mRNA_H-paniculata_contig39707.10302.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39707.10302.1
Unique NamemRNA_H-paniculata_contig39707.10302.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A2N9EI16_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EI16_FAGSY)

HSP 1 Score: 230 bits (586), Expect = 5.020e-64
Identity = 146/400 (36.50%), Postives = 211/400 (52.75%), Query Frame = 1
Query:   43 ALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFP-----------------LSPE-------------------------IRH-----LCAACVKASVLSDIGTGVQESSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTK 1101
            ++  N TWE  DL   P GR+    KWI+K K  EDGS+ +HKARLVA+G++Q    DF ET APV  M T+R+V +LAA+   ++  +DV +A+LN  +EEE++V+ P  +                  L+P                          ++H        AC   S        +Q++     ++   YRSL GSL+Y  T TR DI ++V  ++R M  P +  ++  K I RYL     LGI +  K N + L GF D+D    ++DRKST+GY+F L    I+  S+KQ+ V  SS EAEY+AA +A    V+LR++L  +       T +  DN SAI ++K    H RTKHI +R H IR+ + +G + LK + T+DQ ADILTK
Sbjct:  592 SIERNQTWELVDL---PNGREVIGLKWIYKTKFNEDGSIQKHKARLVAKGYAQQPGVDFHETFAPVVRMETIRTVLALAAQMELQVFQLDVKSAFLNGDLEEEVYVEQPKGYVKKGKEDRVYRLRKALYGLAPRAWNSKIDSYFRQNGFHRSKCEPSLYVKHDGTGRFSGACKPVSTPMSSNEKLQQNDAAEKADAKAYRSLVGSLIYL-TNTRPDIVHSVSLISRFMNQPSKLHYATAKRILRYLQGTKKLGILYK-KENDNNLVGFTDSDWVGSLDDRKSTSGYIFCLGSKVIAWSSKKQKTVALSSAEAEYIAANDAACEAVWLRKILSDLQQKIEEPTVICCDNMSAIAMTKNPVFHARTKHIELRHHFIRDLVSQGEIQLKFISTNDQPADILTK 986          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A2Z6N7S3_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N7S3_TRISU)

HSP 1 Score: 228 bits (581), Expect = 5.220e-63
Identity = 139/378 (36.77%), Postives = 213/378 (56.35%), Query Frame = 1
Query:   43 ALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPE------------IRHLCAACVKASVLSDIGTGVQESSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQFLRLRNL 1140
            A+  N TWE   L  LP+G K    KWI+K K  E G + +HKARLVA+G++Q    D+ E  APVA   T+R++ +LAAER + +  +DV +A+L+  +EEE++V+ P  +    +            ++    ACV   ++   G  +++   G+    + Y+ + GSLMY    TR D+ ++V  VAR ME P     +  K I RYL      G+ +  K  G  L G+ D+D A D++D+KST+GYVF +   A+S  SRKQ +VT S+T+AE++AA       ++L  ++  I    +   T+F DN S+I +SK    H R+KHI VR+H +R+  ++G + L H  + +Q ADI+TK LS   F R+R L
Sbjct:  792 AIESNDTWE---LAELPSGAKKIGVKWIYKTKYNEQGKIEKHKARLVAKGYAQQHGIDYNEIFAPVARWDTIRTILALAAERGWYVFQLDVKSAFLHGDLEEEVYVEQPLGYQKENKNLVYRLKKSLYGLKQAPRACVCNPMVP--GNKLKKDEAGKMCYSTNYKQMVGSLMYLLA-TRPDMTFSVCLVARFMERPTEIHVAAVKRILRYLKGTLSYGLWYE-KGRGEELIGWSDSDYAGDLDDKKSTSGYVFMIGSKAVSWSSRKQPIVTLSTTKAEFIAAASNACQGIWLSRIIAHIDVDKKKGITIFCDNTSSIKLSKNPVLHGRSKHIDVRFHFLRDLTKDGVIKLVHCSSFEQTADIMTKALSLDNFCRIRGL 1162          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 214 bits (544), Expect = 1.120e-60
Identity = 158/497 (31.79%), Postives = 233/497 (46.88%), Query Frame = 1
Query:   31 GRMRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPE---------------------IRHLCAA--------------------------CVKASV-------------------------LSDIGT-------GVQESSRGRSSNLSE------------------------------------------------YRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQFLRLRNL 1140
            GRM+ +   GTWE   L   P G     + W+FK K    G++A++KARLVAQGFSQ+   D+ +T APVA +S++R + +LAA   +E+  MDV  AYLN  +EEE+F+K PP FP   +                      + LCAA                           V  SV                         ++D+G         ++   RGR+ ++ +                                                YR   GSLMYA+  TR D++YAV  +++ M++P    +   K + RYL    +  +T+GG  N +G+EGF DAD     + R+S +GYVF ++GGA+S  S+KQ +V  SSTEAEYVA   A K  ++ R  LG I       TTL+ DN+SAI ++K +  H RTKHI +R+H IR+ +  G + + +  T+D  AD+LTK L+R +  ++R L
Sbjct:   54 GRMKKM---GTWE---LAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGL 542          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A4Z0A825_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A825_9AGAM)

HSP 1 Score: 211 bits (537), Expect = 3.390e-60
Identity = 142/379 (37.47%), Postives = 209/379 (55.15%), Query Frame = 1
Query:   58 GTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPEIRHLCA---ACVKASVLSD-------IGTGVQESSRGRSSNLSEY--------RSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQFLRLRNL 1140
            GTW+   L   P       +KW+FK K    G++ ++KARLVAQGFSQ+   DF +T APVA +S++R +  LAA  ++E+  MDV  AYLN  ++EE+++K PP FP +P   H  A     +    L D       +    Q ++    S L +Y        R   GSLMYA+  TR DIAYAV  +++ M++P R  +   KC+ RYL    +  +T+ G +   G+ G+ DAD     + R   +GYVF ++ GA+S  S+KQ +V   STEAEYVA   A K  V++R  LG +       T L  DN+SA+ ++K +  H RTKHI +R+H IR  I    + L +  T++  AD+LTK L+  +  ++R L
Sbjct:  112 GTWK---LVEKPDRVNIVGSKWVFKIKRDAAGTIIKYKARLVAQGFSQIPGVDFTDTFAPVAKLSSIRILAVLAAHFNWELHQMDVKNAYLNGDLDEEIYMKQPPGFP-APGQEHKRAYIDTILARFNLEDSKPLDTALDPSFQLTTAQSPSTLQQYEEMRNVPYREAIGSLMYAALGTRPDIAYAVTTLSQFMQNPGRMHWEGAKCVLRYLKATKEEWLTYRGDAKT-GIMGYSDADWGSS-DHRHFISGYVFLVDSGAVSWSSKKQPIVALLSTEAEYVAMTHAAKEAVWMRAFLGEMLTPFDMPTLLHCDNQSAMTLAKDNIFHSRTKHIAIRYHFIRNIIEHDEIDLVYCPTAEMAADVLTKALTCPKMEKMRGL 484          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A5E8BJR9_9ASCO (Integrase catalytic domain-containing protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BJR9_9ASCO)

HSP 1 Score: 218 bits (556), Expect = 1.410e-59
Identity = 155/460 (33.70%), Postives = 223/460 (48.48%), Query Frame = 1
Query:   37 MRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPEIRHLC---------------------AACVK------------------------ASVLSDIGT-------------------------------GVQESSRGRS-------SNLSE---------YRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQFLRLRNL 1140
            M +L  NGTWE  DL   P GRKA  +KW+FK K K DGS+ R+KARLV  GFSQVE  D+ ET APV    T+R V ++AA+  F++  MDV+ A+LN  ++E+++++ P  F +  +   +C                      A VK                        A  + D+G                                G+Q  S  ++       S+ SE         YRS+ G L+YA+   R D+A AV  + R+M+ P        K   RYL    +LG+ +  +   + L G+ DAD A+D +DRKS TGYVF L+GG I+   RKQ     SS E+EY++  +A K   ++ +LL           T+FEDN+  I +++    H RTKHI VR+H +R +IR G + L+++ T   LAD+ TK L RV+F  LR L
Sbjct:  784 MSSLKRNGTWELVDL---PPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESKVCHLKKSLYGLKQAPLCWNEKIHGALVKLGFIRNESDYGVYTKGSGSTMVIIALYMKDLGPVEQFLGMRVKQSPYHITVDVSRYIFDVLEEFGMQNCSSVKTPLPTRDLSDFSESDSATDASMYRSIIGKLIYAANCARPDLAVAVSFLCRYMQSPKSIHMEAAKHTLRYLKGTAELGLEYRAQKV-YKLVGYSDADYAQDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCKIPVPLPVTMFEDNQGCIALAQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFETLRGL 1239          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A2N9I807_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I807_FAGSY)

HSP 1 Score: 218 bits (556), Expect = 1.480e-59
Identity = 150/410 (36.59%), Postives = 221/410 (53.90%), Query Frame = 1
Query:   43 ALADNGTWESQDLGRLPAGRKATRTKWIFKRK-LKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPL-------------------SPE--IRHLCAACVKASVLSDIGTG-------------------VQESSRGRSS------------NLSE--YRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGL 1107
            +L+ N TWE   L  LP G+K    KW+FK+K    +    R KARLVA+G+SQ    D+ E  +PV   +++R+V +L A++  E+E +DV  A+L+  +EEE+F++ P  F                     SP    + L +   K   + D+G                     +++++ GR S            N+S+  Y S  G LMYA   TR D+A+AV  V+R+M +P RE ++  K IFRYL    + GI F  +   + + G+VDAD A +V+DR+STTGYVF L+GG I   S  Q +V  S+TEAEY+A  EA K  ++L+ L+  +G   +G   +  D++SAI ++K    H RTKHI VR+H IRE I  G + L+ V TS+  AD+LTK L
Sbjct:  762 SLSKNKTWE---LTELPKGKKPIGCKWVFKKKEAVSEKEGERFKARLVAKGYSQRHGIDYDEVFSPVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTENLVCRLKKSLYGLKQSPRQWYKRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGQESYGCLRKTTSGRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPL 1167          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A438H6F6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H6F6_VITVI)

HSP 1 Score: 209 bits (532), Expect = 1.840e-59
Identity = 136/369 (36.86%), Postives = 209/369 (56.64%), Query Frame = 1
Query:  103 KATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSF---------------------PLSPEI--RHLCAACVKASVLSDIGTGVQESSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQFLRLRNL 1140
            K+   KW++K KL +DG V ++KARLVA+G+ Q    D+ E  APVA + T+R V S+AA+  + I  +DV +A+L+  +EEE+++  PP +                       + EI  + +   C      S++G  + +S  G+  + + Y+ + GSLMY  T TR DI +AV+ ++R+ME+P               + V D    FG K N    E    +D A D++DRKST+G VF LN GAI+  S+KQQ+VT S+TEAE+VAA  +    ++LR LL  +    +G T ++ DN SAI +SK    H R+KHI VR+H +R+  ++G + L   ++ DQ+ADILTK L    F++LR++
Sbjct:  127 KSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFGVDYKEVFAPVAKLDTIRLVLSMAAQNSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVKQGYENQVVQSSAGVFISQNKYALEILDKFMLKDCNSIITPSEVGLKLSKSGAGKMVDSTLYKQIVGSLMYL-TSTRPDIMHAVNLISRYMENP---------------TEVSD----FGCKKNFSLFE----SDYAGDLDDRKSTSGAVFMLNYGAIAWSSKKQQIVTLSTTEAEFVAAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLSAIKLSKNLVLHGRSKHIAVRYHFLRDLCKDGVIDLVFCKSEDQIADILTKPLKPAVFMKLRSM 471          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI)

HSP 1 Score: 217 bits (552), Expect = 2.340e-59
Identity = 143/417 (34.29%), Postives = 214/417 (51.32%), Query Frame = 1
Query:   37 MRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPEI-------------------------------------------RHLCAACVKASVLSDIGTGVQESSRGRSSNLSE------------YRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQF 1122
            + +L  NGTW   DL   P GR+A   KW+FK K    G + R+KARLVA+G++Q  + D+ ET +PV    ++R++ ++AA++  EI   DV  A+L   ++EE+++ +P   P + ++                                            +L     K  +    G      SR   S  SE            +R   GSLM+A+  +R DI +AV  V+R++E+P  E +   K I RY       GI + G  N  GL  + D+D A D + R+ST+GYV  L GGA+S  S++Q++V  S+TEAEYVAA +A K  +++R LL S+G   +G   +  DN+ +I + K    H RTKHI VR+H IRE  + G + +K+V +S QLADILTK L +  F
Sbjct:  511 LASLMKNGTWCEADL---PPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETYSPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEVTIGSTEYFIGLEIKRDCIVRTIKISQRNYLLRVAEKIGLADAKGISTPAESRVYLSTTSEDNNDKRDMEKVPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGLEHWQAVKRIIRYAKETAAYGIVYDGH-NTDGLIIYSDSDYATDPDTRRSTSGYVTVLAGGAVSWMSQRQRIVALSTTEAEYVAASDATKEAIWIRRLLESVGVNKKGPIEMRLDNQGSIKLIKNPEFHKRTKHIDVRFHYIREIYKNGQIDIKYVPSSKQLADILTKALPKSTF 923          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A4C1T256_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T256_EUMVA)

HSP 1 Score: 217 bits (552), Expect = 4.060e-59
Identity = 140/378 (37.04%), Postives = 204/378 (53.97%), Query Frame = 1
Query:    1 EGEKMARGNGGRMRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPEI--RHLCAACVKASVLSDIGTGVQ--ESSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTT---LFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSR 1113
            E EK  +       +L  N TW   DL   P G+K    KW+FKRK    G + R+KARLV +G+ Q +  D+ E  APV   +++R +  +AA+ + EI  MD   A+L   V+E++++  PP+F    +I  R     C       D  T ++  ES      N+  Y+   G L+Y S  TR DI Y V+ ++R+   P  E ++  K +FRYL    D  +T+ G S G+ + G+ DAD A   EDR+S TGYVF L G AIS CS+KQ  +  SSTEAEY +   A +  ++ ++L     +    +     ++ DN+SAI I      H R+KHIGVR+H IRE I +  + +K+ ++ D  ADILTKGL R
Sbjct:  753 ESEKWKQAMKEEYESLIHNNTWSLVDL---PGGKKGIPCKWVFKRKFDHTGKITRYKARLVIKGYKQKKGIDYNEIYAPVVRYTSIRYLIDIAAKYNLEIHQMDAITAFLQGDVDEDIYMSQPPTFDREEKILTRFGMDDCKPVWTPCDPNTQLKRAESEEEILRNV-PYQEAIGCLLYLSQGTRPDITYIVNSLSRYNGQPTAEHWTTLKRVFRYLKATIDYKLTYHGNSEGN-ITGYCDADWASHSEDRRSCTGYVFILQGAAISWCSKKQLTIALSSTEAEYTSLATAVQEAIWQKQL--DEDYWPESSAVPIVVYCDNQSAIRILDSESYHQRSKHIGVRYHFIRERIADKQVLVKYQRSQDMTADILTKGLHR 1123          
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 207 bits (526), Expect = 4.710e-59
Identity = 130/362 (35.91%), Postives = 184/362 (50.83%), Query Frame = 1
Query:   37 MRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVARHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMDVDAAYLNAPVEEELFVKLPPSFPLSPEIRHLCAACVKASVLSDIGTGVQESSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFSICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*AEDVEDRKSTTGYVFKLNGGAISSCSRKQQLVTWSSTEAEYVAAGEAGKGRVYLRELLGSIGFGCRGNTTLFEDNKSAINISKGSGAHCRTKHIGVRWHGIREWIREGTLALKHVQTSDQLADILTKGLSRVQF 1122
            M +L  N TW    L   P G K    KW++K K   +G++ R+KARLV QGF Q E  D+ E  APV+  STLR+V S A  +  ++  +D+  A+LN  ++EE++                                              Y +L GSLMY S  TR DIA AV  +ARHM +P  + ++  K + RYL+  PD+GITFG  S G  L+ F DAD A D++ R+STTGY F  NGGAIS  SR Q  V  S+TEAEY+AA    K  ++LR+L   +         +  D+++A+ + K      R+KHI V  H  RE +    +  +++ T   +AD LTK +   +F
Sbjct:   77 MASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTH-------------------------------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDLH-TVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTKPVPATKF 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39707.10302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9EI16_FAGSY5.020e-6436.50Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2Z6N7S3_TRISU5.220e-6336.77Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A4Y9ZVS1_9AGAM1.120e-6031.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Z0A825_9AGAM3.390e-6037.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BJR9_9ASCO1.410e-5933.70Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9I807_FAGSY1.480e-5936.59Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438H6F6_VITVI1.840e-5936.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KHD5_LASNI2.340e-5934.29Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A4C1T256_EUMVA4.060e-5937.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6UYX8_9CHLO4.710e-5935.91Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39707contigH-paniculata_contig39707:1..1583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score128.6
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog981085.XP_010112166.1
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.DNA polymerase
EggNOG OGs37KZP@33090,3G7AS@35493,4JNSM@91835,COG0749@1,COG2801@1,KOG0017@2759,KOG0950@2759
EC2.7.7.7
COG Functional cat.A
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size1140
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39707.10302.1prot_H-paniculata_contig39707.10302.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39707 13..1163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930215.5883522-UTR-H-paniculata_contig39707:0..121622930215.5883522-UTR-H-paniculata_contig39707:0..12Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39707 1..12 +
1691481194.8677359-UTR-H-paniculata_contig39707:0..121691481194.8677359-UTR-H-paniculata_contig39707:0..12Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39707 1..12 +
1622930215.62682-UTR-H-paniculata_contig39707:1163..15831622930215.62682-UTR-H-paniculata_contig39707:1163..1583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39707 1164..1583 +
1691481194.902045-UTR-H-paniculata_contig39707:1163..15831691481194.902045-UTR-H-paniculata_contig39707:1163..1583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39707 1164..1583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930215.6010206-CDS-H-paniculata_contig39707:12..4271622930215.6010206-CDS-H-paniculata_contig39707:12..427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39707 13..427 +
1691481194.884123-CDS-H-paniculata_contig39707:12..4271691481194.884123-CDS-H-paniculata_contig39707:12..427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39707 13..427 +
1622930215.6146715-CDS-H-paniculata_contig39707:870..11631622930215.6146715-CDS-H-paniculata_contig39707:870..1163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39707 871..1163 +
1691481194.8927124-CDS-H-paniculata_contig39707:870..11631691481194.8927124-CDS-H-paniculata_contig39707:870..1163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39707 871..1163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39707.10302.1

>prot_H-paniculata_contig39707.10302.1 ID=prot_H-paniculata_contig39707.10302.1|Name=mRNA_H-paniculata_contig39707.10302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MARGNGGRMRALADNGTWESQDLGRLPAGRKATRTKWIFKRKLKEDGSVA
RHKARLVAQGFSQVESEDFLETSAPVACMSTLRSVFSLAAERHFEIEGMD
VDAAYLNAPVEEELFVKLPPSFPLSPEIRHLCAACVKASVLSDIGTGVQE
SSRGRSSNLSEYRSLAGSLMYASTRTRADIAYAVHQVARHMEDPCREDFS
ICKCIFRYLSTVPDLGITFGGKSNGHGLEGFVDAD*
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mRNA from alignment at H-paniculata_contig39707:1..1583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39707.10302.1 ID=mRNA_H-paniculata_contig39707.10302.1|Name=mRNA_H-paniculata_contig39707.10302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1583bp|location=Sequence derived from alignment at H-paniculata_contig39707:1..1583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGGGAAAAAATGGCTCGCGGCAATGGAGGAAGAATGAGGGCGTTGGC GGACAATGGAACATGGGAAAGCCAAGACCTGGGGAGGTTACCGGCAGGGC GGAAGGCGACTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGAC GGCAGCGTGGCACGCCACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACA GGTGGAGAGTGAAGATTTCCTTGAAACTAGTGCCCCCGTAGCTTGCATGT CGACGTTACGTTCTGTTTTTAGCCTGGCCGCCGAACGTCATTTCGAAATA GAAGGTATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGA GTTGTTTGTTAAGCTACCCCCGAGTTTTCCCCTTTCTCCCGAGATACGCC ATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCTTCAAGCAGAGCGGCC AAAGTTGGAATAACGCTCTCGACGATTTTCTTGTTGGGATAGGACTCGAC CGTTCCACTACCGACTCATGCTTGTACTTTTCCCGCGACGACGGGGGAGA AACAAACCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGCTGGTC GTCGTGAAAAATTAGACGAGCTCAAGCATAACATAAGTCAGCGTTTTAGA ATGAAAGACTAGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTATGACG TGACCGCCCTAATGGCACCATAACGATCTCGCAGGGTAGCTACATCTTCG AGGTACTAAAAAGATAGGGTTTTGACGAGTCTCTAGGAGTACCCACCCAT GCAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTC CGAACAGAAGTCATTTGGAGCTGTACTATCGGACATAGGCACAGGAGTAC AAGAAAGCAGCAGAGGGAGAAGTAGCAATTTATCTGAATATAGAAGCTTG GCAGGATCACTCATGTACGCCTCGACAAGAACTAGAGCTGATATAGCATA CGCGGTACACCAAGTAGCACGTCATATGGAGGATCCATGTCGAGAAGACT TCAGTATATGCAAGTGCATTTTTCGTTATCTCAGTACTGTACCTGACCTC GGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGT TGATGCCGATTAGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGAT ACGTTTTCAAGCTGAACGGTGGTGCGATAAGTTCGTGCTCTAGGAAGCAA CAGTTAGTCACGTGGTCTAGTACAGAGGCAGAGTACGTTGCTGCAGGAGA AGCGGGAAAGGGGAGGGTATATCTTAGGGAGTTACTAGGATCGATAGGTT TCGGATGCAGGGGGAACACGACATTGTTTGAGGACAATAAATCAGCTATT AATATCAGTAAGGGATCTGGCGCACACTGCAGGACAAAGCACATCGGAGT GCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAACATTGGCATTGA AACACGTGCAGACCAGCGATCAACTTGCTGACATTTTAACGAAAGGATTA AGCAGAGTACAGTTTCTGAGACTGAGAAATTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig39707:1..1583+

>mRNA_H-paniculata_contig39707.10302.1 ID=mRNA_H-paniculata_contig39707.10302.1|Name=mRNA_H-paniculata_contig39707.10302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig39707:1..1583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGCGGCAATGGAGGAAGAATGAGGGCGTTGGCGGACAATGGAAC
ATGGGAAAGCCAAGACCTGGGGAGGTTACCGGCAGGGCGGAAGGCGACTC
GTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCA
CGCCACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGAGTGA
AGATTTCCTTGAAACTAGTGCCCCCGTAGCTTGCATGTCGACGTTACGTT
CTGTTTTTAGCCTGGCCGCCGAACGTCATTTCGAAATAGAAGGTATGGAC
GTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGTTGTTTGTTAA
GCTACCCCCGAGTTTTCCCCTTTCTCCCGAGATACGCCATTTGTGCGCCG
CCTGCGTAAAAGCCTATGGCTCGCGGCAATGGAGGAAGAATGAGGGCGTT
GGCGGACAATGGAACATGGGAAAGCCAAGACCTGGGGAGGTTACCGGCAG
GGCGGAAGGCGACTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAG
GACGGCAGCGTGGCACGCCACAAAGCGCGACTGGTGGCTCAAGGTTTTTC
ACAGGTGGAGAGTGAAGATTTCCTTGAAACTAGTGCCCCCGTAGCTTGCA
TGTCGACGTTACGTTCTGTTTTTAGCCTGGCCGCCGAACGTCATTTCGAA
ATAGAAGGTATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGA
AGAGTTGTTTGTTAAGCTACCCCCGAGTTTTCCCCTTTCTCCCGAGATAC
GCCATTTGTGCGCCGCCTGCGTAAAAGCCTCTGTACTATCGGACATAGGC
ACAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTAGCAATTTATCTGAATA
TAGAAGCTTGGCAGGATCACTCATGTACGCCTCGACAAGAACTAGAGCTG
ATATAGCATACGCGGTACACCAAGTAGCACGTCATATGGAGGATCCATGT
CGAGAAGACTTCAGTATATGCAAGTGCATTTTTCGTTATCTCAGTACTGT
ACCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCGTTGATGCCGATTAGCTGTACTATCGGACATAGGCACAGGAG
TACAAGAAAGCAGCAGAGGGAGAAGTAGCAATTTATCTGAATATAGAAGC
TTGGCAGGATCACTCATGTACGCCTCGACAAGAACTAGAGCTGATATAGC
ATACGCGGTACACCAAGTAGCACGTCATATGGAGGATCCATGTCGAGAAG
ACTTCAGTATATGCAAGTGCATTTTTCGTTATCTCAGTACTGTACCTGAC
CTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATT
CGTTGATGCCGATTAG
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