGTCCTTGATGTGAGGATTCCCAGGTATTGGAGACGTCTGCAATTTGGA TGACAATGAAAAATACACCATGACGTGCTTTCCCTCAGCGACGTCAAGAC GGCGCCCGTTACTACAAAATACCAGCTGCCTCCAACGTACATGACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig4024:13669..14965-

>mRNA_H-paniculata_contig4024.10425.1 ID=mRNA_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig4024:13669..14965- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGAGTACGAGTTCGAGCCCGACACCAAGGATGAAGTGCTTGAGAT
GGTAGAGTACGAGTTCGAGCCCGACACCAAGGATGAAGTGCTTGAGGATA
TGTACGAATATCTTCTGGCTTCTCAGATGTGGCACAGCCTCATGGAGAGC
GCAACCTCAGAGCAGTCTTCTCGCATGAACGCTATGGAGAACGCGAGCAA
GAACGCGGGAGAGATGATTGACAGTCTCACGCTTATCTACAATCGCGCCC
GTCAATCGCGCATTACCACTGAGCTTATCGAAATCATCTCGGGAGCGTCG
GCCCTTGAAGATGCGTAGGATATGTACGAATATCTTCTGGCTTCTCAGAT
GTGGCACAGCCTCATGGAGAGCGCAACCTCAGAGCAGTCTTCTCGCATGA
ACGCTATGGAGAACGCGAGCAAGAACGCGGGAGAGATGATTGACAGTCTC
ACGCTTATCTACAATCGCGCCCGTCAATCGCGCATTACCACTGAGCTTAT
CGAAATCATCTCGGGAGCGTCGGCCCTTGAAGATGCGTAG
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