mRNA_H-paniculata_contig4006.10390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4006.10390.1
Unique NamemRNA_H-paniculata_contig4006.10390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:10871..11447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.7499707-UTR-H-paniculata_contig4006:10870..108741622930227.7499707-UTR-H-paniculata_contig4006:10870..10874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 10871..10874 +
1691481199.9845626-UTR-H-paniculata_contig4006:10870..108741691481199.9845626-UTR-H-paniculata_contig4006:10870..10874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 10871..10874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.7654667-CDS-H-paniculata_contig4006:10874..114471622930227.7654667-CDS-H-paniculata_contig4006:10874..11447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 10875..11447 +
1691481199.9940126-CDS-H-paniculata_contig4006:10874..114471691481199.9940126-CDS-H-paniculata_contig4006:10874..11447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 10875..11447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10390.1prot_H-paniculata_contig4006.10390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4006 10875..11447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4006.10390.1

>prot_H-paniculata_contig4006.10390.1 ID=prot_H-paniculata_contig4006.10390.1|Name=mRNA_H-paniculata_contig4006.10390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MAGAVGGGAAEKTSQQARWRDENGDGFPSRALRRPSTGLALSSAASSPPA
PPFNGAASKGQQLNGDGVGRVFRGDVETPSPASTDISTVSAAASRETGES
ADGDGRRRGRGSVLGLLATTVAEASPSSSTAALAAANNTGRKRQRAPLPS
SPSAAPESTVPSVAAAAAAAAAIGTPLLGYTPSSSERQKAG
back to top

mRNA from alignment at H-paniculata_contig4006:10871..11447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4006.10390.1 ID=mRNA_H-paniculata_contig4006.10390.1|Name=mRNA_H-paniculata_contig4006.10390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=577bp|location=Sequence derived from alignment at H-paniculata_contig4006:10871..11447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCATGGCCGGGGCGGTGGGAGGGGGGGCGGCGGAGAAAACTTCGCAGC
AAGCGCGGTGGAGAGACGAGAACGGCGACGGTTTTCCCTCCCGCGCTTTG
CGTCGACCTTCGACAGGACTGGCGCTGTCATCGGCCGCATCATCACCGCC
AGCCCCTCCGTTCAATGGTGCTGCCTCCAAGGGTCAACAACTCAACGGTG
ATGGTGTCGGTCGTGTATTTAGAGGAGATGTCGAGACCCCGTCGCCCGCC
TCTACCGACATTTCCACCGTTTCCGCCGCTGCTTCGCGTGAAACCGGAGA
GTCGGCAGACGGGGACGGCCGGAGAAGAGGGAGGGGAAGCGTTCTGGGCT
TGCTGGCGACCACGGTTGCCGAGGCGTCGCCTTCATCATCCACGGCGGCT
TTGGCAGCGGCGAATAACACTGGGAGGAAGAGACAGCGAGCGCCTCTTCC
TTCTTCGCCCTCTGCAGCACCCGAATCAACGGTCCCATCAGTAGCAGCAG
CGGCAGCAGCAGCAGCAGCAATCGGCACACCGCTACTAGGCTACACTCCA
TCTTCTTCCGAGCGTCAAAAAGCAGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4006:10871..11447+

>mRNA_H-paniculata_contig4006.10390.1 ID=mRNA_H-paniculata_contig4006.10390.1|Name=mRNA_H-paniculata_contig4006.10390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig4006:10871..11447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGGGGCGGTGGGAGGGGGGGCGGCGGAGAAAACTTCGCAGCAAGC
GCGGTGGAGAGACGAGAACGGCGACGGTTTTCCCTCCCGCGCTTTGCGTC
GACCTTCGACAGGACTGGCGCTGTCATCGGCCGCATCATCACCGCCAGCC
CCTCCGTTCAATGGTGCTGCCTCCAAGGGTCAACAACTCAACGGTGATGG
TGTCGGTCGTGTATTTAGAGGAGATGTCGAGACCCCGTCGCCCGCCTCTA
CCGACATTTCCACCGTTTCCGCCGCTGCTTCGCGTGAAACCGGAGAGTCG
GCAGACGGGGACGGCCGGAGAAGAGGGAGGGGAAGCGTTCTGGGCTTGCT
GGCGACCACGGTTGCCGAGGCGTCGCCTTCATCATCCACGGCGGCTTTGG
CAGCGGCGAATAACACTGGGAGGAAGAGACAGCGAGCGCCTCTTCCTTCT
TCGCCCTCTGCAGCACCCGAATCAACGGTCCCATCAGTAGCAGCAGCGGC
AGCAGCAGCAGCAGCAATCGGCACACCGCTACTAGGCTACACTCCATCTT
CTTCCGAGCGTCAAAAAGCAGGAATGGCCGGGGCGGTGGGAGGGGGGGCG
GCGGAGAAAACTTCGCAGCAAGCGCGGTGGAGAGACGAGAACGGCGACGG
TTTTCCCTCCCGCGCTTTGCGTCGACCTTCGACAGGACTGGCGCTGTCAT
CGGCCGCATCATCACCGCCAGCCCCTCCGTTCAATGGTGCTGCCTCCAAG
GGTCAACAACTCAACGGTGATGGTGTCGGTCGTGTATTTAGAGGAGATGT
CGAGACCCCGTCGCCCGCCTCTACCGACATTTCCACCGTTTCCGCCGCTG
CTTCGCGTGAAACCGGAGAGTCGGCAGACGGGGACGGCCGGAGAAGAGGG
AGGGGAAGCGTTCTGGGCTTGCTGGCGACCACGGTTGCCGAGGCGTCGCC
TTCATCATCCACGGCGGCTTTGGCAGCGGCGAATAACACTGGGAGGAAGA
GACAGCGAGCGCCTCTTCCTTCTTCGCCCTCTGCAGCACCCGAATCAACG
GTCCCATCAGTAGCAGCAGCGGCAGCAGCAGCAGCAGCAATCGGCACACC
GCTACTAGGCTACACTCCATCTTCTTCCGAGCGTCAAAAAGCAGGA
back to top