mRNA_H-paniculata_contig4003.10379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4003.10379.1
Unique NamemRNA_H-paniculata_contig4003.10379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: D7FVL3_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 5.180e-48
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 3 
Query:  582 GGDVAGYETGVIDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVRLLE 917
            G + AG   G IDEDLYSRQLYVMGK+AM KMGKADVLISGMSGLGAEVAKN++LAGVRSVTLHDDRPA+ EDLSS F +G + A RG  RARASVDHLRELNPYVDVRL+E
Sbjct:   14 GNEAAGDGAGGIDEDLYSRQLYVMGKTAMAKMGKADVLISGMSGLGAEVAKNVVLAGVRSVTLHDDRPATLEDLSSQFCLGPEAAERGEGRARASVDHLRELNPYVDVRLVE 125
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A835Z5W8_9STRA (UBA_e1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.290e-33
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 3 
Query:  474 KGSNCASEDEAVSGSGSGVARQWQSPQRRALT-FRGGGGDVAGYETGVIDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVRLL 914
            +G +  S+DE  SG      +    PQR             A  +   +DE LYSRQLYVMGK AM++MGK+DVLI+G+SGLGAE+AKN+ILAGV+SVTLHD+RPA+  DL+SHF +  D+   G PRA  S+  LRELNPYV+VRLL
Sbjct:   43 RGGSAGSQDEYFSGGSIPAYQDGYQPQRNQHDPHEPQQHKEAEEDAPALDEALYSRQLYVMGKDAMLRMGKSDVLITGLSGLGAEIAKNVILAGVKSVTLHDERPATWNDLASHFCLSPDSV--GKPRAEESLAFLRELNPYVEVRLL 188
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: H3G877_PHYRM (E1 ubiquitin-activating enzyme n=33 Tax=Phytophthora TaxID=4783 RepID=H3G877_PHYRM)

HSP 1 Score: 124 bits (312), Expect = 1.300e-27
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 3 
Query:  603 ETGVIDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            ++G IDE LYSRQLYVMG+ A ++MG ++VLI G++GLG E+AKN+ILAGV+SVTLHDD PAST DL+S F + E  A  G PRA  S++ L ELNPYV VR
Sbjct:    5 QSGSIDEGLYSRQLYVMGREAQLRMGASNVLIVGLNGLGVEIAKNVILAGVKSVTLHDDTPASTLDLASQFYLTE--ADVGKPRAAVSLNKLAELNPYVPVR 104
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A3R7H2J5_9STRA (E1 ubiquitin-activating enzyme n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H2J5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.420e-27
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:  606 TGVIDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            T  IDE LYSRQLYVMG+ A V+MG+++VLI G +GLG E+AKN++LAGV+SVTLHDD PAS+ DL+S F + E  A  G PRA  SV  L ELNPYV VR
Sbjct:   57 TATIDEGLYSRQLYVMGREAQVRMGESNVLIVGQNGLGVEIAKNVVLAGVKSVTLHDDTPASSLDLASQFYLTE--ADIGKPRATVSVQKLAELNPYVPVR 155
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A662X664_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X664_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.140e-27
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 3 
Query:  615 IDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            IDE LYSRQLYVMG+ A ++MG A+VLI G++GLG E+AKN+ILAGV+SVTLHDD PAS  DL+S F + E  A  G PRA  SV  L ELNPYV VR
Sbjct:   70 IDESLYSRQLYVMGREAQLRMGAANVLIVGLNGLGVEIAKNVILAGVKSVTLHDDTPASALDLASQFYLTE--ADIGKPRAAVSVKKLAELNPYVPVR 165
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A0P1AKC3_PLAHL (E1 ubiquitin-activating enzyme n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKC3_PLAHL)

HSP 1 Score: 121 bits (303), Expect = 1.980e-26
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 3 
Query:  615 IDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            IDE LYSRQLYVMG+ A ++MG +DVLI G+ GLG E+AKN+ILAGV+SVT+HDD PAS  DL+S F + E  A  G PRA  SV  L ELNPYV VR
Sbjct:   39 IDEGLYSRQLYVMGREAQLRMGSSDVLIVGLDGLGVEIAKNVILAGVKSVTVHDDTPASMLDLASQFYLTE--ADIGIPRAAVSVKKLAELNPYVPVR 134
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: UPI001895D284 (ubiquitin-like modifier-activating enzyme 1 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895D284)

HSP 1 Score: 114 bits (285), Expect = 2.570e-26
Identity = 59/98 (60.20%), Postives = 73/98 (74.49%), Query Frame = 3 
Query:  615 IDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            IDE+LYSRQLYV+G+ AM +M ++DVLISGM GLG E+AKNIILAGVRSVT+HD+   +  DLSS + +GEDT   G  RA A    L +LN YV V+
Sbjct:   51 IDENLYSRQLYVLGREAMARMAQSDVLISGMGGLGVEIAKNIILAGVRSVTIHDEAVCTAGDLSSQYFLGEDTI--GENRASACEASLAQLNQYVQVK 146
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A484E6T1_BRELC (E1 ubiquitin-activating enzyme n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6T1_BRELC)

HSP 1 Score: 120 bits (300), Expect = 4.870e-26
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  588 DVAGYETGVIDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            +V    T  IDE LYSRQLYVMG  A ++MG ++VL+ G++GLG E+AKN+ILAGV++VTLHDD PA+  DL+S F + E  A  G PRA ASV  L ELNPYV VR
Sbjct:   30 EVDQISTASIDEGLYSRQLYVMGHEAQLRMGASNVLVVGLNGLGVEIAKNVILAGVKAVTLHDDTPANMLDLASQFYLAE--ADIGKPRAAASVKKLAELNPYVPVR 134
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: W2NN34_PHYPR (E1 ubiquitin-activating enzyme n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NN34_PHYPR)

HSP 1 Score: 119 bits (299), Expect = 5.650e-26
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 3 
Query:  615 IDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVR 908
            IDE LYSRQLYVMG+ A ++MG ++VLI G++GLG E+AKN+ILAGV+SVTLHDD PAS  DL+S F + E     G PRA  SV  L ELNPYV VR
Sbjct:   51 IDEGLYSRQLYVMGREAQLRMGTSNVLIVGLNGLGVEIAKNVILAGVKSVTLHDDTPASKLDLASQFYLTE--GDMGKPRAAVSVKKLAELNPYVPVR 146
[Close]
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Match: A0A1R1PUC3_ZANCU (Ubiquitin-activating enzyme E1 1 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PUC3_ZANCU)

HSP 1 Score: 111 bits (278), Expect = 5.790e-26
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 3 
Query:  615 IDEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVTLHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVRLLEMSPK 929
            IDE LYSRQLYV+G  AM KMG +D+LI G+ GLG E+AKN+ LAGV+S+T+HD      +DL + + + E+    G PRA+ +   L ELNPYV + +LE  P+
Sbjct:   12 IDEGLYSRQLYVLGVEAMKKMGSSDILIVGVKGLGVEIAKNVALAGVKSITIHDPESVKVQDLGTQYFLAEEDI--GKPRAQVTATKLAELNPYVKISVLEQRPQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4003.10379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL3_ECTSI5.180e-4879.46ThiF domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z5W8_9STRA3.290e-3353.38UBA_e1_C domain-containing protein n=1 Tax=Tribone... [more]
H3G877_PHYRM1.300e-2762.75E1 ubiquitin-activating enzyme n=33 Tax=Phytophtho... [more]
A0A3R7H2J5_9STRA2.420e-2763.37E1 ubiquitin-activating enzyme n=4 Tax=Phytophthor... [more]
A0A662X664_9STRA6.140e-2765.31Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A0P1AKC3_PLAHL1.980e-2664.29E1 ubiquitin-activating enzyme n=1 Tax=Plasmopara ... [more]
UPI001895D2842.570e-2660.20ubiquitin-like modifier-activating enzyme 1 n=1 Ta... [more]
A0A484E6T1_BRELC4.870e-2658.88E1 ubiquitin-activating enzyme n=1 Tax=Bremia lact... [more]
W2NN34_PHYPR5.650e-2663.27E1 ubiquitin-activating enzyme n=8 Tax=Phytophthor... [more]
A0A1R1PUC3_ZANCU5.790e-2650.48Ubiquitin-activating enzyme E1 1 n=1 Tax=Zancudomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4003contigH-paniculata_contig4003:3956..7501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7FVL3
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-15_003730.1
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons3
Model size1071
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4003.10379.1prot_H-paniculata_contig4003.10379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4003 4059..7484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.7024302-UTR-H-paniculata_contig4003:3955..40581622930226.7024302-UTR-H-paniculata_contig4003:3955..4058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 3956..4058 -
1691481199.503744-UTR-H-paniculata_contig4003:3955..40581691481199.503744-UTR-H-paniculata_contig4003:3955..4058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 3956..4058 -
1622930226.7649965-UTR-H-paniculata_contig4003:7484..75011622930226.7649965-UTR-H-paniculata_contig4003:7484..7501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 7485..7501 -
1691481199.551217-UTR-H-paniculata_contig4003:7484..75011691481199.551217-UTR-H-paniculata_contig4003:7484..7501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4003 7485..7501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.7201838-CDS-H-paniculata_contig4003:4058..41091622930226.7201838-CDS-H-paniculata_contig4003:4058..4109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 4059..4109 -
1691481199.5254555-CDS-H-paniculata_contig4003:4058..41091691481199.5254555-CDS-H-paniculata_contig4003:4058..4109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 4059..4109 -
1622930226.732137-CDS-H-paniculata_contig4003:4840..50481622930226.732137-CDS-H-paniculata_contig4003:4840..5048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 4841..5048 -
1691481199.5340662-CDS-H-paniculata_contig4003:4840..50481691481199.5340662-CDS-H-paniculata_contig4003:4840..5048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 4841..5048 -
1622930226.74702-CDS-H-paniculata_contig4003:6792..74841622930226.74702-CDS-H-paniculata_contig4003:6792..7484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 6793..7484 -
1691481199.5423295-CDS-H-paniculata_contig4003:6792..74841691481199.5423295-CDS-H-paniculata_contig4003:6792..7484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4003 6793..7484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4003.10379.1

>prot_H-paniculata_contig4003.10379.1 ID=prot_H-paniculata_contig4003.10379.1|Name=mRNA_H-paniculata_contig4003.10379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=317bp
MRAATLLSPIFILSLTTECTSNVSLGNLGGGAAGARRTLSPSPTAEHSTS
KASAEILGASTAAVALLRALAELRQPAAATVATKATGGEALPLHATRPAA
RGHLHSPLHLLISPARLGTDDITAFSAHRSTASAAPTKLSAETTAVSLKS
CTKGSNCASEDEAVSGSGSGVARQWQSPQRRALTFRGGGGDVAGYETGVI
DEDLYSRQLYVMGKSAMVKMGKADVLISGMSGLGAEVAKNIILAGVRSVT
LHDDRPASTEDLSSHFAIGEDTAARGTPRARASVDHLRELNPYVDVRLLE
MSPKLMTVLVKVQQAL*
back to top

mRNA from alignment at H-paniculata_contig4003:3956..7501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4003.10379.1 ID=mRNA_H-paniculata_contig4003.10379.1|Name=mRNA_H-paniculata_contig4003.10379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3546bp|location=Sequence derived from alignment at H-paniculata_contig4003:3956..7501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTACGTCGCGGGTCATGAGGGCTGCAACGCTACTTTCTCCAATATTT
ATCTTGTCGTTAACCACAGAATGCACAAGCAATGTTTCTCTCGGTAACCT
GGGTGGCGGCGCTGCCGGCGCACGAAGAACTTTGTCACCATCACCAACAG
CCGAACACTCCACCTCCAAAGCTTCGGCGGAGATACTTGGCGCCTCCACA
GCAGCCGTAGCATTATTACGGGCATTGGCGGAGTTGCGGCAACCTGCTGC
TGCTACGGTGGCGACAAAAGCCACTGGCGGAGAAGCTCTGCCGCTACACG
CTACTCGTCCTGCTGCTCGCGGGCATCTGCATTCGCCACTGCACCTGCTT
ATTTCTCCAGCACGACTCGGTACTGATGATATTACTGCGTTTAGTGCACA
CCGCTCTACTGCTTCTGCTGCTCCCACGAAGCTGTCCGCAGAGACGACCG
CAGTGTCGTTGAAGAGCTGCACAAAAGGAAGCAATTGTGCGTCGGAAGAC
GAGGCTGTTTCTGGAAGTGGTAGCGGTGTTGCTCGACAATGGCAGTCACC
ACAGCGACGGGCGTTGACTTTTCGCGGTGGTGGTGGTGATGTGGCTGGAT
ATGAAACAGGCGTAATCGACGAGGATTTGTACTCGAGGCAGCTCTACGTG
ATGGGGAAGTCGGCCATGGTCAAGATGGGCAAGGCAGACGTGCTTATATC
GGGCATGAGGTATATCCGCGTGTTTGTGATTGGGTGTGATGGGTGTCGGC
GGTGTTTAAGACAGGTTACAAAGGTCCTGTTGGAGTGCTTGTATTATGCA
TATACTTCTAAGATATAACCCGCCATAGGCGGCAGACACATGTTTCGAGG
TTACTGCCAGAGGTGAACAGCAGAGTTGCCGTAACGGCCGACTGTGTCTG
TTCGCCAGCTCCCGTACAAAGAGATTCAAAGGTGTTTACCACAAGTTTTG
TAGCCCATCCGACTCATGCTGTAGCTTTGTAAACTGCAACGTACACATAT
AGAGTGTGCTAGCACCCCCGATGTACGTGAACCTACTAATAGATTGCGCT
GCAACGCTTGTTGTTCTAGCCACCAACAAACAGACCGGGGCACACCCGAC
GCAATCCCTCTTCAACCGCAGCACGTCTAGGTATCTTCGCACATCACTGT
ATTGTTGCAATACGTGCATCGATCGAACTGGCTTGGTGCGTTTGGTTGCA
ACAACAAGATCACCCCACACGAACAAGACCCAGCCCACGATTGGAGTATC
ATGTATGAACTCTTTCCATACCGAGCGACCCACTTGTGGTGGAAATCCAC
CGTTAAAGCTTTTAGACCTGGACCCAATCCAATCCCCGCAGAATCTCCAC
CTGAAAACAGGCGCACGCAAGTCGGTCTTTTTCCGCGACATGGCGCCTAC
GACATGATTACGGGGGTTGGAAGCCGAGATACAGACCACTCGTCTGGAGT
ACCACAGAGAGGAGAATTGACGTGGCATTGTTCTGCGTAGCGCCACTGCG
GCAGCATTCGACAGGAACGCAAAGTGCGCACCACACGCTGAGTAACTTAA
TAGCGCAGTGGTGTGTATGCCACTTTAAAAAGCTGCACAATAGGGTATGA
AATCAAACAAAACCACAACTCACACGGCGCTGTCTGAATATCAGCAGTAA
TACAGTCAAATGGTATAGACAGGAAAACATTAAAAGGGTTGGCATGATTG
CGCACCACAACTGCGATACTTGAGGTCAACGAAACCACACACCACATGCT
GAGTGACTGACTGTTTAGTTGTGTGGGCCACACAAAGCCATATATCAGGG
GCCTAGAATTAAACGCCTCATGTGCTCACATGAGGCATGACCTTGACTCG
AAACTCTAAAAATACCCACAAACTGTTACAAGAAATTTACTTGGGCCTAG
TTCGTTTGTATCCCTTGTACCCCCAAACGGGGACTAGACGAGGATTATGA
AGAAGAAAAACGTGGATATTTTTATAGTATCAAACGCTTAGTGATTGGCT
GCTACAACTACCCCCACACGTTTGTGATCTGCCTAAAGCCGTGCTATACG
GCGCGTTCTCGATTCAGAACAACGATTCATTTCCGGCGAGACTGTCAAAT
CCCGTTCTTATTCTGAATCTGGGCCCTGGGGTAAAAGCGTTTGAAACGCT
TTCCCAGACTAGTTCCAGTAACATTCCCTATGAACGACTCGTCCAGCAAT
CAAGATCTATACACGTGGTGTGCCTCCAACGAGACAAAAGTCCCTTTTCT
CTCTCGAAGATTCATGGACGGTTGTTACCCGACATAGATGAAGGTACAGC
AACTAAAAGGACTTTCTTGGTCTAGCAACCAAGACATGCAAAACATGACT
ATACCCCCTCTGCTCCTACCCTACCCCAACCCCACCCGCCACCGCCCCCT
CGCACGCTCCTTCCGTGTGTACCATCTCACCGCCCCCCCCCCGCCCCACA
CAGTGGACTGGGGGCGGAGGTAGCGAAGAATATCATCCTGGCGGGCGTGC
GCTCGGTCACCCTACACGACGACAGGCCCGCCTCAACCGAAGACTTGTCG
TCTCATTTCGCCATTGGCGAGGATACGGCCGCCAGAGGAACGCCGCGCGC
GCGGGCCAGCGTGGACCACCTCCGAGAGCTGAACCCCTACGTGGACGTGC
GATTGCTGGAGGTGGGTGGTCCGAAAGGACAGAGGGAGAGAAAAAGGAGG
CGAGGGGGCATTCTTGGTGCTTCATCGCGTGGGCTAGTCGGTGTGGTGCA
AGCAAATATCGATACAAATATTTCATTTTTATTTTGCACATACTCCTATA
TATGTATATGTAGACCAGGTCGAAATCTTAAAACGTGAAATTTTCTTCTC
TTTTTTTTTCGTATCTTTGTGACAACGGAGACAACACTTGTCAGATCGAC
ACGAAACTTTACACAGCGCAAGCTGGGGTGTGCAGCTACACAGCGAAGAG
ACGGCGGAAGGAATGGCCTGAAAGCTGACCCCAGACAACAATTTATCGAA
ATGTAGAGCCCATTAGGGGTTAGTTCCCTTTCCCTGTTTCCTTTTTTTTT
CGGTGATCAAGGTCTGACTCGAACTCACGATCTTGTGATCCAATGGCCAA
CGGGTCCTACCAGCGACGCCACTTGGTTCTGAGGATTTGTCCTCTACACA
TATTTGTGGGAACTCGTTCCTGTTTCTTTTTTAGGTTCTTGTTATCCAGA
TCACCCCCCCCTCCCCCTCTCTCTTCATAATTAACTTTTCCTGCAATATA
GCATGGTCTTTGGTTTGTTTGCGTCCAGCCCATCTTGGTGTTCGTTCTGT
GTTGCAAAGTCGTGTGACACCTCATTGATATTCACTTCGCGGTGGCATTC
GCGACGACTTCACCTGACCGAACACGTGCATGCTCGGAGTAGATGAGTCC
GAAGCTAATGACGGTGCTGGTCAAGGTCCAACAGGCGCTCTGACGAACTG
GTCAATACCGACGACCACCGAGAGACAGACTGGACGCGACCAAAGACTGC
CAAGTGGCAGGCTGGCGGAATAAACGTTCACAGGAGGGGAAGGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4003:3956..7501-

>mRNA_H-paniculata_contig4003.10379.1 ID=mRNA_H-paniculata_contig4003.10379.1|Name=mRNA_H-paniculata_contig4003.10379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at H-paniculata_contig4003:3956..7501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCTGCAACGCTACTTTCTCCAATATTTATCTTGTCGTTAACCAC
AGAATGCACAAGCAATGTTTCTCTCGGTAACCTGGGTGGCGGCGCTGCCG
GCGCACGAAGAACTTTGTCACCATCACCAACAGCCGAACACTCCACCTCC
AAAGCTTCGGCGGAGATACTTGGCGCCTCCACAGCAGCCGTAGCATTATT
ACGGGCATTGGCGGAGTTGCGGCAACCTGCTGCTGCTACGGTGGCGACAA
AAGCCACTGGCGGAGAAGCTCTGCCGCTACACGCTACTCGTCCTGCTGCT
CGCGGGCATCTGCATTCGCCACTGCACCTGCTTATTTCTCCAGCACGACT
CGGTACTGATGATATTACTGCGTTTAGTGCACACCGCTCTACTGCTTCTG
CTGCTCCCACGAAGCTGTCCGCAGAGACGACCGCAGTGTCGTTGAAGAGC
TGCACAAAAGGAAGCAATTGTGCGTCGGAAGACGAGGCTGTTTCTGGAAG
TGGTAGCGGTGTTGCTCGACAATGGCAGTCACCACAGCGACGGGCGTTGA
CTTTTCGCGGTGGTGGTGGTGATGTGGCTGGATATGAAACAGGCGTAATC
GACGAGGATTTGTACTCGAGGCAGCTCTACGTGATGGGGAAGTCGGCCAT
GGTCAAGATGGGCAAGGCAGACGTGCTTATATCGGGCATGAGATGAGGGC
TGCAACGCTACTTTCTCCAATATTTATCTTGTCGTTAACCACAGAATGCA
CAAGCAATGTTTCTCTCGGTAACCTGGGTGGCGGCGCTGCCGGCGCACGA
AGAACTTTGTCACCATCACCAACAGCCGAACACTCCACCTCCAAAGCTTC
GGCGGAGATACTTGGCGCCTCCACAGCAGCCGTAGCATTATTACGGGCAT
TGGCGGAGTTGCGGCAACCTGCTGCTGCTACGGTGGCGACAAAAGCCACT
GGCGGAGAAGCTCTGCCGCTACACGCTACTCGTCCTGCTGCTCGCGGGCA
TCTGCATTCGCCACTGCACCTGCTTATTTCTCCAGCACGACTCGGTACTG
ATGATATTACTGCGTTTAGTGCACACCGCTCTACTGCTTCTGCTGCTCCC
ACGAAGCTGTCCGCAGAGACGACCGCAGTGTCGTTGAAGAGCTGCACAAA
AGGAAGCAATTGTGCGTCGGAAGACGAGGCTGTTTCTGGAAGTGGTAGCG
GTGTTGCTCGACAATGGCAGTCACCACAGCGACGGGCGTTGACTTTTCGC
GGTGGTGGTGGTGATGTGGCTGGATATGAAACAGGCGTAATCGACGAGGA
TTTGTACTCGAGGCAGCTCTACGTGATGGGGAAGTCGGCCATGGTCAAGA
TGGGCAAGGCAGACGTGCTTATATCGGGCATGAGTGGACTGGGGGCGGAG
GTAGCGAAGAATATCATCCTGGCGGGCGTGCGCTCGGTCACCCTACACGA
CGACAGGCCCGCCTCAACCGAAGACTTGTCGTCTCATTTCGCCATTGGCG
AGGATACGGCCGCCAGAGGAACGCCGCGCGCGCGGGCCAGCGTGGACCAC
CTCCGAGAGCTGAACCCCTACGTGGACGTGCGATTGCTGGAGTGGACTGG
GGGCGGAGGTAGCGAAGAATATCATCCTGGCGGGCGTGCGCTCGGTCACC
CTACACGACGACAGGCCCGCCTCAACCGAAGACTTGTCGTCTCATTTCGC
CATTGGCGAGGATACGGCCGCCAGAGGAACGCCGCGCGCGCGGGCCAGCG
TGGACCACCTCCGAGAGCTGAACCCCTACGTGGACGTGCGATTGCTGGAG
ATGAGTCCGAAGCTAATGACGGTGCTGGTCAAGGTCCAACAGGCGCTCTG
AATGAGTCCGAAGCTAATGACGGTGCTGGTCAAGGTCCAACAGGCGCTCT
GA
back to top