mRNA_H-paniculata_contig40210.10417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE) HSP 1 Score: 190 bits (482), Expect = 4.880e-53 Identity = 111/285 (38.95%), Postives = 152/285 (53.33%), Query Frame = 2
Query: 332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
ES K + R++MKDLG LS +LGI V + + I + YI +LK YG D+ V TPA+ V + P +P + +V SL+Y + TRPDIA V + NP + KRI RYL G NL + F N L GF D DWA D+ DR STTG + L+GGA+SW S+KQ V S+ EAEYVA + ++ +L LL +G + T + EDN+ AI ++K H RTKHI +R+H IRE + +G + L+Y T
Sbjct: 65 ESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPS-------TYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD-LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPT 340
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 184 bits (467), Expect = 4.130e-51 Identity = 112/282 (39.72%), Postives = 150/282 (53.19%), Query Frame = 2
Query: 347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITF--GGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
FK + F M DLG + LG+EV + I IS Y E LK YG +C V P ++ G+ G + + LV SL Y T TRPD+ Y+V+ + M NP E K I RY+ G GI + GG+ L G+VD D+A D DRKST+G+ GGA+SW S+KQ +VT S+TEAEYVAA Q ++ ++L IGFG T LF DN SAI +SK H R+KHI VR+H +RE + EG+++ +Y T
Sbjct: 46 FKKSMQEEFSMTDLGKMKYCLGVEV--IQDEAGIFISQRKYALETLKKYGMQDCNAVRNPMVPGNKLTKRGA--------GEEVDPTAYKQLVGSLRYL-TATRPDLIYSVNVVSRYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCST 313
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY) HSP 1 Score: 182 bits (462), Expect = 9.600e-51 Identity = 105/285 (36.84%), Postives = 149/285 (52.28%), Query Frame = 2
Query: 344 VFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPA---EGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITF-GGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
K D+ RF M DLG +LG+E+ R RP + +S Y+ + L YG +CR V TP + V +S KP + + SLMY GT PD+A+TV + P +E + R++RYL G + + + G + L G+VD DWA ++ DR+S TG+V ++ GA+SW S++Q SSTEAEY+A K+ +L L IG +G T L DN+SAI +SK + H RTKHI VR+H IRE G + +YV T
Sbjct: 13 TLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKPYQ------------SALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPT 285
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 187 bits (475), Expect = 1.200e-50 Identity = 107/285 (37.54%), Postives = 151/285 (52.98%), Query Frame = 2
Query: 332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
ES K + ++++MKD+G LS +LGI V + + N ++ + YI VL+ YG D+ V TPA+ V + P P + +V SL+Y + TRPDIA V + P + KRI RYL G NL + + + S L GF D DWA D DR+STTG + L GGA+SW S+KQ V S+ EAEYVA + ++ +L LL +G T + EDN+ AI ++K H RTKHI +R+H IRE + G + L+Y T
Sbjct: 205 ESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG-------TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQ-RSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPT 480
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM) HSP 1 Score: 185 bits (470), Expect = 1.250e-50 Identity = 99/289 (34.26%), Postives = 160/289 (55.36%), Query Frame = 2
Query: 344 VFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNIS---APGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIG-FGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
+ KH +S+RF M DLG L LG+E++ R +G +T+ +++ +L +G + + V TP + + ++ G K ++ R +V +LMY TRPD+A V + +PC + KR+ RYL P G+ F + +S G+ G+ D DWA D+ R+ST+GY +NGG +SW S+KQ+ V SSTEAEY+A E ++ +L L +G + ++EDN+ +I ++K H RTKHI +R+H +RE + +G + L+YV T +L
Sbjct: 103 LTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMK-----NVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDML 385
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 193 bits (491), Expect = 1.440e-50 Identity = 104/280 (37.14%), Postives = 162/280 (57.86%), Query Frame = 2
Query: 359 VSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
+ +F+++DLG +S +LG+ ++R R + T+TIS Y+ VLK + +EC+ V TP E ++P+ N E + ++ L Y +T TRPD+A V + M P +E + KRI RY+ G N GITF K + L G+ D DWA D R+ST+GY+ +++G +SWCS+KQ V+ SSTEAEY+A ++ +L LL +IG + ST + EDN++AI +S+ H RTKHI V +H +RE + + + + Y +T +L
Sbjct: 1055 IGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEML 1327
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6A3CT26_HIBSY (Putative galacturonosyltransferase 6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CT26_HIBSY) HSP 1 Score: 193 bits (490), Expect = 2.050e-50 Identity = 105/280 (37.50%), Postives = 165/280 (58.93%), Query Frame = 2
Query: 347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
K ++R F MKDLGS +++LG+++ R R N I +S +Y++++L + +C+ + TP +N S SE + + + V SLM+ TRPDIA V + M NP +E ++T KRI RY+ G N+ + +GG + G+VD D+A D+ KSTTGYV K+ GGA+SW S+ Q +V S+TEAEYVAA + K+ +L LL +G + +LF D++SA+++++ H RTKHI V++H IRE + EG + ++ + T
Sbjct: 929 LKAQLAREFEMKDLGSANKILGMQIHRDRSNRKIWLSQKNYLKKILSRFSMQDCKPISTPLP--INFKLSSSMSPSSEEERMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYGGSNLL--INGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQSVVATSTTEAEYVAATQASKEAIWLKMLLEELGHN-QEYVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVEEGTVDMQKIHT 1203
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A067SDP3_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SDP3_GALM3) HSP 1 Score: 187 bits (474), Expect = 2.540e-50 Identity = 108/283 (38.16%), Postives = 161/283 (56.89%), Query Frame = 2
Query: 347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISA---PGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
FK ++ + F++ DLG L +LGIEVRR R I +S SY+ +++ YGF++ + V P + V +++ P +T + + + I V SLMY S GTRPDI Y V + P + KRIFRYL+G NL +++GG+R L GF D D DR + +GY L+GGA+SW +++Q++++ S+TE+EYVAA K+ +L L+ + TTLF DN+SAI ++K+ H RTKHI +R+H IR + G L L Y T
Sbjct: 228 FKTEIVKHFKITDLGELHWILGIEVRRIREERRILLSQRSYLESIIRRYGFEDLKPVSIPMDPNVRLTSDQSPSTTQEFARMR-----DIPYHEAVGSLMYASLGTRPDITYAVQAVSRFASKPGIAHWDAVKRIFRYLNGSKNLWLSYGGQRKE--LVGFADAD-GNMAEDRHAISGYAFILHGGAISWTTKRQEIISLSTTESEYVAATHAAKEGLWLRSLITQLFATKLDPTTLFSDNQSAIALAKDHQYHARTKHIDIRFHFIRWIVENGSLRLVYCPT 502
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM) HSP 1 Score: 181 bits (460), Expect = 3.240e-50 Identity = 106/285 (37.19%), Postives = 149/285 (52.28%), Query Frame = 2
Query: 332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
E++ KH F M DLG + VLG+EV R TIT+S Y+ E+LK G+ + + TP +++ D P + + + + SLMY GTRPD+AYTV + P F+YL G + + F GK+ L G+VD DWA DV DR+S +GY L GGA+SW S+KQ SSTEAEY+ A K+ +L L IG C+ +T L DN+SA+ ++ H RTKHI +R+H +RE + G + L+YV T
Sbjct: 32 EAKEALKH----LFNMSDLGEVHWVLGLEVIHDRNARTITLSQCRYVEEILKCAGYSDACPIATPVLANEHMA---KVDAPEV------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPWE-LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPT 302
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 192 bits (488), Expect = 3.580e-50 Identity = 103/283 (36.40%), Postives = 159/283 (56.18%), Query Frame = 2
Query: 350 KHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
K +++RF+++D+G +S VLG+ V+R R T+TI+ Y+ VLK +G EC+ V TP E + D P + + E + + L Y + TRPD+A V + M P ++ + KR+ RY+ G + G+TF N+ L G+ D DW DV R+ST+GYV ++ +SWCS++Q V+ S+TEAEY+A ++ +L LL IG +T+FEDN+ AI +SK H RTKHI V +H IRE + ++ +KY +T +L
Sbjct: 1033 KEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVR-------EYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENML 1308 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40210.10417.1 >prot_H-paniculata_contig40210.10417.1 ID=prot_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp MYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFback to top mRNA from alignment at H-paniculata_contig40210:447..1728- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40210.10417.1 ID=mRNA_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1282bp|location=Sequence derived from alignment at H-paniculata_contig40210:447..1728- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40210:447..1728- >mRNA_H-paniculata_contig40210.10417.1 ID=mRNA_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig40210:447..1728- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |