mRNA_H-paniculata_contig39960.10351.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39960.10351.1
Unique NamemRNA_H-paniculata_contig39960.10351.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: D8LF34_ECTSI (Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF34_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.540e-26
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   10 EADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFDAEKLSSLPGV 201
            EADAQVA+LVK G+ASAVITEDSDILVYMAAVK TAPVLYKMD FG CKEL FD EKLSSLPGV
Sbjct:  190 EADAQVAYLVKSGLASAVITEDSDILVYMAAVKSTAPVLYKMDEFGTCKELGFDPEKLSSLPGV 253          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A6H5KTE9_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.040e-25
Identity = 57/66 (86.36%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFDAEKLSSLPGV 201
            P EADAQVAFLVK  +ASAVITEDSDILVYMAAVK TAPVLYKMD FG CKEL FD EKLSSLPGV
Sbjct:  159 PYEADAQVAFLVKSDLASAVITEDSDILVYMAAVKSTAPVLYKMDEFGTCKELGFDPEKLSSLPGV 224          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A1V9ZKG0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKG0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.010e-11
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFD 171
            P EADAQ+ +L K   ASA+ITEDSDILVY AA    APVL+K+D  G CK LS D
Sbjct:  158 PFEADAQMVYLCKTKKASAIITEDSDILVYCAAANVAAPVLFKLDDTGACKVLSKD 213          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A067CY65_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CY65_SAPPC)

HSP 1 Score: 63.5 bits (153), Expect = 3.860e-10
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFDA 174
            P EADAQ+ FL K  + +A+ITEDSDILVY AA   + PVL+K++  G+CK LS DA
Sbjct:  158 PFEADAQMVFLCKQQVTTAIITEDSDILVYCAAANISVPVLFKLEETGDCKMLSKDA 214          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: T0Q3M9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3M9_SAPDV)

HSP 1 Score: 63.5 bits (153), Expect = 3.860e-10
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFDA 174
            P EADAQ+ FL K  + +A+ITEDSDILVY AA   + PVL+K++  G+CK LS DA
Sbjct:  158 PFEADAQMVFLCKHQVTTAIITEDSDILVYCAAANISVPVLFKLEETGDCKMLSKDA 214          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A1V9YU47_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YU47_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.830e-9
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFD 171
            P EADAQ+ +L K   A+A+ITEDSDILVY AA    APVL+K+D  G  K LS D
Sbjct:  158 PFEADAQMVYLCKINKAAAIITEDSDILVYCAAANVNAPVLFKLDESGLAKMLSID 213          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A6G0XUA1_9STRA (XPGI domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUA1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.620e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELS 165
            P EADAQ+ +L K   ASA+ITEDSDILVY      ++P+L +MD  G CK +S
Sbjct:   55 PFEADAQMVYLCKINAASAIITEDSDILVYSMTANISSPILLRMDTTGACKMVS 108          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A7R9ZBL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.960e-7
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMD-GFGECKELSFD 171
            P EADAQ+A L + G+  AV+TEDSD+LVY AA+    P++YK+D   G+C  L+ D
Sbjct:  217 PYEADAQLAALCRDGVVDAVVTEDSDVLVYSAAIGVPFPIIYKLDRDSGDCDVLTMD 273          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A0E9NFK8_SAICN (Exonuclease 1 n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NFK8_SAICN)

HSP 1 Score: 54.7 bits (130), Expect = 5.120e-7
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELSFDAEKLSSLPGV 201
            P EADAQ+A+L K G+ SA+ITEDSD+LV+    KC   VL KMD +GEC E+    E+ S++  V
Sbjct:  148 PYEADAQLAYLEKIGLISAIITEDSDLLVF--GCKC---VLLKMDQYGECIEIR--RERFSAVTEV 206          
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Match: A0A2D4CBL0_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBL0_PYTIN)

HSP 1 Score: 53.9 bits (128), Expect = 9.390e-7
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 PAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGECKELS 165
            P EADAQ+ ++ + G+ASA++TEDSD+LVY  A     PVL+K+D  G    LS
Sbjct:  160 PFEADAQMVWMCREGLASAIVTEDSDVLVYCVAASVDCPVLFKLDDGGMVHALS 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39960.10351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF34_ECTSI2.540e-2687.50Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KTE9_9PHAE1.040e-2586.36Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A1V9ZKG0_9STRA8.010e-1162.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CY65_SAPPC3.860e-1057.89Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0Q3M9_SAPDV3.860e-1057.89Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9YU47_9STRA1.830e-958.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0XUA1_9STRA5.620e-853.70XPGI domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A7R9ZBL9_9STRA1.960e-750.88Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A0E9NFK8_SAICN5.120e-751.52Exonuclease 1 n=1 Tax=Saitoella complicata (strain... [more]
A0A2D4CBL0_PYTIN9.390e-750.00Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39960contigH-paniculata_contig39960:1421..1624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D8LF34
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
Ec32 ortholog descriptionXPG-I domain
Ec32 orthologEc-06_001490.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.399998-CDS-H-paniculata_contig39960:1420..16241622930222.399998-CDS-H-paniculata_contig39960:1420..1624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39960 1421..1624 +
1691481197.5745838-CDS-H-paniculata_contig39960:1420..16241691481197.5745838-CDS-H-paniculata_contig39960:1420..1624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39960 1421..1624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39960.10351.1prot_H-paniculata_contig39960.10351.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39960 1421..1624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39960.10351.1

>prot_H-paniculata_contig39960.10351.1 ID=prot_H-paniculata_contig39960.10351.1|Name=mRNA_H-paniculata_contig39960.10351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MPAEADAQVAFLVKCGMASAVITEDSDILVYMAAVKCTAPVLYKMDGFGE
CKELSFDAEKLSSLPGV*
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mRNA from alignment at H-paniculata_contig39960:1421..1624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39960.10351.1 ID=mRNA_H-paniculata_contig39960.10351.1|Name=mRNA_H-paniculata_contig39960.10351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig39960:1421..1624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCAGAGGCGGATGCCCAGGTAGCCTTTCTGGTCAAGTGCGGCAT GGCCAGCGCTGTGATCACTGAAGATTCGGATATCCTGGTTTACATGGCTG CCGTCAAATGCACGGCCCCCGTGCTGTATAAAATGGATGGCTTCGGGGAA TGCAAGGAGCTGTCCTTCGATGCGGAGAAACTGTCGAGCCTTCCAGGTGT GTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39960:1421..1624+

>mRNA_H-paniculata_contig39960.10351.1 ID=mRNA_H-paniculata_contig39960.10351.1|Name=mRNA_H-paniculata_contig39960.10351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig39960:1421..1624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCAGAGGCGGATGCCCAGGTAGCCTTTCTGGTCAAGTGCGGCAT
GGCCAGCGCTGTGATCACTGAAGATTCGGATATCCTGGTTTACATGGCTG
CCGTCAAATGCACGGCCCCCGTGCTGTATAAAATGGATGGCTTCGGGGAA
TGCAAGGAGCTGTCCTTCGATGCGGAGAAACTGTCGAGCCTTCCAGGTGT
GTGAATGCCTGCAGAGGCGGATGCCCAGGTAGCCTTTCTGGTCAAGTGCG
GCATGGCCAGCGCTGTGATCACTGAAGATTCGGATATCCTGGTTTACATG
GCTGCCGTCAAATGCACGGCCCCCGTGCTGTATAAAATGGATGGCTTCGG
GGAATGCAAGGAGCTGTCCTTCGATGCGGAGAAACTGTCGAGCCTTCCAG
GTGTGTGA
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