mRNA_H-paniculata_contig4006.10389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4006.10389.1
Unique NamemRNA_H-paniculata_contig4006.10389.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4006.10389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4006contigH-paniculata_contig4006:10310..10757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.645672-UTR-H-paniculata_contig4006:10309..103191622930227.645672-UTR-H-paniculata_contig4006:10309..10319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 10310..10319 +
1691481199.9634354-UTR-H-paniculata_contig4006:10309..103191691481199.9634354-UTR-H-paniculata_contig4006:10309..10319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4006 10310..10319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930227.662604-CDS-H-paniculata_contig4006:10319..107571622930227.662604-CDS-H-paniculata_contig4006:10319..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 10320..10757 +
1691481199.9760036-CDS-H-paniculata_contig4006:10319..107571691481199.9760036-CDS-H-paniculata_contig4006:10319..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4006 10320..10757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4006.10389.1prot_H-paniculata_contig4006.10389.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4006 10320..10757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4006.10389.1

>prot_H-paniculata_contig4006.10389.1 ID=prot_H-paniculata_contig4006.10389.1|Name=mRNA_H-paniculata_contig4006.10389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MERFRTYGATWHERNDGSTSVLPDDDSDDPRTGIAGFHRPRGLRHPDMNK
AHASSYSSHTRRGGDSLVEPSRDVGGSRLPPNPATSATFARILTPARSSG
GGSQQQGFSLFGGAAFSTPGSSGSAATQICGAATPSSSSSSSGGDG
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mRNA from alignment at H-paniculata_contig4006:10310..10757+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4006.10389.1 ID=mRNA_H-paniculata_contig4006.10389.1|Name=mRNA_H-paniculata_contig4006.10389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=448bp|location=Sequence derived from alignment at H-paniculata_contig4006:10310..10757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACTTCCCCATGGAGCGATTCAGGACTTATGGCGCCACCTGGCATGAAC
GCAACGACGGCAGCACCAGCGTGCTACCAGACGACGATAGTGATGATCCC
CGTACAGGCATCGCCGGGTTCCATCGTCCACGGGGCCTCCGCCATCCCGA
CATGAACAAAGCCCATGCTTCTTCCTATTCTTCCCACACGCGGCGCGGCG
GTGACTCCCTGGTAGAACCCTCACGAGATGTGGGCGGCAGTCGACTCCCC
CCCAACCCGGCCACCTCTGCCACTTTTGCGAGAATACTGACGCCGGCAAG
GTCCTCCGGCGGCGGCTCCCAGCAGCAGGGATTCAGCCTCTTCGGCGGTG
CCGCGTTTTCCACCCCCGGCAGTAGTGGTAGCGCGGCCACGCAAATATGC
GGCGCCGCCACACCTTCTTCTTCCTCCTCGTCCAGTGGGGGTGATGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4006:10310..10757+

>mRNA_H-paniculata_contig4006.10389.1 ID=mRNA_H-paniculata_contig4006.10389.1|Name=mRNA_H-paniculata_contig4006.10389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig4006:10310..10757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGATTCAGGACTTATGGCGCCACCTGGCATGAACGCAACGACGG
CAGCACCAGCGTGCTACCAGACGACGATAGTGATGATCCCCGTACAGGCA
TCGCCGGGTTCCATCGTCCACGGGGCCTCCGCCATCCCGACATGAACAAA
GCCCATGCTTCTTCCTATTCTTCCCACACGCGGCGCGGCGGTGACTCCCT
GGTAGAACCCTCACGAGATGTGGGCGGCAGTCGACTCCCCCCCAACCCGG
CCACCTCTGCCACTTTTGCGAGAATACTGACGCCGGCAAGGTCCTCCGGC
GGCGGCTCCCAGCAGCAGGGATTCAGCCTCTTCGGCGGTGCCGCGTTTTC
CACCCCCGGCAGTAGTGGTAGCGCGGCCACGCAAATATGCGGCGCCGCCA
CACCTTCTTCTTCCTCCTCGTCCAGTGGGGGTGATGGAATGGAGCGATTC
AGGACTTATGGCGCCACCTGGCATGAACGCAACGACGGCAGCACCAGCGT
GCTACCAGACGACGATAGTGATGATCCCCGTACAGGCATCGCCGGGTTCC
ATCGTCCACGGGGCCTCCGCCATCCCGACATGAACAAAGCCCATGCTTCT
TCCTATTCTTCCCACACGCGGCGCGGCGGTGACTCCCTGGTAGAACCCTC
ACGAGATGTGGGCGGCAGTCGACTCCCCCCCAACCCGGCCACCTCTGCCA
CTTTTGCGAGAATACTGACGCCGGCAAGGTCCTCCGGCGGCGGCTCCCAG
CAGCAGGGATTCAGCCTCTTCGGCGGTGCCGCGTTTTCCACCCCCGGCAG
TAGTGGTAGCGCGGCCACGCAAATATGCGGCGCCGCCACACCTTCTTCTT
CCTCCTCGTCCAGTGGGGGTGATGGA
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