mRNA_H-paniculata_contig40210.10417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40210.10417.1
Unique NamemRNA_H-paniculata_contig40210.10417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 190 bits (482), Expect = 4.880e-53
Identity = 111/285 (38.95%), Postives = 152/285 (53.33%), Query Frame = 2
Query:  332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
            ES    K  +  R++MKDLG LS +LGI V + +    I +    YI  +LK YG D+   V TPA+  V +        P +P          + +V SL+Y +  TRPDIA  V   +    NP     +  KRI RYL G  NL + F    N   L GF D DWA D+ DR STTG +  L+GGA+SW S+KQ  V  S+ EAEYVA  +  ++  +L  LL  +G   +  T + EDN+ AI ++K    H RTKHI +R+H IRE + +G + L+Y  T
Sbjct:   65 ESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPS-------TYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD-LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPT 340          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 184 bits (467), Expect = 4.130e-51
Identity = 112/282 (39.72%), Postives = 150/282 (53.19%), Query Frame = 2
Query:  347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITF--GGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
            FK  +   F M DLG +   LG+EV   +    I IS   Y  E LK YG  +C  V  P      ++  G+        G   +    + LV SL Y  T TRPD+ Y+V+  +  M NP  E     K I RY+ G    GI +  GG+     L G+VD D+A D  DRKST+G+     GGA+SW S+KQ +VT S+TEAEYVAA     Q  ++ ++L  IGFG    T LF DN SAI +SK    H R+KHI VR+H +RE + EG+++ +Y  T
Sbjct:   46 FKKSMQEEFSMTDLGKMKYCLGVEV--IQDEAGIFISQRKYALETLKKYGMQDCNAVRNPMVPGNKLTKRGA--------GEEVDPTAYKQLVGSLRYL-TATRPDLIYSVNVVSRYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCST 313          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 182 bits (462), Expect = 9.600e-51
Identity = 105/285 (36.84%), Postives = 149/285 (52.28%), Query Frame = 2
Query:  344 VFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPA---EGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITF-GGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
              K D+  RF M DLG    +LG+E+ R RP   + +S   Y+ + L  YG  +CR V TP    +  V +S      KP +              + SLMY   GT PD+A+TV   +     P +E +    R++RYL G  +  + + G  +    L G+VD DWA ++ DR+S TG+V  ++ GA+SW S++Q     SSTEAEY+A     K+  +L   L  IG   +G T L  DN+SAI +SK +  H RTKHI VR+H IRE    G +  +YV T
Sbjct:   13 TLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKPYQ------------SALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPT 285          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 187 bits (475), Expect = 1.200e-50
Identity = 107/285 (37.54%), Postives = 151/285 (52.98%), Query Frame = 2
Query:  332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
            ES    K  + ++++MKD+G LS +LGI V + + N ++ +    YI  VL+ YG D+   V TPA+  V +        P  P          + +V SL+Y +  TRPDIA  V   +     P     +  KRI RYL G  NL + +  +  S  L GF D DWA D  DR+STTG +  L GGA+SW S+KQ  V  S+ EAEYVA  +  ++  +L  LL  +G      T + EDN+ AI ++K    H RTKHI +R+H IRE +  G + L+Y  T
Sbjct:  205 ESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG-------TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQ-RSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRLLSDLGMDAT-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPT 480          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 185 bits (470), Expect = 1.250e-50
Identity = 99/289 (34.26%), Postives = 160/289 (55.36%), Query Frame = 2
Query:  344 VFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNIS---APGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIG-FGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
            + KH +S+RF M DLG L   LG+E++  R +G +T+    +++ +L  +G  + + V TP +  + ++     G        K     ++  R +V +LMY    TRPD+A  V   +    +PC   +   KR+ RYL   P  G+ F  + +S G+ G+ D DWA D+  R+ST+GY   +NGG +SW S+KQ+ V  SSTEAEY+A  E  ++  +L   L  +G      +  ++EDN+ +I ++K    H RTKHI +R+H +RE + +G + L+YV T  +L
Sbjct:  103 LTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMK-----NVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDML 385          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 193 bits (491), Expect = 1.440e-50
Identity = 104/280 (37.14%), Postives = 162/280 (57.86%), Query Frame = 2
Query:  359 VSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
            +  +F+++DLG +S +LG+ ++R R + T+TIS   Y+  VLK +  +EC+ V TP E           ++P+       N  E + ++  L Y +T TRPD+A  V   +  M  P +E +   KRI RY+ G  N GITF  K  +  L G+ D DWA D   R+ST+GY+ +++G  +SWCS+KQ  V+ SSTEAEY+A     ++  +L  LL +IG   + ST + EDN++AI +S+    H RTKHI V +H +RE + +  + + Y +T  +L
Sbjct: 1055 IGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEML 1327          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6A3CT26_HIBSY (Putative galacturonosyltransferase 6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CT26_HIBSY)

HSP 1 Score: 193 bits (490), Expect = 2.050e-50
Identity = 105/280 (37.50%), Postives = 165/280 (58.93%), Query Frame = 2
Query:  347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
             K  ++R F MKDLGS +++LG+++ R R N  I +S  +Y++++L  +   +C+ + TP    +N     S    SE +    + +     V SLM+    TRPDIA  V   +  M NP +E ++T KRI RY+ G  N+ + +GG      + G+VD D+A D+   KSTTGYV K+ GGA+SW S+ Q +V  S+TEAEYVAA +  K+  +L  LL  +G   +   +LF D++SA+++++    H RTKHI V++H IRE + EG + ++ + T
Sbjct:  929 LKAQLAREFEMKDLGSANKILGMQIHRDRSNRKIWLSQKNYLKKILSRFSMQDCKPISTPLP--INFKLSSSMSPSSEEERMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYGGSNLL--INGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQSVVATSTTEAEYVAATQASKEAIWLKMLLEELGHN-QEYVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVEEGTVDMQKIHT 1203          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A067SDP3_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SDP3_GALM3)

HSP 1 Score: 187 bits (474), Expect = 2.540e-50
Identity = 108/283 (38.16%), Postives = 161/283 (56.89%), Query Frame = 2
Query:  347 FKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISA---PGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
            FK ++ + F++ DLG L  +LGIEVRR R    I +S  SY+  +++ YGF++ + V  P +  V +++   P +T + +  +      I     V SLMY S GTRPDI Y V   +     P    +   KRIFRYL+G  NL +++GG+R    L GF D D      DR + +GY   L+GGA+SW +++Q++++ S+TE+EYVAA    K+  +L  L+  +       TTLF DN+SAI ++K+   H RTKHI +R+H IR  +  G L L Y  T
Sbjct:  228 FKTEIVKHFKITDLGELHWILGIEVRRIREERRILLSQRSYLESIIRRYGFEDLKPVSIPMDPNVRLTSDQSPSTTQEFARMR-----DIPYHEAVGSLMYASLGTRPDITYAVQAVSRFASKPGIAHWDAVKRIFRYLNGSKNLWLSYGGQRKE--LVGFADAD-GNMAEDRHAISGYAFILHGGAISWTTKRQEIISLSTTESEYVAATHAAKEGLWLRSLITQLFATKLDPTTLFSDNQSAIALAKDHQYHARTKHIDIRFHFIRWIVENGSLRLVYCPT 502          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 181 bits (460), Expect = 3.240e-50
Identity = 106/285 (37.19%), Postives = 149/285 (52.28%), Query Frame = 2
Query:  332 ESRRVFKHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQT 1186
            E++   KH     F M DLG +  VLG+EV   R   TIT+S   Y+ E+LK  G+ +   + TP     +++     D P        + +  +  + SLMY   GTRPD+AYTV   +     P           F+YL G  +  + F GK+    L G+VD DWA DV DR+S +GY   L GGA+SW S+KQ     SSTEAEY+ A    K+  +L   L  IG  C+ +T L  DN+SA+ ++     H RTKHI +R+H +RE +  G + L+YV T
Sbjct:   32 EAKEALKH----LFNMSDLGEVHWVLGLEVIHDRNARTITLSQCRYVEEILKCAGYSDACPIATPVLANEHMA---KVDAPEV------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPWE-LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPT 302          
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 192 bits (488), Expect = 3.580e-50
Identity = 103/283 (36.40%), Postives = 159/283 (56.18%), Query Frame = 2
Query:  350 KHDVSRRFRMKDLGSLSRVLGIEVRRYRPNGTITIS*GSYIREVLKIYGFDECRGVPTPAEGKVNISAPGSTDKPSEPKGRSGNSIECRGLVESLMYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITFGGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVTWSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSKESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLL 1198
            K  +++RF+++D+G +S VLG+ V+R R   T+TI+   Y+  VLK +G  EC+ V TP E      +    D P + +       E +  +  L Y +  TRPD+A  V   +  M  P ++ +   KR+ RY+ G  + G+TF    N+  L G+ D DW  DV  R+ST+GYV ++    +SWCS++Q  V+ S+TEAEY+A     ++  +L  LL  IG      +T+FEDN+ AI +SK    H RTKHI V +H IRE +   ++ +KY +T  +L
Sbjct: 1033 KEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVR-------EYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENML 1308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40210.10417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7JP25_9TELE4.880e-5338.95POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
UPI0006A737CF4.130e-5139.72uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A401H2X4_9APHY9.600e-5136.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0HFF8_LARCR1.200e-5037.54Copia protein Gag-int-pol protein Copia VLP protei... [more]
H3GB98_PHYRM1.250e-5034.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT1.440e-5037.14Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A3CT26_HIBSY2.050e-5037.50Putative galacturonosyltransferase 6 n=1 Tax=Hibis... [more]
A0A067SDP3_GALM32.540e-5038.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZSL8_9AGAM3.240e-5037.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT3.580e-5036.40Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40210contigH-paniculata_contig40210:447..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score150.2
Seed ortholog evalue1e-33
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1228
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40210.10417.1prot_H-paniculata_contig40210.10417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40210 447..1040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.611775-CDS-H-paniculata_contig40210:446..10401622930231.611775-CDS-H-paniculata_contig40210:446..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40210 447..1040 -
1691481201.8451788-CDS-H-paniculata_contig40210:446..10401691481201.8451788-CDS-H-paniculata_contig40210:446..1040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40210 447..1040 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.6249993-UTR-H-paniculata_contig40210:1040..10891622930231.6249993-UTR-H-paniculata_contig40210:1040..1089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40210 1041..1089 -
1691481201.8572226-UTR-H-paniculata_contig40210:1040..10891691481201.8572226-UTR-H-paniculata_contig40210:1040..1089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40210 1041..1089 -
1622930231.6364198-UTR-H-paniculata_contig40210:1143..17281622930231.6364198-UTR-H-paniculata_contig40210:1143..1728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40210 1144..1728 -
1691481201.8672764-UTR-H-paniculata_contig40210:1143..17281691481201.8672764-UTR-H-paniculata_contig40210:1143..1728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40210 1144..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40210.10417.1

>prot_H-paniculata_contig40210.10417.1 ID=prot_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MYTSTGTRPDIAYTVHQTAHRMGNPCREDFSTCKRIFRYLSGVPNLGITF
GGKRNSHGLEGFVDVDWAEDVGDRKSTTGYVSKLNGGAMSWCSRKQQLVT
WSSTEAEYVAAGETGKQTAYLGDLLRSIGFGCRGSTTLFEDNKSAINVSK
ESGAHCRTKHIGVRWHGIREWLGEGVLALKYVQTATLLTFSQKDQAE*
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mRNA from alignment at H-paniculata_contig40210:447..1728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40210.10417.1 ID=mRNA_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1282bp|location=Sequence derived from alignment at H-paniculata_contig40210:447..1728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCCGAACATGATTTCGAACTAGAAGGTATGGACATAGATACGGTGTA TTTGAACGCTCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGT TTTCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGCACAAGCC TGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAGTAACACTCTTGACGAT TTTCTTATTGGGATAGGACTCCAATGTTCCACTACCGACTCATGCTTGTA CTTCTGTCGCGACGAAGCGGGAGAGACAGACATTCTCGTGGCCATCTATG TTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTGTTCA AGCACGACGTAAGTCGTCGTTTTAGGATGAAAGACTTGGGTTCTCTCTCG CGCGTGTTGGGAATAGAAGTACGACGGTACCGTCCTAATGGTACCATAAC CATCTCGTAGGGTAGCTACATCCGCGAGGTACTAAAAATATACGGTTTTG ACGAGTGTCGAGGGGTACCCACCCCTGCAGAGGGTAAAGTGAATATTTCG GCACCCGGATCGACCGACAAGCCCTCCGAACCGAAGTAAACCGGGGCCGT ACTGTCGGACATAGGCGCATGAGTACAAGAAAGCAGCAGAGGGAGAAGTG GCAATTCAATTGAATGCAGAGGCTTGGTAGAATCCCTCATGTACACCTCA ACAGGAACTAGACCTGATATAGCATACACGGTACACCAAACAGCACATCG TATGGGAAACCCATGTCGGGAAGACTTCAGTACATGCAAGCGCATTTTTC GTTATCTCAGTGGGGTGCCTAACCTCGGCATTACGTTCGGCGGTAAGAGA AATAGTCACGGTTTGGAAGGATTCGTTGACGTCGATTGGGCGGAAGATGT CGGGGACCGAAAGTCCACAACAGGATACGTGTCCAAGCTGAACGGTGGTG CGATGAGTTGGTGCTCTAGGAAACAACAGTTAGTCACATGGTCCAGTACA GAGGCAGAGTACGTTGCTGCAGGAGAAACGGGAAAGCAGACGGCCTATCT TGGGGATTTACTAAGATCGATAGGTTTCGGATGCAGGGGGAGCACGACAT TGTTTGAGGACAATAAATCAGCTATTAATGTCAGTAAGGAATCTGGTGCG CACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTG GCTTGGCGAAGGAGTATTGGCATTGAAATATGTGCAGACTGCCACCTTGC TGACATTTTCACAAAAGGACCAAGCAGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40210:447..1728-

>mRNA_H-paniculata_contig40210.10417.1 ID=mRNA_H-paniculata_contig40210.10417.1|Name=mRNA_H-paniculata_contig40210.10417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig40210:447..1728- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACACCTCAACAGGAACTAGACCTGATATAGCATACACGGTACACCA
AACAGCACATCGTATGGGAAACCCATGTCGGGAAGACTTCAGTACATGCA
AGCGCATTTTTCGTTATCTCAGTGGGGTGCCTAACCTCGGCATTACGTTC
GGCGGTAAGAGAAATAGTCACGGTTTGGAAGGATTCGTTGACGTCGATTG
GGCGGAAGATGTCGGGGACCGAAAGTCCACAACAGGATACGTGTCCAAGC
TGAACGGTGGTGCGATGAGTTGGTGCTCTAGGAAACAACAGTTAGTCACA
TGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAACGGGAAAGCA
GACGGCCTATCTTGGGGATTTACTAAGATCGATAGGTTTCGGATGCAGGG
GGAGCACGACATTGTTTGAGGACAATAAATCAGCTATTAATGTCAGTAAG
GAATCTGGTGCGCACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGG
AATTCGAGAGTGGCTTGGCGAAGGAGTATTGGCATTGAAATATGTGCAGA
CTGCCACCTTGCTGACATTTTCACAAAAGGACCAAGCAGAGTAAATGTAC
ACCTCAACAGGAACTAGACCTGATATAGCATACACGGTACACCAAACAGC
ACATCGTATGGGAAACCCATGTCGGGAAGACTTCAGTACATGCAAGCGCA
TTTTTCGTTATCTCAGTGGGGTGCCTAACCTCGGCATTACGTTCGGCGGT
AAGAGAAATAGTCACGGTTTGGAAGGATTCGTTGACGTCGATTGGGCGGA
AGATGTCGGGGACCGAAAGTCCACAACAGGATACGTGTCCAAGCTGAACG
GTGGTGCGATGAGTTGGTGCTCTAGGAAACAACAGTTAGTCACATGGTCC
AGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAACGGGAAAGCAGACGGC
CTATCTTGGGGATTTACTAAGATCGATAGGTTTCGGATGCAGGGGGAGCA
CGACATTGTTTGAGGACAATAAATCAGCTATTAATGTCAGTAAGGAATCT
GGTGCGCACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCG
AGAGTGGCTTGGCGAAGGAGTATTGGCATTGAAATATGTGCAGACTGCCA
CCTTGCTGACATTTTCACAAAAGGACCAAGCAGAGTAA
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