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Homology
BLAST of mRNA_H-paniculata_contig3982.10323.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.220e-36 Identity = 96/171 (56.14%), Postives = 112/171 (65.50%), Query Frame = 2
Query: 62 MREKLARLLDGLTGKVRLSRDDPRLDSLLGCGSRVLGLSLSDPKMLDFCDNMVLNNAKTGNFGTLLALTSAAVDEAISNADAFSNSAVDYNNRVSGGSGRIGRSASGTAAAAADAGLKTFTPALDAAEGLFPRALAALRLTRLFAARMVATLDAAQLRAQVYARGKNTLGD 574
MRE+LARLLDGLTG VRL DPR +SLLGCGSRVLGLSLS+ K++DFCD M+ NN TGNFG+L+ALT A DEA+S A A + A N T A AA + EG FPRALAALRLTRLFAAR+V+TL A+Q+RAQ Y+RG GD
Sbjct: 1 MREELARLLDGLTGTVRLGSTDPRWESLLGCGSRVLGLSLSEAKVVDFCDAMLRNNPSTGNFGSLVALTVATADEALSIASAVAEVANTTGNXX------XXXXXXXTVALAAR----------HSPEG-FPRALAALRLTRLFAARIVSTLGASQVRAQFYSRGSRRDGD 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 754 |
| Cds size | 693 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3982.10323.1 >prot_H-paniculata_contig3982.10323.1 ID=prot_H-paniculata_contig3982.10323.1|Name=mRNA_H-paniculata_contig3982.10323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MREKLARLLDGLTGKVRLSRDDPRLDSLLGCGSRVLGLSLSDPKMLDFCD
NMVLNNAKTGNFGTLLALTSAAVDEAISNADAFSNSAVDYNNRVSGGSGR
IGRSASGTAAAAADAGLKTFTPALDAAEGLFPRALAALRLTRLFAARMVA
TLDAAQLRAQVYARGKNTLGDTELVGGNGRTGAAGPGGSHGGSHGGTSGR
AGHMTTALTEGQEEAQDGVLSHGNGGGGDSG back to topmRNA from alignment at H-paniculata_contig3982:5916..7799+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3982.10323.1 ID=mRNA_H-paniculata_contig3982.10323.1|Name=mRNA_H-paniculata_contig3982.10323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig3982:5916..7799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGAGGGCAGTTTGTAGTTTCGTGCACACCTTGATGGATCAAGACAC
AGACATCAACAATGCGAGAGAAACTGGCTAGGCTGCTTGACGGGCTGACA
GGGAAAGTTCGGCTTTCCCGTGATGATCCAAGGCAAGCGAATTTTTCGGT
CGTTCAATGAAATAACCTCCTCTCATCAAACAGAAGAATCTCTGTTGCTT
TTACCATTTGCAACACACTCAGTAGGACACAGGACAGCCCACCGCGAACC
CCACAGTATACAGTACGGTAGAGTACACTTCTACTGGGAAAGCCCCAACG
TGTGTCTGCCTCAAAAATTAACGCAACTGAGCACTCCGACTGGATATCGT
TGAACGCATGTCCTAATTGCACCCATCCATCTTTCTGTTTCGTTCCGTCA
CACTCGTCAGATTGGACTCTTTGCTTGGATGTGGGTCGCGGGTACTTGGA
TTGAGTCTCTCCGACCCCAAAATGCTAGATTTCTGCGACAATATGGTGCT
CAACAATGCGAAGACAGGGAACTTCGGGACACTGTTGGCTCTCACGTCGG
CTGCTGTCGACGAGGTTCGTGTTGTATGAGAAAAAAAAATCATGCTGTAC
GTGAGGGGACGAATCAATCATCCACCTCATCTACAATTCTCTGGCGTGAG
CTGAAAATCATGAAAAAAAAAATAGTCATGGCACGCTTATTTTTGTTGGA
CGTACGTGTCAATAGCAGGAGTATATATCGGCTGTACTGTTAATTCCGAA
GGTTTTCATCGACTTGTATCGTGTGTCTACATCTGGACAACGGCATTATC
ATACATGATCAAATCAAAAAGGCACGCATATGAAGCTGACAGTTGACGTG
AAAAAGACCCATTATTACCAAAATTCAGAACTACATCAGTGTTTTGATGC
CATTTCTACCGTTTATTTGAAACAGGCGGATGAATAATGGTAATATTCGG
AGATATCTAGCTGGCATTTTGTTTGTTTCATCAGACGTTAACGTGATGGC
GTTCATGTTATTTATTTGACTACCACATGGAAACTCGTGGTGAAAATTGT
ACTTCAGGCGTACACAAGAGTCCCCAACGAATGGAAAACCCAGCAGCGGC
TCCACCAAATGACGTGGCCCCATGCTGGCGTGTCTAGCTCGTGCGCTTCG
TCCTCGTGTTAGAGGAACTAGATATCAAAACTCACGGACACACCGATACA
GTGGGCAAACATTGTGGCGTCTCTCCCTCTCTCTTTGAGAGAAGATACTT
CGGACTGACTTGACTTATCTGTTGAACCCCAGCGCGGACCCAACCATAAA
TCAAATGTGCTAGTGGTCTCTTGACGGCATTACTCGCTCTTTCACAACCT
CGCCATCTATATTGCATTTCCTACTTTTCCTGCTTTTCTCTCGCGCTCGT
TTGTCGTCGAAGACAGGCCATTTCCAACGCCGACGCCTTCTCCAACTCAG
CCGTAGATTATAACAACAGAGTATCCGGAGGAAGCGGAAGGATAGGACGA
TCCGCAAGTGGTACCGCTGCTGCCGCCGCGGACGCGGGACTCAAGACATT
TACACCAGCGCTCGATGCGGCAGAGGGCTTGTTCCCTCGAGCTCTGGCGG
CGCTGCGCCTCACACGCCTCTTCGCGGCCCGCATGGTAGCCACGCTCGAT
GCGGCCCAGCTGCGCGCTCAAGTCTACGCCCGCGGTAAAAATACGCTCGG
GGATACGGAGTTGGTTGGTGGGAATGGCCGTACTGGTGCTGCCGGCCCCG
GCGGTAGCCATGGCGGCAGCCATGGTGGGACGAGTGGGCGAGCTGGTCAT
ATGACTACGGCCCTGACAGAGGGACAGGAAGAGGCGCAGGATGGAGTACT
GTCACATGGTAATGGCGGCGGTGGCGACAGCGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3982:5916..7799+ >mRNA_H-paniculata_contig3982.10323.1 ID=mRNA_H-paniculata_contig3982.10323.1|Name=mRNA_H-paniculata_contig3982.10323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig3982:5916..7799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGAGAAACTGGCTAGGCTGCTTGACGGGCTGACAGGGAAAGTTCG
GCTTTCCCGTGATGATCCAAGATGCGAGAGAAACTGGCTAGGCTGCTTGA
CGGGCTGACAGGGAAAGTTCGGCTTTCCCGTGATGATCCAAGATTGGACT
CTTTGCTTGGATGTGGGTCGCGGGTACTTGGATTGAGTCTCTCCGACCCC
AAAATGCTAGATTTCTGCGACAATATGGTGCTCAACAATGCGAAGACAGG
GAACTTCGGGACACTGTTGGCTCTCACGTCGGCTGCTGTCGACGAGATTG
GACTCTTTGCTTGGATGTGGGTCGCGGGTACTTGGATTGAGTCTCTCCGA
CCCCAAAATGCTAGATTTCTGCGACAATATGGTGCTCAACAATGCGAAGA
CAGGGAACTTCGGGACACTGTTGGCTCTCACGTCGGCTGCTGTCGACGAG
GCCATTTCCAACGCCGACGCCTTCTCCAACTCAGCCGTAGATTATAACAA
CAGAGTATCCGGAGGAAGCGGAAGGATAGGACGATCCGCAAGTGGTACCG
CTGCTGCCGCCGCGGACGCGGGACTCAAGACATTTACACCAGCGCTCGAT
GCGGCAGAGGGCTTGTTCCCTCGAGCTCTGGCGGCGCTGCGCCTCACACG
CCTCTTCGCGGCCCGCATGGTAGCCACGCTCGATGCGGCCCAGCTGCGCG
CTCAAGTCTACGCCCGCGGTAAAAATACGCTCGGGGATACGGAGTTGGTT
GGTGGGAATGGCCGTACTGGTGCTGCCGGCCCCGGCGGTAGCCATGGCGG
CAGCCATGGTGGGACGAGTGGGCGAGCTGGTCATATGACTACGGCCCTGA
CAGAGGGACAGGAAGAGGCGCAGGATGGAGTACTGTCACATGGTAATGGC
GGCGGTGGCGACAGCGGGGCCATTTCCAACGCCGACGCCTTCTCCAACTC
AGCCGTAGATTATAACAACAGAGTATCCGGAGGAAGCGGAAGGATAGGAC
GATCCGCAAGTGGTACCGCTGCTGCCGCCGCGGACGCGGGACTCAAGACA
TTTACACCAGCGCTCGATGCGGCAGAGGGCTTGTTCCCTCGAGCTCTGGC
GGCGCTGCGCCTCACACGCCTCTTCGCGGCCCGCATGGTAGCCACGCTCG
ATGCGGCCCAGCTGCGCGCTCAAGTCTACGCCCGCGGTAAAAATACGCTC
GGGGATACGGAGTTGGTTGGTGGGAATGGCCGTACTGGTGCTGCCGGCCC
CGGCGGTAGCCATGGCGGCAGCCATGGTGGGACGAGTGGGCGAGCTGGTC
ATATGACTACGGCCCTGACAGAGGGACAGGAAGAGGCGCAGGATGGAGTA
CTGTCACATGGTAATGGCGGCGGTGGCGACAGCGGG back to top
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