mRNA_H-paniculata_contig3994.10347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3994.10347.1
Unique NamemRNA_H-paniculata_contig3994.10347.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3994.10347.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.100e-21
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 3 
Query:  228 REELAHQQGALSEASQSRSILLIYFDLV*SGMDLNAVVTETGRVMRVGVKKVYQVCTCWEDQKLLMTTSGEGRGVAKGHDVRAALSKPQVVDLRAFISAKHEEGKQV 548
            R++LA + G+L + SQSRSILL YF+LV SG++ N  V  T   +RVG  KV++V   W ++  L+T+S EGRGV+ G D R  L   Q  +LRAFIS KHE G+QV
Sbjct:   88 RDDLAPRTGSLLDTSQSRSILLTYFELVQSGVEPNKAVQRTASTLRVGKDKVFKVRAHWWEKTELLTSSAEGRGVSSGKDGRKLLDDVQCANLRAFISDKHENGQQV 194
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BLAST of mRNA_H-paniculata_contig3994.10347.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.380e-20
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 3 
Query:  228 REELAHQQGALSEASQSRSILLIYFDLV*SGMDLNAVVTETGRVMRVGVKKVYQVCTCWEDQKLLMTTSGEGRGVAKGHDVRAALSKPQVVDLRAFISAKHEEGKQV 548
            R++LA + G+L + SQSRSILL YF+LV SG++ N  V  T   +RVG  KV++V   W ++  L+ +S EGRGV+ G D R  L   Q   LRAFIS KHE G+QV
Sbjct:   88 RDDLAPKTGSLLDISQSRSILLTYFELVQSGVEPNKAVQRTAATLRVGKDKVFKVRAHWWEKTELLASSAEGRGVSSGKDGRKLLDDVQCASLRAFISDKHENGQQV 194
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BLAST of mRNA_H-paniculata_contig3994.10347.1 vs. uniprot
Match: D7FWI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.560e-14
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 3 
Query:  183 RTAAQQRQQDIAEAAREELAHQQGALSEASQSRSILLIYFDLV*SGMDLNAVVTETGRVMRVGVKKVYQVCTCWEDQKLLMTTSGEGRGVAK 458
            RT  Q+ +++ A   R+ LAH+ G+L + SQSRSILL YF+LV +G++ N  +  T   +RVG  KV++V T W ++  L+T+SG GRGV+K
Sbjct:   73 RTPQQEAREEDAAKQRDVLAHRTGSLLDKSQSRSILLTYFELVQAGVEPNKAILRTASTLRVGKDKVFKVRTHWWEKSELLTSSGAGRGVSK 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3994.10347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ25_ECTSI6.100e-2150.47Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KZM0_9PHAE2.380e-2049.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI1_ECTSI2.560e-1445.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3994contigH-paniculata_contig3994:14932..16271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size605
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3994.10347.1prot_H-paniculata_contig3994.10347.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3994 15252..16217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.0386717-UTR-H-paniculata_contig3994:14931..152511622930222.0386717-UTR-H-paniculata_contig3994:14931..15251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3994 14932..15251 +
1691481197.4237316-UTR-H-paniculata_contig3994:14931..152511691481197.4237316-UTR-H-paniculata_contig3994:14931..15251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3994 14932..15251 +
1622930222.0925307-UTR-H-paniculata_contig3994:16217..162711622930222.0925307-UTR-H-paniculata_contig3994:16217..16271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3994 16218..16271 +
1691481197.4558907-UTR-H-paniculata_contig3994:16217..162711691481197.4558907-UTR-H-paniculata_contig3994:16217..16271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3994 16218..16271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930222.0575545-CDS-H-paniculata_contig3994:15251..153201622930222.0575545-CDS-H-paniculata_contig3994:15251..15320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3994 15252..15320 +
1691481197.4321237-CDS-H-paniculata_contig3994:15251..153201691481197.4321237-CDS-H-paniculata_contig3994:15251..15320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3994 15252..15320 +
1622930222.077032-CDS-H-paniculata_contig3994:16055..162171622930222.077032-CDS-H-paniculata_contig3994:16055..16217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3994 16056..16217 +
1691481197.4431016-CDS-H-paniculata_contig3994:16055..162171691481197.4431016-CDS-H-paniculata_contig3994:16055..16217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3994 16056..16217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3994.10347.1

>prot_H-paniculata_contig3994.10347.1 ID=prot_H-paniculata_contig3994.10347.1|Name=mRNA_H-paniculata_contig3994.10347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MDLNAVVTETGRVMRVGVKKVYQVCTCWEDQKLLMTTSGEGRGVAKGHDV
RAALSKPQVVDLRAFISAKHEEGKQV*
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mRNA from alignment at H-paniculata_contig3994:14932..16271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3994.10347.1 ID=mRNA_H-paniculata_contig3994.10347.1|Name=mRNA_H-paniculata_contig3994.10347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1340bp|location=Sequence derived from alignment at H-paniculata_contig3994:14932..16271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGGGACCTCCACCAGAAAAGGCTCCACTGTCGAGACTATGTAGAGCT
TGACAAAGACCAAGTAATACATGCCAGAAACATGACATAGTGCGGCGATA
CGTTAGCTGAGCACGAGGCAGCCATCGAGCGGCGAGAGAAGGCTCAGATG
GAATGGGACAAACAGCGGAGATCGACAAGATCCGCACGGCTGCGCAGCAG
CGCCAGCAGGACATTGCTGAGGCGGCACGCGAGGAGTTGGCTCACCAGCA
AGGAGCACTATCGGAGGCGTCACAGTCTCGGTCTATCCTGCTGATTTACT
TCGATCTCGTCTAGTCAGGCATGGACCTAAACGCAGTTGTCACGGAGACC
GGAAGAGTAATGCGGGTCGGCGTGAAGAAGGTGTATCAGGTATGCATCTT
TGTACTGTAGAGACACTACAGTAGTACAGTATAGTCTGTTCTTTGAATAC
ACCCTTCTTTCGGAACGGGCTTTCTTTCCACCCCAGAGTGTGCACCCTCT
GTATGCACCACTCGGAAGCGTTGTGAGGGGAGGAGTTCGGAACGGGCTTT
ACATACTTTATCCTACTGTACTGTACTGTACTGTACTGTACTGTACTGTA
CTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTA
CTGTGCTGTGCTGTACAAGCAGTACAATACCGCCTCTACTTGCGTATGTT
ATAAATCCCTACGTTTACTGTCTGTAGCCTGCTTGGCTGACAATTTTGAT
ACGATTAATAAGGCGTCCACGGTATGCTGTCTGCACCTTTGCCTTCTGAA
CCGTTTCACCACGTCATGCTAAGTGCTGGGTCACTTGTACCCTCTGTAGG
CTGAGAGTACTGGCTGTTGGTGCTGACATTATCACGAAATGCCGACCCGT
TTGTATCCTTGAGTGTGCGCGCCCGCTGCATCTGGATTGTGCTGAAGTCT
TCGTACCCTTTTCGAGTGAGAGTGCTCATTCTATGTATTGCCCGTTTCTC
CAAAGTACTGACGCTTGTGTACAGCAAAGTGTGTGCAACCTCTTCTGAAA
TATTGCAATTGGCCGCGACGTCAACTTTGATTGTAACATTCACGACTGCA
TTTTTGTAACATTTTCGTGAACAGGTCTGCACTTGTTGGGAGGATCAGAA
GTTGCTCATGACAACATCAGGCGAAGGACGAGGTGTGGCGAAAGGACACG
ACGTACGGGCGGCCCTCTCTAAGCCACAAGTAGTCGACCTTCGCGCCTTC
ATCAGCGCTAAACATGAGGAGGGGAAACAAGTTTAAACATCTCTAAGTTA
TTGCATTGTTTTTTGTTAGAGACTGCGTTGGCCGTCCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3994:14932..16271+

>mRNA_H-paniculata_contig3994.10347.1 ID=mRNA_H-paniculata_contig3994.10347.1|Name=mRNA_H-paniculata_contig3994.10347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig3994:14932..16271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCTAAACGCAGTTGTCACGGAGACCGGAAGAGTAATGCGGGTCGG
CGTGAAGAAGGTGTATCAGATGGACCTAAACGCAGTTGTCACGGAGACCG
GAAGAGTAATGCGGGTCGGCGTGAAGAAGGTGTATCAGGTCTGCACTTGT
TGGGAGGATCAGAAGTTGCTCATGACAACATCAGGCGAAGGACGAGGTGT
GGCGAAAGGACACGACGTACGGGCGGCCCTCTCTAAGCCACAAGTAGTCG
ACCTTCGCGCCTTCATCAGCGCTAAACATGAGGAGGGGAAACAAGTTTAA
GTCTGCACTTGTTGGGAGGATCAGAAGTTGCTCATGACAACATCAGGCGA
AGGACGAGGTGTGGCGAAAGGACACGACGTACGGGCGGCCCTCTCTAAGC
CACAAGTAGTCGACCTTCGCGCCTTCATCAGCGCTAAACATGAGGAGGGG
AAACAAGTTTAA
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