mRNA_H-paniculata_contig40213.10418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40213.10418.1
Unique NamemRNA_H-paniculata_contig40213.10418.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 2.290e-75
Identity = 114/159 (71.70%), Postives = 124/159 (77.99%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARPDPSHNFDGKIGIWRICVMKTAQRSSKNRQKG-----------------------EEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPHTGRNNP 408
            NVVHLDESWFYLMREKE VR+F GE+VP PPRV H+S+LPKIMVIVANARPDP+H+FDGKIGIWRICV++TAQRSSK                            EEYEFDCTIDAEWYKDWYID LLPAIK+KMPW RSKRVVVQQDGASPHTG+ NP
Sbjct:  153 NVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNP 311          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: W4GR72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GR72_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.600e-23
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP----DPSHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            ++VHLDE WF   +++  V +  GE  P     + K ++PK M + A ARP    D + +F+GKIG+W+   M  A RSS+NR  G        +D   Y+D+ ++ +LPAIK KMP   SKRV++QQD A+PH
Sbjct:   40 DIVHLDEKWFNADKDRRKVYLTKGE-TPKGRACKSKRFIPKFMFLAAVARPQFDADGNLDFEGKIGMWQFITMMPAARSSRNRSGGTLVATLVNVDPAVYQDFVLNLVLPAIKAKMP-SVSKRVMLQQDNATPH 171          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: UPI000E6FC514 (uncharacterized protein LOC113324270 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC514)

HSP 1 Score: 102 bits (253), Expect = 1.220e-22
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    7 VHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARPDPSHNFDGKIGIWRICVMKTAQRSSKNRQKGE-EYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPHTGRN 402
            +H+DE WFY+ R  +   +   EE P     + K+++ KIM + A ARP     FDGKIGIW   V + A+R+SKNR+ G  E +   +ID +  + + I+ LLPAIKKK P+   K++ +QQD A PH   N
Sbjct:  237 IHIDEKWFYITRRAQKYYLHAEEEEPLR-TCKSKNFITKIMFLTAVARP--RLGFDGKIGIWPFVVKEAAKRTSKNRKAGTMETKAMKSIDKDVMRCFLIEKLLPAIKKKWPFNNCKKIFIQQDNAKPHVHEN 366          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A397E5D7_9STRA (HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5D7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.100e-21
Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP----DPSHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            +VVHLDE WF   +++  V +  GE  P     + K ++PK+M + A ARP    D +  FDGKIG+W    M  A RSS+NR  G        ++A  Y+D+ ++ +LPAIK KMP    KRV++QQD A+PH
Sbjct:  185 DVVHLDEKWFNADKDRRKVYLTKGE-TPKGRACKSKRFIPKVMFLAAVARPQFDADGNLVFDGKIGMWPFITMTPAARSSRNRSAGTLVATLVNVNAAVYQDFVLNLVLPAIKAKMP-SVCKRVMLQQDNATPH 316          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A8J2WWN0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWN0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.230e-21
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEE----VPAPPRVQHKSYLPKIMVIVANARPDPSHNFDGKIGIWRICVMKTAQRSSK--NRQKGEEYEFDC-TIDAEWYKDWYI--DHLLPAIKKKMPWQRS--------KRVVVQQDGASPHTGRNN 405
            + VH+DE WF+ M +    R+FP       +P P R+ HKS  PK+M +VA ARP P +NFDGKIGIW   +++ A+RS K     KG     +  T+DA+ Y+      + ++ AI++KM W +         + + +Q DGA PHT + N
Sbjct:  222 DTVHVDEKWFFQMDDGAVCRVFPDAHGNYTLPPPRRLYHKSRTPKLMFLVAVARPRPEYNFDGKIGIWHFAIVRKAKRSHKATGTVKGVTDIMETYTVDAKVYRKVITGKEGVMEAIREKMWWYKKGSGKPEAGQEIWLQHDGARPHTAKAN 373          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6A4YX26_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YX26_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.910e-21
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP----DPSHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            +VVHLDE WF   ++   V +  GE  P     + K ++PK+M + A ARP    D +  FDGKIG+W    M  A RSS+N   G        ++A  Y+D+ ++ +LPAIK KMP    KRV++QQD A+PH
Sbjct:    3 DVVHLDEKWFNADKDLRKVYLTKGE-TPKGRACKSKRFIPKVMFLAAVARPQFNADGNLVFDGKIGMWPFITMTPAARSSRNCSAGRLVATLVNLNAAVYQDFVLNLVLPAIKAKMP-SVCKRVMLQQDNATPH 134          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6A4FIZ1_9STRA (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FIZ1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.920e-21
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP--DP--SHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRS-KRVVVQQDGASPH 390
            +VVH+DE  FYL + K    + P E  P   R++ K ++PK+MV+VA ARP  DP     FDGK+G W     + A+RSS NR  G       T++   Y++   + +LP+I+ K P   S +R+ VQQD ASPH
Sbjct:   30 DVVHVDEKLFYLSKVKRRCVLLPDEPKPVI-RLKSKRHIPKVMVLVAVARPRHDPVTGEFFDGKLGTWAFLKHEPAERSSCNRPAGTMVPCPVTVNKTSYREMLTELVLPSIRAKFPGAASGRRITVQQDNASPH 163          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6A3GHY1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GHY1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.020e-20
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP--DP--SHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRS-KRVVVQQDGASPH 390
            +VVH+DE  FYL + K    + P E  P   R++ K ++PK+MV+VA ARP  DP     FDGK+G W     + A+RSS NR  G       T++   Y++   + +LP+I+ K P   S +R+ VQQD ASPH
Sbjct:  175 DVVHVDEKLFYLSKVKRRCVLLPDEPKPVI-RLKSKRHIPKVMVLVAVARPRHDPVTGEFFDGKLGTWAFLKHEPAERSSCNRPAGTMVPCPVTVNKTSYREMLTELVLPSIRAKFPGAASGRRITVQQDNASPH 308          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6A4E0R9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E0R9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.740e-20
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANARP----DPSHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            NVVH+DE WFY+ R +    +  GE  P     ++K++  K+M +VA ARP         FDGK+G+W +   K A R+SKNR KG        +  + Y+     H++PAIK+   W   ++V+VQQD A PH
Sbjct:  161 NVVHVDEKWFYVHRNRNTYYLTRGETAPRAV-TKNKNHRTKVMFLVAVARPRYDAQQRMTFDGKVGLWPVVETKLAVRNSKNRPKGTPVTTPVEMTKDVYERMLTQHVIPAIKRV--WPDKEQVIVQQDNAPPH 291          
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Match: A0A6A4Z788_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z788_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.170e-20
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKS--YLPKIMVIVANARP--DPSHN--FDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWYIDHLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            +VVHLDE WF   +++  V + P E   AP R   KS  ++PK+M + A ARP  D      FDGK+G+W    +  A RSS+NR  G        ++A+ Y+D+ I+ ++PAIK   P   +KRV++QQD A+PH
Sbjct:  310 DVVHLDEKWFNADKDRRTVYLLPDE---APQRRSWKSKRFIPKVMFLAAVARPRFDEGRGVLFDGKVGMWPFTSLVPAVRSSRNRPAGTLVTTLVNVNAQVYRDYVINKVVPAIKASFP-STNKRVILQQDNATPH 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40213.10418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE2.290e-7571.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4GR72_9STRA7.600e-2341.04Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000E6FC5141.220e-2241.35uncharacterized protein LOC113324270 n=2 Tax=Papav... [more]
A0A397E5D7_9STRA1.100e-2141.79HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Ap... [more]
A0A8J2WWN0_9STRA4.230e-2137.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6A4YX26_9STRA4.910e-2141.04Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4FIZ1_9STRA6.920e-2140.74Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A6A3GHY1_9STRA1.020e-2040.74Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4E0R9_9STRA1.740e-2038.06Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A4Z788_9STRA2.170e-2040.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40213contigH-paniculata_contig40213:183..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue5.2e-21
Seed eggNOG ortholog67593.Physo125584
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QH7V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.6751266-CDS-H-paniculata_contig40213:182..5931622930231.6751266-CDS-H-paniculata_contig40213:182..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40213 183..593 -
1691481201.8789425-CDS-H-paniculata_contig40213:182..5931691481201.8789425-CDS-H-paniculata_contig40213:182..593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40213 183..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40213.10418.1prot_H-paniculata_contig40213.10418.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40213 183..593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40213.10418.1

>prot_H-paniculata_contig40213.10418.1 ID=prot_H-paniculata_contig40213.10418.1|Name=mRNA_H-paniculata_contig40213.10418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
NVVHLDESWFYLMREKENVRMFPGEEVPAPPRVQHKSYLPKIMVIVANAR
PDPSHNFDGKIGIWRICVMKTAQRSSKNRQKGEEYEFDCTIDAEWYKDWY
IDHLLPAIKKKMPWQRSKRVVVQQDGASPHTGRNNPT
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mRNA from alignment at H-paniculata_contig40213:183..593-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40213.10418.1 ID=mRNA_H-paniculata_contig40213.10418.1|Name=mRNA_H-paniculata_contig40213.10418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig40213:183..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTCGTTCACCTGGACGAAAGTTGGTTTTACCTCATGAGGGAGAAAGA GAATGTTCGAATGTTCCCAGGCGAGGAAGTACCCGCCCCCCCCCGTGTTC AACACAAGAGCTACCTTCCAAAGATCATGGTAATTGTGGCAAACGCTCGG CCGGACCCGAGCCACAACTTCGACGGCAAGATCGGTATCTGGCGCATTTG TGTCATGAAAACCGCCCAGCGATCGTCCAAGAACAGGCAGAAGGGCGAAG AGTACGAGTTCGACTGCACCATCGACGCGGAGTGGTACAAGGACTGGTAC ATCGACCATCTTCTACCTGCGATCAAGAAAAAGATGCCTTGGCAACGTTC AAAGCGTGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGGAGAA ACAATCCGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig40213:183..593-

>mRNA_H-paniculata_contig40213.10418.1 ID=mRNA_H-paniculata_contig40213.10418.1|Name=mRNA_H-paniculata_contig40213.10418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig40213:183..593- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTCGTTCACCTGGACGAAAGTTGGTTTTACCTCATGAGGGAGAAAGA
GAATGTTCGAATGTTCCCAGGCGAGGAAGTACCCGCCCCCCCCCGTGTTC
AACACAAGAGCTACCTTCCAAAGATCATGGTAATTGTGGCAAACGCTCGG
CCGGACCCGAGCCACAACTTCGACGGCAAGATCGGTATCTGGCGCATTTG
TGTCATGAAAACCGCCCAGCGATCGTCCAAGAACAGGCAGAAGGGCGAAG
AGTACGAGTTCGACTGCACCATCGACGCGGAGTGGTACAAGGACTGGTAC
ATCGACCATCTTCTACCTGCGATCAAGAAAAAGATGCCTTGGCAACGTTC
AAAGCGTGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGGAGAA
ACAATCCGACAAACGTCGTTCACCTGGACGAAAGTTGGTTTTACCTCATG
AGGGAGAAAGAGAATGTTCGAATGTTCCCAGGCGAGGAAGTACCCGCCCC
CCCCCGTGTTCAACACAAGAGCTACCTTCCAAAGATCATGGTAATTGTGG
CAAACGCTCGGCCGGACCCGAGCCACAACTTCGACGGCAAGATCGGTATC
TGGCGCATTTGTGTCATGAAAACCGCCCAGCGATCGTCCAAGAACAGGCA
GAAGGGCGAAGAGTACGAGTTCGACTGCACCATCGACGCGGAGTGGTACA
AGGACTGGTACATCGACCATCTTCTACCTGCGATCAAGAAAAAGATGCCT
TGGCAACGTTCAAAGCGTGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCA
CACGGGGAGAAACAATCCGACA
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