mRNA_H-paniculata_contig40023.10378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40023.10378.1
Unique NamemRNA_H-paniculata_contig40023.10378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40023.10378.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.720e-8
Identity = 39/142 (27.46%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:    7 EELRENFSEPYIKNAHPTFQALIKSVEKCKQLQCALVIDGSPSGAWSIFEDWFRDTTSGERTRVRKEFENLAVQPNETPHEFLARSFVIVQRMKEIGVDMTETKVHHQIVRSLPHHFAIAKHMMLMKKNLSTKKLEEGVRTA 432
            EEL    S   ++    ++  LI SV     L   ++ DGSPSG W IF +++      E+ R+  ++  L ++  ETP ++  R  V+  R+   GV  ++   +  +V  L   + + K + +     S +K+E+GVR A
Sbjct:   60 EELPRVHSSDSVEKTITSWNLLITSVTYMPILT-QIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMMEKILTMSPIPRSREKIEKGVRDA 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40023.10378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE6.720e-827.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40023contigH-paniculata_contig40023:1224..1658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.6582096-CDS-H-paniculata_contig40023:1223..16581622930226.6582096-CDS-H-paniculata_contig40023:1223..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40023 1224..1658 +
1691481199.4923193-CDS-H-paniculata_contig40023:1223..16581691481199.4923193-CDS-H-paniculata_contig40023:1223..1658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40023 1224..1658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40023.10378.1prot_H-paniculata_contig40023.10378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40023 1224..1658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40023.10378.1

>prot_H-paniculata_contig40023.10378.1 ID=prot_H-paniculata_contig40023.10378.1|Name=mRNA_H-paniculata_contig40023.10378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
TEEELRENFSEPYIKNAHPTFQALIKSVEKCKQLQCALVIDGSPSGAWSI
FEDWFRDTTSGERTRVRKEFENLAVQPNETPHEFLARSFVIVQRMKEIGV
DMTETKVHHQIVRSLPHHFAIAKHMMLMKKNLSTKKLEEGVRTAK
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mRNA from alignment at H-paniculata_contig40023:1224..1658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40023.10378.1 ID=mRNA_H-paniculata_contig40023.10378.1|Name=mRNA_H-paniculata_contig40023.10378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig40023:1224..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGAGGAAGAACTGCGTGAGAATTTTTCTGAGCCATACATTAAAAACGC
CCATCCGACCTTTCAAGCACTGATCAAGTCAGTTGAGAAGTGTAAGCAAC
TGCAATGTGCATTGGTGATCGATGGCTCGCCGTCTGGGGCATGGAGTATT
TTTGAAGACTGGTTCAGAGACACAACATCTGGAGAACGTACTAGAGTTCG
AAAGGAATTTGAGAACTTGGCAGTACAGCCAAATGAGACACCCCATGAAT
TTCTGGCTAGATCTTTTGTCATTGTTCAGCGGATGAAGGAGATTGGTGTT
GACATGACAGAGACAAAAGTTCACCATCAGATCGTTCGTTCCCTGCCCCA
TCATTTCGCCATTGCGAAACACATGATGCTTATGAAAAAGAATTTGTCTA
CGAAAAAACTGGAAGAAGGGGTCCGAACTGCCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40023:1224..1658+

>mRNA_H-paniculata_contig40023.10378.1 ID=mRNA_H-paniculata_contig40023.10378.1|Name=mRNA_H-paniculata_contig40023.10378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig40023:1224..1658+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGAGGAAGAACTGCGTGAGAATTTTTCTGAGCCATACATTAAAAACGC
CCATCCGACCTTTCAAGCACTGATCAAGTCAGTTGAGAAGTGTAAGCAAC
TGCAATGTGCATTGGTGATCGATGGCTCGCCGTCTGGGGCATGGAGTATT
TTTGAAGACTGGTTCAGAGACACAACATCTGGAGAACGTACTAGAGTTCG
AAAGGAATTTGAGAACTTGGCAGTACAGCCAAATGAGACACCCCATGAAT
TTCTGGCTAGATCTTTTGTCATTGTTCAGCGGATGAAGGAGATTGGTGTT
GACATGACAGAGACAAAAGTTCACCATCAGATCGTTCGTTCCCTGCCCCA
TCATTTCGCCATTGCGAAACACATGATGCTTATGAAAAAGAATTTGTCTA
CGAAAAAACTGGAAGAAGGGGTCCGAACTGCCAAAACTGAGGAAGAACTG
CGTGAGAATTTTTCTGAGCCATACATTAAAAACGCCCATCCGACCTTTCA
AGCACTGATCAAGTCAGTTGAGAAGTGTAAGCAACTGCAATGTGCATTGG
TGATCGATGGCTCGCCGTCTGGGGCATGGAGTATTTTTGAAGACTGGTTC
AGAGACACAACATCTGGAGAACGTACTAGAGTTCGAAAGGAATTTGAGAA
CTTGGCAGTACAGCCAAATGAGACACCCCATGAATTTCTGGCTAGATCTT
TTGTCATTGTTCAGCGGATGAAGGAGATTGGTGTTGACATGACAGAGACA
AAAGTTCACCATCAGATCGTTCGTTCCCTGCCCCATCATTTCGCCATTGC
GAAACACATGATGCTTATGAAAAAGAATTTGTCTACGAAAAAACTGGAAG
AAGGGGTCCGAACTGCCAAA
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