mRNA_H-paniculata_contig3995.10349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3995.10349.1
Unique NamemRNA_H-paniculata_contig3995.10349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3995.10349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3995contigH-paniculata_contig3995:5978..12198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size427
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3995.10349.1prot_H-paniculata_contig3995.10349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3995 5978..7423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.23169-CDS-H-paniculata_contig3995:5977..61021622930222.23169-CDS-H-paniculata_contig3995:5977..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 5978..6102 -
1691481197.513856-CDS-H-paniculata_contig3995:5977..61021691481197.513856-CDS-H-paniculata_contig3995:5977..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 5978..6102 -
1622930222.249397-CDS-H-paniculata_contig3995:6292..64181622930222.249397-CDS-H-paniculata_contig3995:6292..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 6293..6418 -
1691481197.5241158-CDS-H-paniculata_contig3995:6292..64181691481197.5241158-CDS-H-paniculata_contig3995:6292..6418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 6293..6418 -
1622930222.2669432-CDS-H-paniculata_contig3995:7350..74231622930222.2669432-CDS-H-paniculata_contig3995:7350..7423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 7351..7423 -
1691481197.5327764-CDS-H-paniculata_contig3995:7350..74231691481197.5327764-CDS-H-paniculata_contig3995:7350..7423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3995 7351..7423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.2850785-UTR-H-paniculata_contig3995:12096..121981622930222.2850785-UTR-H-paniculata_contig3995:12096..12198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3995 12097..12198 -
1691481197.541173-UTR-H-paniculata_contig3995:12096..121981691481197.541173-UTR-H-paniculata_contig3995:12096..12198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3995 12097..12198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3995.10349.1

>prot_H-paniculata_contig3995.10349.1 ID=prot_H-paniculata_contig3995.10349.1|Name=mRNA_H-paniculata_contig3995.10349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MRGLVTATGILLAALPSTHGTWGSNNQCVSWGGSCDSGYHRRLTWFYGSG
GRSCCDGMACNNGYCGDQCASRGEYCGGTSHHRRLTYWYGSDDQSCCDGM
ACVDGYCG
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mRNA from alignment at H-paniculata_contig3995:5978..12198-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3995.10349.1 ID=mRNA_H-paniculata_contig3995.10349.1|Name=mRNA_H-paniculata_contig3995.10349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6221bp|location=Sequence derived from alignment at H-paniculata_contig3995:5978..12198- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCTGTCAACCTCCATCCAGGCTAACATATTGCCTCTCGGTCTGTCCA
GAAAAGAAGACGCCAACATAAACACATTTGGGTTCGCCCACGACTGTTCG
AGGTGAGACTGCCGACTGTCGAGAGGTTTGCTGCACTTGAGAATGTTCTG
TGTGTGTTGCAAAAAATTTGGTGGAGCTTTGTTGTCCCTCAATTCAAACC
CTATTTCTTGATATGCTATATGAATGAAGCAACCACCCCCCAATACTGCC
ACTCATGTCTGGACAAGGGCTCGCCAAGTGAGGTGCAGAACATTCCCTAA
ACAAGAGAGAGAGGGTCATATTTCGTATGATGTTATTCACGTTTGAGAGG
GGTGCACTAGCAAAGTTGGACTTGTGCTGAAGATCATCGTTACCTATCTT
TGGCACGACTCTGACTGATTGTAATTTTGCACAGCTCGGACGAAGGTCCT
TCATTCGTCGATGAAGGGTGTCGCGGGTTTTGGAACTATACCAGCACGAG
GATACCTGGCGTCTTCCGAAACCCATAAATCTATAGGATGGATATCCTGC
ACACCGTCGTGGATTGTTTGACTTTTGAATATTAGCACAATTCCACAGAT
ATTTCTACTTTCTAGCATGAAGGGATGACGGTTCCGTTGCGTGTTGACTA
CTCAAAAATCAAACCTTCGTCCGAGCTGTGTATTTTTGTTACATGAGAGG
GAGGTGTTTCATACATGGACTGTACCAGCAGATTGTATCACGAGCTGAAA
TCCCAAAAGCACGAGCGCCGGGGTGCACGCATTCGGTGTACGCTCTTACT
CCAATTCGCTTTCTTGATTGCCCTCTGCCTACACCTGCATACACAGCAAC
ATGGTGAAATGTAGCAACAGTCTGCACAATACTGTACTGGACTGATTCTG
ATGAAATTGACTGCTTCGGATGTATAGGACTCTTCGTGCACCCTCCGGAA
GCATGTAGTATTCATGATTTCAGCAGCATACCCTCTTGAGGGTGCAAAGA
TCCGTCTCCGTTTGGTCTGTTGTGCACCTTCTAGAGGTAGTTTCTTATTG
TTTCAGATGGTCTGCACTACGCAAGGAGGGTGAAAATGCATGTCACCTCG
ACTTACAGGAGGGCCCACGATGGATTGAGGTGGAATTTATGTGGAATTCC
CACACCAGATCTTTCGCGGGCCTCTTGTTCAATTTGTGTATAATCAGGTG
TGTCGGAGACATTTCGAGAGAGGTGACTTATCCCAAGCTCCTCCTGTAAG
CTATATAGGTAACAATCAGCTAAGGTATTCTGTATCTCCTTCCATATAGC
TCAAGTATTGCTGGGAGAGTGCACGACATGTTTGGGATGTATTCCGTACC
TGGGTGGATTGACTGCAACGCAGAAAACGAGTAGTATTTTGCTTGCTGCG
TTCCATGAAATAACACATTGGGAAGAATCTGCCTGTTTCCGGTTGGTTCA
ACATTGCAAATCATTTCATTCAGCGCGGTGCCTCGCGCATATCATCCCAC
ACGCATTGTTGAGTTGTTATTTGTTGGGTAGAGTGGCACACAGTGCACTT
TCTCCTTACATAAACGAAACAACGCTTTCTTCTGCAATTTGTTATCTACA
TCTCTGCATTTTCATTAATCATCAACGAACGGGTGCTGGTACGACCTTTC
TTTGTAATTCGATTTCTTTGCCGATTTCTAGAATAAAGGGTTTCGGCCAC
TGACCTCTCCATCTCTAGCATCACTACTACACCACCGCACCACCGCTACA
TATAGTATCCCACCAACCTAAACAGCTCCCCGTAAGCTTCTTTTATAGTT
TTGCGACCTCTTGGACGTCTTCGCGATCGCTATTTGGATTGACGTCTTGT
CGTGGCATGATGATATGCTCGAGTAAAAACTATCCAATAAAATAGAGATG
AAGTGCTTTCAGGCTCAATCATACATATTCGAATACGGGATGGCTGAAAC
GAGTTTAGCGGTAAAGAGGAAGTGTTCTGAAAAATATTCTGTAGGACACC
ACGCCTGCTCGCAGACTTTCGCAGACAACAAAGCCCAGCGCCGAGCACAC
CGACGTTCACAACTCATAATAATCTAGGAGTAAATTGGACCGTTAAATTG
GATCAAACAAACACTGACTGTTCTATGGATCACCGGCTTCAATATCGAAG
ATTGACAACCGTACGAGACACGGAATATGCCATTAGCCGATGGATGATTT
GCGTTGCTGTTGGCAGCAATTATTTATCTTGATTTCAATGTACGAGATAT
CACATATCTCAGTCCGAAAATAGGGCATAACGCGGTATCACATATCTCAG
TCCGAAATAGGGCATAACGCGGTCATGCGTGTACGCATTAGCGTTATTCA
CAATCGATGTCCTCGCTTGGTCTGAGTCGTTCCTGTTGCCTAATAACTAA
ACAAAAACGCTTCGAAACGTAGCGCGGGTGGTGTCATTTCCAGGCCAGGC
CAGGCCGAAAGATGAAGCACCGAGACCGAAAGGCACAGGATTTCTGTTGT
TTGTTGTGTGACCGATCTCAGGAAGGAATGTTGGACCGCCGCATGAATGA
TATGAGACTCGCACACGGTAGTCTCCTATGACAGCGAAAAGAAAGCGCAT
CATGTTGTTCCTTTTTTACATTCTCACGTATTTCTCACGTGTTTAGTAGA
GCTTCGAAATCAGTCAGTTATTGCCCCGCTCAGCTTGCGAACATCCGTGT
ATTGCAGAGGTCAGACCTGTTCCGTTTGGAGGCCCTTTTTTGGACACTCT
TGACTGGACGATAGCAAGTTGTCTTACCGGTTTTACTGGCGGGGCTTACT
GGTTACTGGTGTTACTGATGGAGCTTACTGGTGTTACTGATGGAGCGTAC
TGGTTACTGGTTTTACTGGCGGAGTATGCGACCTGTCGCTGGTGTTCCAT
AGCAATCGCTAGAACTATCAAGACACTCAGTAATCGCAACAAGTTCAATG
GCTTAGATGCTGGCCGTACATTGGCTAATGATATAAAAGGGATACTATAT
CATACCTCCCATAGGTGCTTTCATGCCAGAAAGGCAAAATACATACAGAG
AAACAGACAATTGTGCTGCAGGCACTTTCTCACTGAACTACATACATTGC
TCACGGTTGGCAGTCAGCAGTGCAGACAGTACAGGCAGACGGAAGAGTCC
TCGCCCACTAAATCAAGAAAATGGTCCCTGCTTCATGTTGCAAATAACCC
GACGCTAGTCCAAGTTTACACGGAGAAGGTGTGTGAGTCGCTATTTTCGC
AAAATAATCCAATACTGCACGACACACGCTCTGGTCGTAAGAATCGATTT
TGTGTTCATTACTGGGGTCTAATGGAATTTTCAGAATAATAAGCATTGTG
GCAGTCTTGCCACAACGCTCTCGCCTTGTTTGACGAAGGAGCCACCTCGA
GAAGGGGATCGGATGTTTGTGTCTTTTTCTTCATTTGTTGCCAGCCCTTG
AATAGAAATCCATTTCAACTCGTGGACTGTGCACTTGCCTTTCAGGATGC
ACAAACACATGCAATTGACATGGTTTTGATTCGCGTTATTTTTGGACGGC
TTTTTCCGAAGCGACCTTCGTTAAACGATTGACGCCTCCCAGCGTAGGAT
GACTCAGAAGACTTTGATTTGGAGTAAATATCTGCAGCTGAAGCGATCGT
TTCGCCTGTTTTCGACTTGAAATATATTGCACAATCTATTGAGAAAAGAC
GAAAATTATTTCTCTCTCGTCTTCGCTCTTGTTTGGTTGTACTCGTCCAT
GCGCTTTCACGGTTGACCAGGCGTCCTTCTCGGCAGCATGCAGAACGACT
CGCTCGCATTATATTAGGTTTCCGCTAGTGTTTTTTGGTTGACTACTGCC
ATGTGTGCACCGCAGATAAAAGAAAAACTCACTGTTTGGGTCCGCTTTTT
GCGTCTCGCTAACAGGTACTACCATTGTAGGGCAAAGCCGAAACCAACTC
CCCCCTGTTAGAAATTCGGTCATTTTTACTCGTTCTTCCAGCAAGATTGT
TCTATCCTTTCTTCTCGACATGAACCGCGACGATCGCGTATTGTTTTGTC
ACATATCTTCCAGGGTACCCATCAGCCTCCCCGGAATGAATATTGGAAAC
ACACTTCATTCTGCACCATTCGTTCACATTATGTGCCTCTTCAACCGATA
TGCTAGAGCAAACGAAATGATTTCACCCCCAGACAAATAGGAATACTTGC
AAATGGTTTTCACAAAAAACTGAAAGTATTCGATTGAGTTTCAAAAATAG
CGGACTTATGGAATAAAGTGCCCACCCCTGTACATTCGATTTGCGAGTAT
TATTAGTAGTCGTGGATGGTCCGGGGCACATAGAATACACGATGTCATTC
TGAAACTGAGGCGAATATGTTCAGTTTTTTGTAATCATCATTAGCGTGTT
TTCGTATTTGTCCAGGGGGTGAATCATTCGTCGTGACTGTTTTTGGGGTC
CTCAACATGACAACTCCCGGTGTCGTACACTTGAGGAAGTCGCTGGAATG
TCCTGGAGCTAGCTCCAGTATTAAACAATGGATTGGAGAAGACCAGGCGG
TGACTGGGTATGAAATCCACTCCTGGCAGCAAGTCTTCCTTTTATTTAAG
CTATGAATTCAATCGCTGATACTTTCATTCAAAAGAGGCTTTGCGTAATC
GCCACCATCCCCTCCGATCATATCCTTGTACGTGCGCCCGGTTCTCCCCT
CCCACCCAACCTGCCGAACCCACGACTTCCCTTGGTTGTTGGTTCGCATA
TTTACGGTGCGCGTCCTTTTGTCAGATGAGGGGGCTCGTCACTGCCACCG
GCATCCTACTGGCTGCCCTGCCGAGCACTCACGGCACATGGGGATCGAGT
GAGTTTCTATATTTTTTCAAGTGGCACTTTCGTGTGTCGTTTTTGCAGCA
AAAGCGGTAAAAGCGGGCGTTACGTGCACAAGCGAAAGCTCTGGTGCTGC
TATCAACGCGGGAAGATCTGTCTTGCCTTTTCCCGGTTTTCGAGAGAGGG
CTGTAGAAAAGCAAGCGTTCGGTGTCAAATGGCGAGCTAAGTGTTTACTT
TTGTCCACCCACTTATTCATCGTCTTGCCGTTTATCTTGACTGTTCAGGA
GCTAGTATTGCTTAAATGAACAAGTGGAGGAATTTGAAATATAAACATAT
TTTTGTGTGCGTTTTCGTGTGTTTCCCTCGATAAAGACATAACATGTAAG
GAGAACTTCAAAATCAAAACACCTCTTTATTTAGGGCCGAGTATTTAGAT
GCTGCTGTCGTGTGCTCGACTGATGGCGTTTAAATTGCATTATATTCAGT
CAGTAAAGAACAAATGCTGAGGTTGGTTGGGAGGAAACACAGAAATCGAA
TGACCGATTAGCACCGTCGACAAATTTCCGAAAGGTCGAAGCCAAATAAG
TATCAATTAGAACGGCCCCGGATGCTGGGGTGAAAGTTCATTTTGTGCCC
CTAGGACTCATTTCTTGTTTTCAGCAAATTTTTACGTTCTGTGTTACATA
GATGTTGTGTGGTTCCGCCAAAATGAAGGAATGTGTGCTCACCATTGTTT
TGCCGGCTCCATCCCGTACGCTTGTCGACGTTTAACTTGCTACTGTAGTA
TCGGCATGTTCTTCGAGATGTTTGGGTGGGATTGTTGTCGTTGAACTTGC
TAGGATTTAGGAACAACGTTCTTTTTTGCACCGTCTTCTTTCTTCGGCGA
TCTGAAAAGGGGAGTGGCCGTTGCGCAAGAACCAAACAGAGTGCTTTCTT
TCGTTTGTCATGCTCGTGTGTGATCCATAGACAATCAATGTGTATCATGG
GGTGGATCTTGCGACTCCGGCTACCACAGACGACTAACGTGGTTTTACGG
ATCTGGCGGGCGGTCCTGCTGCGACGGCATGGCGTGTAATAATGGCTACT
GCGGAGGTGCGATGAGTAATGAGGGTACAGGTCGCGCATCGTACACCTGT
TTGTGGCTGTTAGTATCAATATGTAGATAGATAGATAGATAGATAGATAT
ATGCGATCTGATGCTACGCCAACGGTACGACCTTCGTTGTGCAAAAACCA
AACATGGTGCTTGCTATCGTTTGTCGATTGTATTCGTTTTTCATAGACCA
ATGTGCATCGCGCGGGGAGTACTGCGGCGGCACCAGTCACCACAGGCGGC
TGACATATTGGTACGGATCCGACGATCAGTCTTGCTGCGACGGCATGGCG
TGTGTCGACGGCTACTGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3995:5978..12198-

>mRNA_H-paniculata_contig3995.10349.1 ID=mRNA_H-paniculata_contig3995.10349.1|Name=mRNA_H-paniculata_contig3995.10349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig3995:5978..12198- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGGCTCGTCACTGCCACCGGCATCCTACTGGCTGCCCTGCCGAG
CACTCACGGCACATGGGGATCGAATGAGGGGGCTCGTCACTGCCACCGGC
ATCCTACTGGCTGCCCTGCCGAGCACTCACGGCACATGGGGATCGAACAA
TCAATGTGTATCATGGGGTGGATCTTGCGACTCCGGCTACCACAGACGAC
TAACGTGGTTTTACGGATCTGGCGGGCGGTCCTGCTGCGACGGCATGGCG
TGTAATAATGGCTACTGCGGAGACAATCAATGTGTATCATGGGGTGGATC
TTGCGACTCCGGCTACCACAGACGACTAACGTGGTTTTACGGATCTGGCG
GGCGGTCCTGCTGCGACGGCATGGCGTGTAATAATGGCTACTGCGGAGAC
CAATGTGCATCGCGCGGGGAGTACTGCGGCGGCACCAGTCACCACAGGCG
GCTGACATATTGGTACGGATCCGACGATCAGTCTTGCTGCGACGGCATGG
CGTGTGTCGACGGCTACTGCGGAACCAATGTGCATCGCGCGGGGAGTACT
GCGGCGGCACCAGTCACCACAGGCGGCTGACATATTGGTACGGATCCGAC
GATCAGTCTTGCTGCGACGGCATGGCGTGTGTCGACGGCTACTGCGGA
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