mRNA_H-paniculata_contig39699.10296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39699.10296.1
Unique NamemRNA_H-paniculata_contig39699.10296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39699.10296.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.020e-6
Identity = 30/89 (33.71%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  166 RQTRLFGERLCQRSATDWAAEQQKDPLASTVIKYVLSEQSLPVPNFVTTAATAGHFKVEEVCRLARQGTLVTLDDNRHLLVKRSMVKPA 432
            ++ + FGERLC+++A+DW   Q KD  A   ++ +  E  + V          G   +++V RL  QGT++ L D+R LLV+R+  +P+
Sbjct:  586 KEAKEFGERLCEKTASDWVEAQYKDLTAKAALQLITDE--VEVHKIGENDIPEG-VDIDDVKRLVAQGTIMVLADSRKLLVRRATREPS 671
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BLAST of mRNA_H-paniculata_contig39699.10296.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.350e-5
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  106 PVAPYGLSEDPAPVFSEAQERQTRLFGERLCQRSATDWAAEQQKDPLASTVIKYV--------LSEQSLPVPNFVTTAATAGHFKVEEVCRLARQGTLVTLDDNRHLLVKRSMVKPA 432
            P AP  L + P   + E Q +    FGE+LC ++A+DWA  Q++D  A   I  +        + E  +P    V          ++E+ RL  QGTL+ L +++HLLV++ +  PA
Sbjct:  356 PAAP-PLPQIPLQEYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDTARLAITAIEGHADPKRMKEGDIPEGVDVD---------LDELKRLVSQGTLLVLPNSKHLLVRKELKAPA 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39699.10296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRW3_9PHAE7.020e-633.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWR4_9PHAE1.350e-531.62Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39699contigH-paniculata_contig39699:546..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005210.1
Exons1
Model size436
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.5863347-CDS-H-paniculata_contig39699:545..9771622930214.5863347-CDS-H-paniculata_contig39699:545..977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39699 546..977 +
1691481194.2967231-CDS-H-paniculata_contig39699:545..9771691481194.2967231-CDS-H-paniculata_contig39699:545..977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39699 546..977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39699.10296.1prot_H-paniculata_contig39699.10296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39699 546..977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39699.10296.1

>prot_H-paniculata_contig39699.10296.1 ID=prot_H-paniculata_contig39699.10296.1|Name=mRNA_H-paniculata_contig39699.10296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
HPVENIRVPPSNVIVPPSVPPCQGQLNTGIMLHAFPVAPYGLSEDPAPVF
SEAQERQTRLFGERLCQRSATDWAAEQQKDPLASTVIKYVLSEQSLPVPN
FVTTAATAGHFKVEEVCRLARQGTLVTLDDNRHLLVKRSMVKPA
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mRNA from alignment at H-paniculata_contig39699:546..979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39699.10296.1 ID=mRNA_H-paniculata_contig39699.10296.1|Name=mRNA_H-paniculata_contig39699.10296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=434bp|location=Sequence derived from alignment at H-paniculata_contig39699:546..979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCCGTTGAGAATATTCGAGTACCGCCTTCGAATGTTATTGTGCCCCC
CTCTGTCCCTCCGTGTCAAGGACAGCTGAATACCGGTATAATGCTCCACG
CTTTTCCGGTTGCACCGTACGGTCTTTCTGAGGATCCCGCCCCAGTATTT
TCGGAAGCACAAGAGCGACAGACACGCCTCTTTGGGGAGCGACTGTGTCA
GCGGAGCGCGACCGACTGGGCAGCTGAGCAACAGAAAGATCCCTTGGCTA
GCACCGTCATAAAGTATGTATTATCCGAGCAATCGCTTCCAGTTCCGAAT
TTTGTGACGACAGCGGCCACAGCAGGGCACTTCAAGGTGGAGGAGGTTTG
CCGTTTAGCTCGGCAGGGTACTCTGGTAACATTAGACGACAATCGACACC
TTTTAGTGAAACGTTCCATGGTCAAGCCCGCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig39699:546..979+

>mRNA_H-paniculata_contig39699.10296.1 ID=mRNA_H-paniculata_contig39699.10296.1|Name=mRNA_H-paniculata_contig39699.10296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig39699:546..979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCCGTTGAGAATATTCGAGTACCGCCTTCGAATGTTATTGTGCCCCC
CTCTGTCCCTCCGTGTCAAGGACAGCTGAATACCGGTATAATGCTCCACG
CTTTTCCGGTTGCACCGTACGGTCTTTCTGAGGATCCCGCCCCAGTATTT
TCGGAAGCACAAGAGCGACAGACACGCCTCTTTGGGGAGCGACTGTGTCA
GCGGAGCGCGACCGACTGGGCAGCTGAGCAACAGAAAGATCCCTTGGCTA
GCACCGTCATAAAGTATGTATTATCCGAGCAATCGCTTCCAGTTCCGAAT
TTTGTGACGACAGCGGCCACAGCAGGGCACTTCAAGGTGGAGGAGGTTTG
CCGTTTAGCTCGGCAGGGTACTCTGGTAACATTAGACGACAATCGACACC
TTTTAGTGAAACGTTCCATGGTCAAGCCCGCGCACCCCGTTGAGAATATT
CGAGTACCGCCTTCGAATGTTATTGTGCCCCCCTCTGTCCCTCCGTGTCA
AGGACAGCTGAATACCGGTATAATGCTCCACGCTTTTCCGGTTGCACCGT
ACGGTCTTTCTGAGGATCCCGCCCCAGTATTTTCGGAAGCACAAGAGCGA
CAGACACGCCTCTTTGGGGAGCGACTGTGTCAGCGGAGCGCGACCGACTG
GGCAGCTGAGCAACAGAAAGATCCCTTGGCTAGCACCGTCATAAAGTATG
TATTATCCGAGCAATCGCTTCCAGTTCCGAATTTTGTGACGACAGCGGCC
ACAGCAGGGCACTTCAAGGTGGAGGAGGTTTGCCGTTTAGCTCGGCAGGG
TACTCTGGTAACATTAGACGACAATCGACACCTTTTAGTGAAACGTTCCA
TGGTCAAGCCCGCG
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