mRNA_H-paniculata_contig3969.10293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3969.10293.1
Unique NamemRNA_H-paniculata_contig3969.10293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3969.10293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3969contigH-paniculata_contig3969:5189..6742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size440
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3969.10293.1prot_H-paniculata_contig3969.10293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3969 5269..6742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.2388096-UTR-H-paniculata_contig3969:5188..52681622930214.2388096-UTR-H-paniculata_contig3969:5188..5268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3969 5189..5268 +
1691481194.1534595-UTR-H-paniculata_contig3969:5188..52681691481194.1534595-UTR-H-paniculata_contig3969:5188..5268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3969 5189..5268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.255084-CDS-H-paniculata_contig3969:5268..53201622930214.255084-CDS-H-paniculata_contig3969:5268..5320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 5269..5320 +
1691481194.1651142-CDS-H-paniculata_contig3969:5268..53201691481194.1651142-CDS-H-paniculata_contig3969:5268..5320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 5269..5320 +
1622930214.2659428-CDS-H-paniculata_contig3969:5630..57151622930214.2659428-CDS-H-paniculata_contig3969:5630..5715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 5631..5715 +
1691481194.1834176-CDS-H-paniculata_contig3969:5630..57151691481194.1834176-CDS-H-paniculata_contig3969:5630..5715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 5631..5715 +
1622930214.28343-CDS-H-paniculata_contig3969:6519..67421622930214.28343-CDS-H-paniculata_contig3969:6519..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 6520..6742 +
1691481194.1954262-CDS-H-paniculata_contig3969:6519..67421691481194.1954262-CDS-H-paniculata_contig3969:6519..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3969 6520..6742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3969.10293.1

>prot_H-paniculata_contig3969.10293.1 ID=prot_H-paniculata_contig3969.10293.1|Name=mRNA_H-paniculata_contig3969.10293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MSASGTVDDRTEELEDEGGSLDYRALIEEQKRELEQLKRATAHEFRGDHL
LLGGGEATFCSPLSSPRTTGQGRRYPPPQRQDNNAVDNAASLSFHNKSHN
DDDNNYSLASEYGRGEDTTS
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mRNA from alignment at H-paniculata_contig3969:5189..6742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3969.10293.1 ID=mRNA_H-paniculata_contig3969.10293.1|Name=mRNA_H-paniculata_contig3969.10293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig3969:5189..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCCGTAACCGTGGTGTGAGGGCTAGGTACACGCAGTAGGTTGGTGGT
CACGAAGAACTGAAACAAACAAAGGCGACGATGTCGGCGTCTGGAACAGT
GGATGATAGAACTGAAGAGCTGGAAGACGAAGGTACGGTTGCAGAATTTG
ACTCCATTGTTCGGGGAAATCCAAGTGCAAATTTGAAATGGATAACAAAT
GCGCTCCCACAGAGAGCATGCCCGTTAGCGTACGCTGTTACTGTCTGTGA
CCCCGATAGGTAGTGTTTACTCATGTGAAAAGATACGGTAACATAGCTCC
TGCTGCATGTGAAGCTAGCAACCCGTGAAAATATCTGCTGAGCTGCTCTC
TCTGACTTCTCTCTTCGAAATATCGACTGCGCAGCTGCTCATCTTGCAGT
ACTGACAACACCAGCTGTTTGGGTGAATTTTGAAAACGGCAGGTGGTTCG
TTGGACTACCGGGCTCTTATAGAAGAGCAAAAGCGAGAACTGGAGCAGTT
GAAGAGGGCTACGGCCCACGAATTCCGGTACGTCCATCCTACGTGTATGT
ATGAATGTGTATCGGGTACTTTAACTTCTTTCTGAAAGACAAGATCTGTC
AAATATGACCCACTATGGAGAACATCAATTGTGCATGTAGACGGGTACCA
CTGACTCGGTATCAACTGACTACCGTTATTGCTGTTAATTTACCTACATC
GACAAGGTGAATTTAACAAGCAATAGCTGATTTGGCCACCATTAAGGCCT
GAGATAAGCTCAAGAGCTTATCTGTAGGCAGTACAGTGTTTCTATAGACG
ACTGAGAGCGCTGTCGCCTTGAGTCCGCGTGCGCAGCAACATTACCGTTG
GGTGAAGCGCAACGACTCACTTTTTGCACCGTGTACCAAGCGTGTCTGCC
TGTTGGTGATTTACACACAGGGTAGCGACTGTGTCTGCGTCGTGTGCATT
GAAGTACTGTCCCCTATCCCCTGTCGTCTGTTCAGTAATGACACTTCTGT
ATTAACAGTCAGATCATTTCTCCCCCACCCAATACGACGTCATGTACCGC
AATAGTTTTCATCACACCAAAATTTTTCTCGTCGCTCGCATGTCACAACT
TTGTAGTTCTTGGAATTTAACCCGCTAGGTAGCTCCAGTTACTCGACCCC
TCGGCACTGTCCTCGACTTTGGCATACCTTCTGTCCGCCGCATACCCCAA
ACACCCTTAAATTCAGTGCTGAGATATTCCGAACCACACAGGTATGCTCT
ACTAACCTCCAATGCACCACACACGCTATCCTATTTAATCTGCTACCTTT
CCCCGGCGATGTCACCCTGGTTAATCCATAGAGGCGACCATTTGCTCCTG
GGCGGGGGCGAGGCTACATTTTGCTCGCCGCTATCGTCTCCTCGGACGAC
TGGGCAAGGGCGCCGATACCCACCGCCCCAGCGCCAGGATAACAACGCTG
TCGACAATGCCGCGTCCCTCTCCTTCCACAACAAGAGCCACAACGACGAC
GACAACAATTACAGCCTGGCATCGGAATATGGACGGGGAGAAGACACTAC
GTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3969:5189..6742+

>mRNA_H-paniculata_contig3969.10293.1 ID=mRNA_H-paniculata_contig3969.10293.1|Name=mRNA_H-paniculata_contig3969.10293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig3969:5189..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCGTCTGGAACAGTGGATGATAGAACTGAAGAGCTGGAAGACGA
AGATGTCGGCGTCTGGAACAGTGGATGATAGAACTGAAGAGCTGGAAGAC
GAAGGTGGTTCGTTGGACTACCGGGCTCTTATAGAAGAGCAAAAGCGAGA
ACTGGAGCAGTTGAAGAGGGCTACGGCCCACGAATTCCGGTGGTTCGTTG
GACTACCGGGCTCTTATAGAAGAGCAAAAGCGAGAACTGGAGCAGTTGAA
GAGGGCTACGGCCCACGAATTCCGAGGCGACCATTTGCTCCTGGGCGGGG
GCGAGGCTACATTTTGCTCGCCGCTATCGTCTCCTCGGACGACTGGGCAA
GGGCGCCGATACCCACCGCCCCAGCGCCAGGATAACAACGCTGTCGACAA
TGCCGCGTCCCTCTCCTTCCACAACAAGAGCCACAACGACGACGACAACA
ATTACAGCCTGGCATCGGAATATGGACGGGGAGAAGACACTACGTCGAGG
CGACCATTTGCTCCTGGGCGGGGGCGAGGCTACATTTTGCTCGCCGCTAT
CGTCTCCTCGGACGACTGGGCAAGGGCGCCGATACCCACCGCCCCAGCGC
CAGGATAACAACGCTGTCGACAATGCCGCGTCCCTCTCCTTCCACAACAA
GAGCCACAACGACGACGACAACAATTACAGCCTGGCATCGGAATATGGAC
GGGGAGAAGACACTACGTCG
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