mRNA_H-paniculata_contig3970.10301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3970.10301.1
Unique NamemRNA_H-paniculata_contig3970.10301.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3970.10301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3970contigH-paniculata_contig3970:8337..8906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3970.10301.1prot_H-paniculata_contig3970.10301.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3970 8498..8893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930215.4964721-UTR-H-paniculata_contig3970:8336..84971622930215.4964721-UTR-H-paniculata_contig3970:8336..8497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3970 8337..8497 +
1691481194.8331-UTR-H-paniculata_contig3970:8336..84971691481194.8331-UTR-H-paniculata_contig3970:8336..8497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3970 8337..8497 +
1622930215.5328913-UTR-H-paniculata_contig3970:8893..89061622930215.5328913-UTR-H-paniculata_contig3970:8893..8906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3970 8894..8906 +
1691481194.855463-UTR-H-paniculata_contig3970:8893..89061691481194.855463-UTR-H-paniculata_contig3970:8893..8906Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3970 8894..8906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930215.5148203-CDS-H-paniculata_contig3970:8497..88931622930215.5148203-CDS-H-paniculata_contig3970:8497..8893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3970 8498..8893 +
1691481194.8448408-CDS-H-paniculata_contig3970:8497..88931691481194.8448408-CDS-H-paniculata_contig3970:8497..8893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3970 8498..8893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3970.10301.1

>prot_H-paniculata_contig3970.10301.1 ID=prot_H-paniculata_contig3970.10301.1|Name=mRNA_H-paniculata_contig3970.10301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MVWDSSLNSESLGRSARSADGGVLTVTRGNAFVSVSSAPPVRAKRAKRAA
APSPGLLSPGGVVALAETSHEGGSSSGELRSERRREGSNRMEVKAPTPAD
PDTSSATRGVVDSNVSLASRGGSGATEGSRD*
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mRNA from alignment at H-paniculata_contig3970:8337..8906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3970.10301.1 ID=mRNA_H-paniculata_contig3970.10301.1|Name=mRNA_H-paniculata_contig3970.10301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=570bp|location=Sequence derived from alignment at H-paniculata_contig3970:8337..8906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAGTATGCGGCTGAAGAGGCTGGTCACCTTCGGTCATGACACTGGTGG
CGGGTCCAGCAGTCGGAGCCGCGCCACGGGCGGGACTGGTAGGCATCAAC
TCTCGAAAGCGGAGGAAGTGCTGACAGCACCCCTACGCAAAACGCAGTTG
AGGCGTTGCTCATGGTGTGGGATTCATCCCTCAATTCCGAAAGCCTCGGG
CGAAGTGCTCGGTCGGCAGATGGAGGCGTATTAACCGTGACTCGCGGGAA
TGCTTTTGTCTCAGTCTCATCTGCCCCGCCTGTACGAGCGAAGAGGGCTA
AGAGGGCCGCTGCACCAAGCCCTGGCCTTTTATCGCCGGGCGGTGTAGTT
GCACTCGCGGAGACGAGTCATGAAGGTGGATCTAGTTCAGGCGAACTAAG
GTCGGAGCGCCGCCGCGAGGGTAGCAACCGGATGGAGGTTAAAGCTCCTA
CCCCCGCCGATCCGGATACCAGCTCTGCCACTCGCGGCGTTGTCGACAGC
AACGTTTCCTTGGCAAGCCGCGGTGGGTCAGGGGCAACAGAGGGCTCAAG
GGATTGATCCCAGTCACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3970:8337..8906+

>mRNA_H-paniculata_contig3970.10301.1 ID=mRNA_H-paniculata_contig3970.10301.1|Name=mRNA_H-paniculata_contig3970.10301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig3970:8337..8906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGGGATTCATCCCTCAATTCCGAAAGCCTCGGGCGAAGTGCTCG
GTCGGCAGATGGAGGCGTATTAACCGTGACTCGCGGGAATGCTTTTGTCT
CAGTCTCATCTGCCCCGCCTGTACGAGCGAAGAGGGCTAAGAGGGCCGCT
GCACCAAGCCCTGGCCTTTTATCGCCGGGCGGTGTAGTTGCACTCGCGGA
GACGAGTCATGAAGGTGGATCTAGTTCAGGCGAACTAAGGTCGGAGCGCC
GCCGCGAGGGTAGCAACCGGATGGAGGTTAAAGCTCCTACCCCCGCCGAT
CCGGATACCAGCTCTGCCACTCGCGGCGTTGTCGACAGCAACGTTTCCTT
GGCAAGCCGCGGTGGGTCAGGGGCAACAGAGGGCTCAAGGGATTGAATGG
TGTGGGATTCATCCCTCAATTCCGAAAGCCTCGGGCGAAGTGCTCGGTCG
GCAGATGGAGGCGTATTAACCGTGACTCGCGGGAATGCTTTTGTCTCAGT
CTCATCTGCCCCGCCTGTACGAGCGAAGAGGGCTAAGAGGGCCGCTGCAC
CAAGCCCTGGCCTTTTATCGCCGGGCGGTGTAGTTGCACTCGCGGAGACG
AGTCATGAAGGTGGATCTAGTTCAGGCGAACTAAGGTCGGAGCGCCGCCG
CGAGGGTAGCAACCGGATGGAGGTTAAAGCTCCTACCCCCGCCGATCCGG
ATACCAGCTCTGCCACTCGCGGCGTTGTCGACAGCAACGTTTCCTTGGCA
AGCCGCGGTGGGTCAGGGGCAACAGAGGGCTCAAGGGATTGA
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